More than 300 homologs were found in PanDaTox collection
for query gene PC1_0182 on replicon NC_012917
Organism: Pectobacterium carotovorum subsp. carotovorum PC1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012917  PC1_0182  binding-protein-dependent transport systems inner membrane component  100 
 
 
268 aa  523  1e-147  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_009668  Oant_3705  binding-protein-dependent transport systems inner membrane component  69.63 
 
 
270 aa  380  1e-105  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.124345  n/a   
 
 
-
 
NC_009654  Mmwyl1_0180  binding-protein-dependent transport systems inner membrane component  58.87 
 
 
283 aa  320  9.999999999999999e-87  Marinomonas sp. MWYL1  Bacteria  normal  0.93964  normal 
 
 
-
 
NC_011981  Avi_7452  ABC transporter membrane spanning protein  36.72 
 
 
271 aa  171  1e-41  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011988  Avi_5611  ABC transporter membrane spanning protein (sugar)  35.32 
 
 
269 aa  142  7e-33  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011371  Rleg2_6578  binding-protein-dependent transport systems inner membrane component  35.39 
 
 
275 aa  139  3.9999999999999997e-32  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.415654 
 
 
-
 
NC_011989  Avi_2178  ABC transporter membrane spanning protein  33.89 
 
 
288 aa  137  2e-31  Agrobacterium vitis S4  Bacteria  normal  0.178146  n/a   
 
 
-
 
NC_012912  Dd1591_2093  binding-protein-dependent transport systems inner membrane component  37.34 
 
 
277 aa  135  9.999999999999999e-31  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A2450  putative spermidine/putrescine ABC transporter permease  30.89 
 
 
278 aa  132  5e-30  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_010465  YPK_2170  binding-protein-dependent transport systems inner membrane component  31.3 
 
 
278 aa  132  6.999999999999999e-30  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.260813  n/a   
 
 
-
 
NC_009708  YpsIP31758_2058  putative spermidine/putrescine ABC transporter, permease protein  31.3 
 
 
278 aa  132  6.999999999999999e-30  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.650732  n/a   
 
 
-
 
NC_012880  Dd703_1873  binding-protein-dependent transport systems inner membrane component  36.1 
 
 
278 aa  109  5e-23  Dickeya dadantii Ech703  Bacteria  normal  0.617098  n/a   
 
 
-
 
NC_009380  Strop_4233  binding-protein-dependent transport systems inner membrane component  33.46 
 
 
289 aa  108  1e-22  Salinispora tropica CNB-440  Bacteria  normal  normal  0.521193 
 
 
-
 
NC_009668  Oant_4437  binding-protein-dependent transport systems inner membrane component  30.84 
 
 
264 aa  105  7e-22  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_0171  binding-protein-dependent transport systems inner membrane component  34.67 
 
 
287 aa  104  2e-21  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_4467  binding-protein dependent transport system inner membrane protein  29.63 
 
 
282 aa  103  3e-21  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.380773  normal  0.874975 
 
 
-
 
NC_010483  TRQ2_1585  binding-protein-dependent transport systems inner membrane component  36.13 
 
 
265 aa  103  4e-21  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_009486  Tpet_1536  binding-protein-dependent transport systems inner membrane component  36.13 
 
 
265 aa  103  4e-21  Thermotoga petrophila RKU-1  Bacteria  hitchhiker  0.00509999  n/a   
 
 
-
 
NC_008688  Pden_4602  binding-protein-dependent transport systems inner membrane component  32.06 
 
 
591 aa  101  1e-20  Paracoccus denitrificans PD1222  Bacteria  normal  0.621124  normal 
 
 
-
 
NC_008699  Noca_2070  binding-protein-dependent transport systems inner membrane component  32.31 
 
 
271 aa  101  1e-20  Nocardioides sp. JS614  Bacteria  normal  0.220299  n/a   
 
 
-
 
NC_010552  BamMC406_3539  binding-protein-dependent transport systems inner membrane component  34.02 
 
 
264 aa  100  2e-20  Burkholderia ambifaria MC40-6  Bacteria  normal  0.447694  normal 
 
 
-
 
NC_007494  RSP_3393  ABC opine/polyamine transporter, inner membrane subunit  30.09 
 
 
264 aa  100  3e-20  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.381224  n/a   
 
 
-
 
NC_008391  Bamb_5374  binding-protein-dependent transport systems inner membrane component  34.02 
 
 
264 aa  100  3e-20  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.628457 
 
 
-
 
NC_009668  Oant_4153  binding-protein-dependent transport systems inner membrane component  31.19 
 
 
263 aa  100  3e-20  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.829399  n/a   
 
