More than 300 homologs were found in PanDaTox collection
for query gene Tfu_0935 on replicon NC_007333
Organism: Thermobifida fusca YX



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007333  Tfu_0935  multiple sugar transport system permease protein  100 
 
 
328 aa  659    Thermobifida fusca YX  Bacteria  normal  0.36894  n/a   
 
 
-
 
NC_013595  Sros_3307  sugar transport system (permease)  57.68 
 
 
325 aa  350  2e-95  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.175437 
 
 
-
 
NC_013510  Tcur_1735  binding-protein-dependent transport systems inner membrane component  54.23 
 
 
328 aa  332  5e-90  Thermomonospora curvata DSM 43183  Bacteria  normal  0.152171  n/a   
 
 
-
 
NC_009953  Sare_0392  binding-protein-dependent transport systems inner membrane component  55.71 
 
 
328 aa  317  2e-85  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00382252 
 
 
-
 
NC_013093  Amir_1786  binding-protein-dependent transport systems inner membrane component  49.39 
 
 
335 aa  316  3e-85  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0186858  n/a   
 
 
-
 
NC_014165  Tbis_0841  binding-protein-dependent transporter inner membrane component  52.28 
 
 
337 aa  310  2.9999999999999997e-83  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.203798 
 
 
-
 
NC_009921  Franean1_5460  binding-protein-dependent transport systems inner membrane component  53.97 
 
 
334 aa  306  3e-82  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_009380  Strop_1558  binding-protein-dependent transport systems inner membrane component  55.56 
 
 
322 aa  302  4.0000000000000003e-81  Salinispora tropica CNB-440  Bacteria  normal  0.946878  normal  0.637369 
 
 
-
 
NC_013595  Sros_7172  sugar transport system (permease)  53.08 
 
 
323 aa  301  9e-81  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.0377247 
 
 
-
 
NC_013947  Snas_6281  binding-protein-dependent transport systems inner membrane component  52.22 
 
 
309 aa  298  9e-80  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_1507  binding-protein-dependent transport systems inner membrane component  54.18 
 
 
323 aa  296  2e-79  Salinispora arenicola CNS-205  Bacteria  normal  decreased coverage  0.0000203032 
 
 
-
 
NC_008578  Acel_0131  binding-protein-dependent transport systems inner membrane component  53.38 
 
 
320 aa  296  5e-79  Acidothermus cellulolyticus 11B  Bacteria  normal  0.495335  normal 
 
 
-
 
NC_014151  Cfla_2400  binding-protein-dependent transport systems inner membrane component  49.31 
 
 
338 aa  290  2e-77  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.00254991 
 
 
-
 
NC_014165  Tbis_1892  binding-protein-dependent transporter inner membrane component  56.21 
 
 
323 aa  289  4e-77  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.254377 
 
 
-
 
NC_011886  Achl_0400  binding-protein-dependent transport systems inner membrane component  48.25 
 
 
331 aa  289  5.0000000000000004e-77  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_013521  Sked_08410  carbohydrate ABC transporter membrane protein  48.9 
 
 
379 aa  288  1e-76  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.166742 
 
 
-
 
NC_009664  Krad_3565  binding-protein-dependent transport systems inner membrane component  49.65 
 
 
316 aa  283  3.0000000000000004e-75  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.702273  normal  0.0136241 
 
 
-
 
NC_013131  Caci_5331  binding-protein-dependent transport systems inner membrane component  47.8 
 
 
324 aa  280  2e-74  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.455385  normal  0.753701 
 
 
-
 
NC_012669  Bcav_2838  binding-protein-dependent transport systems inner membrane component  47.44 
 
 
346 aa  274  2.0000000000000002e-72  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.073402  normal 
 
 
-
 
NC_013174  Jden_1881  binding-protein-dependent transport systems inner membrane component  46.89 
 
 
334 aa  269  5.9999999999999995e-71  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.804974 
 
 
-
 
NC_013530  Xcel_2612  binding-protein-dependent transport systems inner membrane component  39.25 
 
 
365 aa  253  3e-66  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_3963  binding-protein-dependent transport systems inner membrane component  46.01 
 
 
326 aa  243  3.9999999999999997e-63  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.0380307  normal  0.973635 
 
 
-
 
NC_013172  Bfae_19290  carbohydrate ABC transporter membrane protein  41.64 
 
 
328 aa  238  1e-61  Brachybacterium faecium DSM 4810  Bacteria  normal  0.0926617  n/a   
 