 
-
 
NC_009050  Rsph17029_3039  binding-protein-dependent transport systems inner membrane component  30.09 
 
 
264 aa  100  3e-20  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.645477  normal 
 
 
-
 
NC_008061  Bcen_4730  binding-protein-dependent transport systems inner membrane component  34.02 
 
 
264 aa  99  6e-20  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.293753  n/a   
 
 
-
 
NC_008543  Bcen2424_3633  binding-protein-dependent transport systems inner membrane component  34.02 
 
 
264 aa  99  6e-20  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.332864 
 
 
-
 
NC_010086  Bmul_5060  binding-protein-dependent transport systems inner membrane component  33.51 
 
 
264 aa  99  7e-20  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.183233 
 
 
-
 
NC_011831  Cagg_0404  binding-protein-dependent transport systems inner membrane component  32.59 
 
 
281 aa  98.2  1e-19  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_008698  Tpen_1548  binding-protein-dependent transport systems inner membrane component  35.79 
 
 
270 aa  98.6  1e-19  Thermofilum pendens Hrk 5  Archaea  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B4005  spermidine/putrescine ABC transporter, permease protein  28.69 
 
 
266 aa  97.4  2e-19  Bacillus cereus G9842  Bacteria  normal  hitchhiker  0.000000178374 
 
 
-
 
NC_011725  BCB4264_A1339  spermidine/putrescine ABC transporter, permease protein  28.69 
 
 
266 aa  97.4  2e-19  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_1009  ornithine carbamoyltransferase  28.69 
 
 
266 aa  97.1  3e-19  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_2195  binding-protein-dependent transport systems inner membrane component  30.09 
 
 
276 aa  96.7  3e-19  Thermoanaerobacter sp. X514  Bacteria  decreased coverage  0.000532523  n/a   
 
 
-
 
NC_009972  Haur_1234  binding-protein-dependent transport systems inner membrane component  29.83 
 
 
261 aa  96.7  3e-19  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_1400  spermidine/putrescine ABC transporter, permease protein  28.28 
 
 
266 aa  96.3  5e-19  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS1201  spermidine/putrescine ABC transporter permease  28.28 
 
 
266 aa  96.3  5e-19  Bacillus anthracis str. Sterne  Bacteria  normal  0.440242  n/a   
 
 
-
 
NC_005957  BT9727_1179  spermidine/putrescine ABC transporter, permease  28.28 
 
 
266 aa  96.3  5e-19  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK1181  spermidine/putrescine ABC transporter, permease  28.28 
 
 
266 aa  96.3  5e-19  Bacillus cereus E33L  Bacteria  normal  0.0752832  n/a   
 
 
-
 
NC_009620  Smed_4977  binding-protein-dependent transport systems inner membrane component  26.11 
 
 
288 aa  96.3  5e-19  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.0547171 
 
 
-
 
NC_007530  GBAA_1299  spermidine/putrescine ABC transporter permease  28.28 
 
 
266 aa  96.3  5e-19  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_1377  spermidine/putrescine ABC transporter, permease protein  28.28 
 
 
266 aa  96.3  5e-19  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.0000768374 
 
 
-
 
NC_009439  Pmen_3449  binding-protein-dependent transport systems inner membrane component  29.38 
 
 
269 aa  95.9  5e-19  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.413551 
 
 
-
 
NC_008390  Bamb_1593  binding-protein-dependent transport systems inner membrane component  33.5 
 
 
307 aa  95.9  6e-19  Burkholderia ambifaria AMMD  Bacteria  normal  0.0707466  n/a   
 
 
-
 
NC_010551  BamMC406_1612  binding-protein-dependent transport systems inner membrane component  33.5 
 
 
307 aa  95.9  6e-19  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.142547 
 
 
-
 
NC_012848  Rleg_5387  binding-protein-dependent transport systems inner membrane component  36.08 
 
 
285 aa  95.9  6e-19  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.76333 
 
 
-
 
NC_004578  PSPTO_2522  ABC transporter, permease protein  30.28 
 
 
264 aa  95.9  7e-19  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_16640  ABC-type sugar transport system, permease component  28.7 
 
 
266 aa  95.5  8e-19  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.961926  normal 
 
 
-
 
NC_007760  Adeh_4134  ABC sugar transporter, inner membrane subunit  29.85 
 
 
295 aa  94.7  1e-18  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_008060  Bcen_1208  binding-protein-dependent transport systems inner membrane component  32.51 
 
 
307 aa  94.7  1e-18  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_1687  binding-protein-dependent transport systems inner membrane component  32.51 
 
 
307 aa  94.7  1e-18  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_010508  Bcenmc03_1659  binding-protein-dependent transport systems inner membrane component  32.51 
 