 
-
 
NC_013526  Tter_2645  binding-protein-dependent transport systems inner membrane component  44.71 
 
 
311 aa  232  6e-60  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_0555  binding-protein-dependent transport systems inner membrane component  43.17 
 
 
328 aa  229  4e-59  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.913769 
 
 
-
 
NC_009523  RoseRS_2895  binding-protein-dependent transport systems inner membrane component  40.07 
 
 
316 aa  216  5.9999999999999996e-55  Roseiflexus sp. RS-1  Bacteria  normal  0.0497455  normal 
 
 
-
 
NC_009767  Rcas_1880  binding-protein-dependent transport systems inner membrane component  39.66 
 
 
316 aa  204  1e-51  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.2607 
 
 
-
 
NC_008010  Dgeo_2860  binding-protein-dependent transport systems inner membrane component  37.86 
 
 
322 aa  199  5e-50  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.396467  n/a   
 
 
-
 
NC_009972  Haur_3640  binding-protein-dependent transport systems inner membrane component  39.39 
 
 
298 aa  198  9e-50  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_1100  binding-protein-dependent transport systems inner membrane component  37.88 
 
 
311 aa  195  9e-49  Rhodoferax ferrireducens T118  Bacteria  hitchhiker  0.0016702  n/a   
 
 
-
 
NC_011899  Hore_04280  binding-protein-dependent transport systems inner membrane component  37.29 
 
 
302 aa  194  1e-48  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_0285  binding-protein-dependent transport systems inner membrane component  36.53 
 
 
327 aa  195  1e-48  Meiothermus ruber DSM 1279  Bacteria  normal  0.0175684  normal  0.996665 
 
 
-
 
NC_013205  Aaci_1216  binding-protein-dependent transport systems inner membrane component  37.54 
 
 
315 aa  194  2e-48  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  decreased coverage  0.00000228392  n/a   
 
 
-
 
NC_013595  Sros_6585  lactose transport system (permease)  37.89 
 
 
306 aa  192  7e-48  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_011371  Rleg2_6525  binding-protein-dependent transport systems inner membrane component  37.09 
 
 
286 aa  182  7e-45  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.728774  normal  0.302995 
 
 
-
 
NC_012852  Rleg_6113  binding-protein-dependent transport systems inner membrane component  36.73 
 
 
286 aa  181  2e-44  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.453278  normal 
 
 
-
 
NC_011898  Ccel_2111  binding-protein-dependent transport systems inner membrane component  35.27 
 
 
306 aa  176  5e-43  Clostridium cellulolyticum H10  Bacteria  normal  0.157384  n/a   
 
 
-
 
NC_010003  Pmob_0827  binding-protein-dependent transport systems inner membrane component  40.36 
 
 
299 aa  175  9.999999999999999e-43  Petrotoga mobilis SJ95  Bacteria  normal  0.175132  n/a   
 
 
-
 
NC_011661  Dtur_0507  binding-protein-dependent transport systems inner membrane component  40.84 
 
 
299 aa  174  2.9999999999999996e-42  Dictyoglomus turgidum DSM 6724  Bacteria  hitchhiker  0.00000030377  n/a   
 
 
-
 
NC_013947  Snas_2734  binding-protein-dependent transport systems inner membrane component  35.91 
 
 
308 aa  173  3.9999999999999995e-42  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.172129  normal  0.124427 
 
 
-
 
NC_013131  Caci_2030  binding-protein-dependent transport systems inner membrane component  40.83 
 
 
297 aa  170  4e-41  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.185813 
 
 
-
 
NC_013526  Tter_2523  binding-protein-dependent transport systems inner membrane component  37.28 
 
 
309 aa  168  9e-41  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.00000000325465  n/a   
 
 
-
 
NC_009784  VIBHAR_06940  hypothetical protein  32.48 
 
 
329 aa  167  2e-40  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013131  Caci_4319  binding-protein-dependent transport systems inner membrane component  34.93 
 
 
312 aa  166  5.9999999999999996e-40  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.778687  hitchhiker  0.00185272 
 
 
-
 
NC_013501  Rmar_0359  binding-protein-dependent transport systems inner membrane component  33.7 
 
 
300 aa  166  5.9999999999999996e-40  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_012028  Hlac_2863  binding-protein-dependent transport systems inner membrane component  34.59 
 