 
307 aa  94.7  1e-18  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.761483  normal  0.336927 
 
 
-
 
NC_007510  Bcep18194_A4848  ABC transporter, inner membrane subunit  32.52 
 
 
310 aa  94.4  2e-18  Burkholderia sp. 383  Bacteria  normal  0.432693  hitchhiker  0.000811543 
 
 
-
 
NC_010623  Bphy_4446  binding-protein-dependent transport systems inner membrane component  31.67 
 
 
301 aa  94  2e-18  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_0448  binding-protein-dependent transport systems inner membrane component  34.85 
 
 
275 aa  94  2e-18  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_3207  binding-protein-dependent transport systems inner membrane component  31.94 
 
 
264 aa  94  2e-18  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_008688  Pden_5050  binding-protein-dependent transport systems inner membrane component  31.51 
 
 
262 aa  94.4  2e-18  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_1418  binding-protein-dependent transport systems inner membrane component  30.3 
 
 
276 aa  94.4  2e-18  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_011989  Avi_2708  ABC transporter membrane spanning protein (polyamine)  29.2 
 
 
264 aa  94.4  2e-18  Agrobacterium vitis S4  Bacteria  normal  0.319241  n/a   
 
 
-
 
NC_010625  Bphy_6628  binding-protein-dependent transport systems inner membrane component  32.47 
 
 
264 aa  94  2e-18  Burkholderia phymatum STM815  Bacteria  normal  0.381273  normal 
 
 
-
 
NC_004310  BR0237  sugar ABC transporter, permease protein  25.22 
 
 
291 aa  94  3e-18  Brucella suis 1330  Bacteria  normal  0.963709  n/a   
 
 
-
 
NC_014210  Ndas_3353  binding-protein-dependent transport systems inner membrane component  31.14 
 
 
299 aa  93.6  3e-18  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_011145  AnaeK_4265  binding-protein-dependent transport systems inner membrane component  29.35 
 
 
293 aa  93.6  3e-18  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_1203  ornithine carbamoyltransferase  28.28 
 
 
266 aa  93.6  3e-18  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_010084  Bmul_1559  binding-protein-dependent transport systems inner membrane component  32.52 
 
 
307 aa  93.6  3e-18  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.37571  normal  0.155307 
 
 
-
 
NC_009505  BOV_0230  sugar ABC transporter, permease protein  25.22 
 
 
291 aa  94  3e-18  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_0670  binding-protein-dependent transport systems inner membrane component  34.56 
 
 
266 aa  93.6  3e-18  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.295376 
 
 
-
 
NC_011891  A2cp1_4287  binding-protein-dependent transport systems inner membrane component  29.35 
 
 
293 aa  93.6  3e-18  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_013169  Ksed_20470  carbohydrate ABC transporter membrane protein  30.61 
 
 
289 aa  93.2  4e-18  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.0780045  normal  0.389193 
 
 
-
 
NC_008541  Arth_3685  binding-protein-dependent transport systems inner membrane component  30.96 
 
 
299 aa  93.2  4e-18  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_010676  Bphyt_4429  binding-protein-dependent transport systems inner membrane component  32.96 
 
 
264 aa  92.8  5e-18  Burkholderia phytofirmans PsJN  Bacteria  normal  0.186422  normal  0.676109 
 
 
-
 
NC_010676  Bphyt_4282  binding-protein-dependent transport systems inner membrane component  32.13 
 
 
312 aa  92.8  6e-18  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.377243 
 
 
-
 
NC_007005  Psyr_2399  binding-protein dependent transport system inner membrane protein  28.77 
 
 
271 aa  92.4  7e-18  Pseudomonas syringae pv. syringae B728a  Bacteria  decreased coverage  0.00651767  normal  0.388943 
 
 
-
 
NC_013159  Svir_07130  ABC-type spermidine/putrescine transport system, permease component II  30.34 
 
 
290 aa  92.4  7e-18  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.396184  normal 
 
 
-
 
NC_007509  Bcep18194_C6717  ABC spermidine/putrescine transporter, inner membrane subunit  29.53 
 
 
280 aa  92.4  8e-18  Burkholderia sp. 383  Bacteria  decreased coverage  0.00799546  normal 
 
 
-
 
NC_009616  Tmel_1715  binding-protein-dependent transport systems inner membrane component  30.32 
 
 
426 aa  92  9e-18  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_3327  binding-protein-dependent transport systems inner membrane component  32.04 
 
 
278 aa  92  9e-18  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_004578  PSPTO_2665  spermidine/putrescine ABC transporter, permease protein, putative  29.38 
 
 
271 aa  91.7  1e-17  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.0357719  n/a   
 
 
-
 
NC_007948  Bpro_2022  binding-protein-dependent transport systems inner membrane component  31.98 
 
 
299 aa  91.3  1e-17  Polaromonas sp. JS666  Bacteria  normal  normal  0.612103 
 
 
-
 
NC_011982  Avi_8304  ABC transporter  29.17 
 
 
265 aa  91.3  1e-17  Agrobacterium vitis S4  Bacteria  normal  0.0178234  n/a   
 
 
-
 
NC_012852  Rleg_6034  binding-protein-dependent transport systems inner membrane component  30.21 
 
 
259 aa  91.7  1e-17  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.958438 
 
 
-
 
NC_007908  Rfer_0887  binding-protein-dependent transport systems inner membrane component  29.96 
 
 
263 aa  91.3  2e-17  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007952  Bxe_B1684  ABC spermidine/putrescine transporter, inner membrane subunit  29.53 
 
 
300 aa  90.9  2e-17  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.396396 
 
 
-
 
NC_010676  Bphyt_4966  binding-protein-dependent transport systems inner membrane component  29.53 
 
 
295 aa  91.3  2e-17  Burkholderia phytofirmans PsJN  Bacteria  normal  0.102355  normal  0.118273 
 
 
-
 
NC_007005  Psyr_2333  binding-protein dependent transport system inner membrane protein  29.86 
 
 
264 aa  90.1  3e-17  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.161709  normal  0.782854 
 
 
-
 
NC_010625  Bphy_6272  binding-protein-dependent transport systems inner membrane component  31.48 
 
 
280 aa  90.5  3e-17  Burkholderia phymatum STM815  Bacteria  normal  0.596153  normal  0.412675 
 
 
-
 
NC_013947  Snas_2292  binding-protein-dependent transport systems inner membrane component  33.04 
 
 
286 aa  90.1  3e-17  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.277905  normal 
 
 
-
 
NC_007493  RSP_1886  ABC polyamine/opine transporter, inner membrane subunit  31.5 
 
 
302 aa  90.1  4e-17  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.0261044  n/a   
 
 
-
 
NC_007948  Bpro_3945  binding-protein-dependent transport systems inner membrane component  32.66 
 
 
264 aa  89.7  4e-17  Polaromonas sp. JS666  Bacteria  normal  0.334886  normal  0.870267 
 
 
-
 
NC_007948  Bpro_4377  binding-protein-dependent transport systems inner membrane component  26.03 
 
 
265 aa  90.1  4e-17  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_2089  binding-protein-dependent transport systems inner membrane component  29.86 
 
 
268 aa  89.7  4e-17  Pseudomonas putida GB-1  Bacteria  normal  0.217099  normal 
 
 
-
 
NC_009012  Cthe_1018  binding-protein-dependent transport systems inner membrane component  29.67 
 
 
289 aa  90.1  4e-17  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.062951  n/a   
 
 
-
 
NC_009049  Rsph17029_0533  binding-protein-dependent transport systems inner membrane component  31.5 
 
 
302 aa  90.1  4e-17  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_1033  binding-protein-dependent transport systems inner membrane component  32.09 
 
 
550 aa  89.7  5e-17  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.957073  normal 
 
 
-
 
NC_009664  Krad_1115  binding-protein-dependent transport systems inner membrane component  30.47 
 
 
280 aa  89.4  5e-17  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.565272 
 
 
-
 
NC_010681  Bphyt_1894  binding-protein-dependent transport systems inner membrane component  28.93 
 
 
265 aa  89.4  5e-17  Burkholderia phytofirmans PsJN  Bacteria  hitchhiker  0.00977235  normal  0.387076 
 
 
-
 
NC_007952  Bxe_B0748  polyamine/opine/phosphonate ABC transporter inner membrane protein  32.24 
 
 
264 aa  89.4  6e-17  Burkholderia xenovorans LB400  Bacteria  normal  0.467059  normal 
 
 
-
 
NC_013946  Mrub_2088  binding-protein-dependent transport systems inner membrane component  29.44 
 
 
282 aa  89.4  6e-17  Meiothermus ruber DSM 1279  Bacteria  hitchhiker  0.00655693  normal  0.897951 
 
 
-
 
NC_009636  Smed_2144  binding-protein-dependent transport systems inner membrane component  30.15 
 
 
288 aa  89.4  6e-17  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_3816  binding-protein-dependent transport systems inner membrane component  29.38 
 
 
269 aa  89  7e-17  Pseudomonas putida KT2440  Bacteria  decreased coverage  0.0037178  normal  0.4746 
 
 
-
 
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