 
356 aa  165  1.0000000000000001e-39  Halorubrum lacusprofundi ATCC 49239  Archaea  n/a    n/a   
 
 
-
 
NC_009616  Tmel_0691  binding-protein-dependent transport systems inner membrane component  34.14 
 
 
295 aa  165  1.0000000000000001e-39  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_0532  binding-protein-dependent transport systems inner membrane component  34.24 
 
 
311 aa  164  2.0000000000000002e-39  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013946  Mrub_2809  binding-protein-dependent transport systems inner membrane component  38.57 
 
 
279 aa  162  5.0000000000000005e-39  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.232459 
 
 
-
 
NC_013526  Tter_2024  binding-protein-dependent transport systems inner membrane component  33.21 
 
 
303 aa  162  9e-39  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.000000249122  n/a   
 
 
-
 
NC_013521  Sked_27700  permease component of ABC-type sugar transporter  38.21 
 
 
321 aa  161  1e-38  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.479477 
 
 
-
 
NC_010003  Pmob_0955  binding-protein-dependent transport systems inner membrane component  35.51 
 
 
291 aa  161  1e-38  Petrotoga mobilis SJ95  Bacteria  normal  0.0196347  n/a   
 
 
-
 
NC_013526  Tter_2316  binding-protein-dependent transport systems inner membrane component  33.44 
 
 
313 aa  161  1e-38  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_0830  binding-protein-dependent transport systems inner membrane component  33.67 
 
 
309 aa  161  1e-38  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_014210  Ndas_0559  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
305 aa  159  5e-38  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2302  binding-protein-dependent transport systems inner membrane component  31.8 
 
 
320 aa  159  8e-38  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.253823  n/a   
 
 
-
 
NC_012669  Bcav_2875  binding-protein-dependent transport systems inner membrane component  33.45 
 
 
318 aa  158  1e-37  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.847542  normal  0.0272583 
 
 
-
 
NC_012917  PC1_0737  binding-protein-dependent transport systems inner membrane component  36.07 
 
 
293 aa  157  2e-37  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_0461  binding-protein dependent transport system inner membrane protein  36.3 
 
 
301 aa  157  3e-37  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0667876 
 
 
-
 
NC_012669  Bcav_0647  binding-protein-dependent transport systems inner membrane component  33.22 
 
 
325 aa  157  3e-37  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013174  Jden_0512  binding-protein-dependent transport systems inner membrane component  34.2 
 
 
318 aa  157  3e-37  Jonesia denitrificans DSM 20603  Bacteria  hitchhiker  0.000000473727  hitchhiker  0.00124128 
 
 
-
 
NC_013421  Pecwa_0973  binding-protein-dependent transport systems inner membrane component  35.94 
 
 
293 aa  156  4e-37  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_013745  Htur_4489  binding-protein-dependent transport systems inner membrane component  31.51 
 
 
308 aa  155  6e-37  Haloterrigena turkmenica DSM 5511  Archaea  normal  0.283214  n/a   
 
 
-
 
NC_013172  Bfae_29330  permease component of ABC-type sugar transporter  33.23 
 
 
321 aa  155  8e-37  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_0574  binding-protein-dependent transport systems inner membrane component  31.82 
 
 
296 aa  154  1e-36  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_0477  ABC tranporter, permease protein  31.91 
 
 
315 aa  154  2e-36  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_009565  TBFG_12077  sugar ABC transporter membrane protein  32.73 
 
 
300 aa  154  2e-36  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_06580  carbohydrate ABC transporter membrane protein  33.44 
 
 
318 aa  154  2e-36  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_011368  Rleg2_5469  binding-protein-dependent transport systems inner membrane component  33.45 
 
 
313 aa  154  2e-36  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.394829 
 
 
-
 
NC_012669  Bcav_0016  binding-protein-dependent transport systems inner membrane component  30.94 
 
 
311 aa  153  2.9999999999999998e-36  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.17058  normal 
 
 
-
 
NC_013526  Tter_2208  binding-protein-dependent transport systems inner membrane component  33.93 
 
 
306 aa  153  2.9999999999999998e-36  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.739705  n/a   
 
 
-
 
NC_009667  Oant_0362  binding-protein-dependent transport systems inner membrane component  29.06 
 
 
312 aa  153  4e-36  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.541424  n/a   
 
 
-
 
NC_013530  Xcel_0409  binding-protein-dependent transport systems inner membrane component  33.84 
 
 
300 aa  153  4e-36  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_0204  binding-protein-dependent transport systems inner membrane component  35.23 
 
 
299 aa  153  4e-36  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.497209  normal  0.169553 
 
 
-
 
NC_011886  Achl_3130  binding-protein-dependent transport systems inner membrane component  34.08 
 
 
314 aa  152  5.9999999999999996e-36  Arthrobacter chlorophenolicus A6  Bacteria  n/a    decreased coverage  0.00699527 
 
 
-
 
NC_002977  MCA1942  sugar ABC transporter, permease protein  34.95 
 
 
287 aa  152  7e-36  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2573  binding-protein-dependent transport systems inner membrane component  34.55 
 
 
309 aa  152  7e-36  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_2200  binding-protein-dependent transport systems inner membrane component  36.03 
 
 
299 aa  152  7e-36  Thermoanaerobacter sp. X514  Bacteria  normal  0.426381  n/a   
 
 
-
 
NC_012034  Athe_0400  binding-protein-dependent transport systems inner membrane component  32.62 
 
 
295 aa  152  7e-36  Anaerocellum thermophilum DSM 6725  Bacteria  unclonable  0.000000000506379  n/a   
 
 
-
 
NC_013411  GYMC61_1728  binding-protein-dependent transport systems inner membrane component  36.29 
 
 
299 aa  152  1e-35  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011831  Cagg_0728  binding-protein-dependent transport systems inner membrane component  33.58 
 
 
313 aa  151  1e-35  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.000239391  normal 
 
 
-
 
NC_012848  Rleg_5199  binding-protein-dependent transport systems inner membrane component  32.58 
 
 
312 aa  151  1e-35  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.0867066 
 
 
-
 
NC_013521  Sked_11610  permease component of ABC-type sugar transporter  31.85 
 
 
311 aa  150  2e-35  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.117578  normal  0.102082 
 
 
-
 
NC_012669  Bcav_2264  binding-protein-dependent transport systems inner membrane component  33.45 
 
 
307 aa  150  3e-35  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.277747  normal 
 
 
-
 
NC_013521  Sked_07100  carbohydrate ABC transporter membrane protein  31.91 
 
 
318 aa  150  3e-35  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.790586  normal 
 
 
-
 
NC_008048  Sala_1022  binding-protein-dependent transport systems inner membrane component  33.45 
 
 
294 aa  150  4e-35  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_013411  GYMC61_2730  binding-protein-dependent transport systems inner membrane component  32.66 
 
 
300 aa  150  4e-35  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008541  Arth_3328  binding-protein-dependent transport systems inner membrane component  34.08 
 
 
314 aa  150  4e-35  Arthrobacter sp. FB24  Bacteria  normal  0.0166533  n/a   
 
 
-
 
NC_009523  RoseRS_1357  binding-protein-dependent transport systems inner membrane component  33.12 
 
 
316 aa  150  4e-35  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_2143  binding-protein-dependent transport systems inner membrane component  33.86 
 
 
318 aa  149  4e-35  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2292  binding-protein-dependent transport systems inner membrane component  34.46 
 
 
306 aa  149  5e-35  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_20620  binding-protein-dependent transport systems inner membrane component  33.46 
 
 
299 aa  149  5e-35  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_009620  Smed_4135  binding-protein-dependent transport systems inner membrane component  36.75 
 
 
299 aa  149  6e-35  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2217  binding-protein-dependent transport systems inner membrane component  32.31 
 
 
305 aa  149  8e-35  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_3567  binding-protein-dependent transport systems inner membrane component  35.14 
 
 
309 aa  149  8e-35  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_008686  Pden_1048  binding-protein-dependent transport systems inner membrane component  32.57 
 
 
308 aa  148  1.0000000000000001e-34  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_0590  binding-protein-dependent transport systems inner membrane component  33.9 
 
 
322 aa  148  1.0000000000000001e-34  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.0414899  normal  0.0385996 
 
 
-
 
NC_013172  Bfae_05100  permease component of ABC-type sugar transporter  31.49 
 
 
316 aa  148  1.0000000000000001e-34  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_1656  binding-protein-dependent transport systems inner membrane component  33.44 
 
 
318 aa  147  3e-34  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.152531  normal  0.26367 
 
 
-
 
NC_011881  Achl_4622  binding-protein-dependent transport systems inner membrane component  32.04 
 
 
317 aa  146  4.0000000000000006e-34  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
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