More than 300 homologs were found in PanDaTox collection
for query gene Mnod_6164 on replicon NC_011894
Organism: Methylobacterium nodulans ORS 2060



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011894  Mnod_6164  transcriptional regulator, Crp/Fnr family  100 
 
 
247 aa  495  1e-139  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.257657  n/a   
 
 
-
 
NC_010338  Caul_0629  transcriptional regulator FixK  40.09 
 
 
215 aa  145  5e-34  Caulobacter sp. K31  Bacteria  normal  0.595222  normal  0.236212 
 
 
-
 
NC_010511  M446_0946  Crp/FNR family transcriptional regulator  46.07 
 
 
253 aa  136  3.0000000000000003e-31  Methylobacterium sp. 4-46  Bacteria  normal  0.336903  normal 
 
 
-
 
NC_011757  Mchl_1557  transcriptional regulator, Crp/Fnr family  40.21 
 
 
250 aa  135  5e-31  Methylobacterium chloromethanicum CM4  Bacteria  decreased coverage  0.00717235  normal 
 
 
-
 
NC_011894  Mnod_3926  transcriptional regulator, Crp/Fnr family  42.11 
 
 
238 aa  135  6.0000000000000005e-31  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_5030  transcriptional regulator, Crp/Fnr family  42.11 
 
 
238 aa  135  6.0000000000000005e-31  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_1357  cyclic nucleotide-binding  39.69 
 
 
250 aa  135  8e-31  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.395788 
 
 
-
 
NC_010511  M446_6132  Crp/FNR family transcriptional regulator  42.86 
 
 
245 aa  134  1.9999999999999998e-30  Methylobacterium sp. 4-46  Bacteria  normal  0.0884478  normal 
 
 
-
 
NC_011894  Mnod_0422  transcriptional regulator, Crp/Fnr family  43.75 
 
 
246 aa  133  3e-30  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_1302  transcriptional regulator, Crp/Fnr family  40.54 
 
 
254 aa  131  9e-30  Methylobacterium populi BJ001  Bacteria  normal  0.0109091  normal 
 
 
-
 
NC_009485  BBta_5746  Crp/FNR family transcriptional regulator  41.28 
 
 
237 aa  129  3e-29  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.765257  normal 
 
 
-
 
NC_009720  Xaut_1746  CRP/FNR family transcriptional regulator  38.46 
 
 
236 aa  129  4.0000000000000003e-29  Xanthobacter autotrophicus Py2  Bacteria  normal  0.753218  normal  0.546792 
 
 
-
 
NC_009719  Plav_2039  CRP/FNR family transcriptional regulator  34.76 
 
 
242 aa  129  4.0000000000000003e-29  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.191538  hitchhiker  0.00387918 
 
 
-
 
NC_010505  Mrad2831_2581  Crp/FNR family transcriptional regulator  39.18 
 
 
222 aa  124  1e-27  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_3505  regulatory protein Crp  40.31 
 
 
229 aa  124  2e-27  Methylobacterium extorquens PA1  Bacteria  normal  0.021842  normal 
 
 
-
 
NC_009484  Acry_1631  CRP/FNR family transcriptional regulator  38.5 
 
 
310 aa  124  2e-27  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_3812  transcriptional regulator, Crp/Fnr family  40.31 
 
 
229 aa  123  2e-27  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_6107  Crp/FNR family transcriptional regulator  36.45 
 
 
227 aa  124  2e-27  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0266042 
 
 
-
 
NC_007964  Nham_1951  transcriptional regulator FixK  35.6 
 
 
231 aa  123  3e-27  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_2457  Crp/FNR family transcriptional regulator  39.01 
 
 
204 aa  122  5e-27  Caulobacter sp. K31  Bacteria  normal  0.325923  normal  0.600278 
 
 
-
 
NC_009621  Smed_6270  transcriptional regulator FixK  37.82 
 
 
211 aa  121  9.999999999999999e-27  Sinorhizobium medicae WSM419  Bacteria  normal  0.967473  normal  0.128199 
 
 
-
 
NC_007958  RPD_1340  transcriptional regulator FixK  33.91 
 
 
229 aa  120  1.9999999999999998e-26  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.324269  normal 
 
 
-
 
NC_011365  Gdia_1984  transcriptional regulator, Crp/Fnr family  40.43 
 
 
250 aa  120  3e-26  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.312779  normal 
 
 
-
 
NC_009485  BBta_2786  transcriptional regulator FixK  36.13 
 
 
229 aa  119  3.9999999999999996e-26  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0460697  normal  0.11454 
 
 
-
 
NC_011894  Mnod_5386  transcriptional regulator, Crp/Fnr family  38.74 
 
 
230 aa  119  4.9999999999999996e-26  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.662421  n/a   
 
 
-
 
NC_007778  RPB_1361  transcriptional regulator FixK  35.08 
 
 
229 aa  117  1.9999999999999998e-25  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.0646149  normal 
 
 
-
 
NC_007406  Nwi_1036  transcriptional regulator FixK  35.33 
 
 
231 aa  116  3e-25  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_4713  transcriptional regulator, Crp/Fnr family  41.38 
 
 
239 aa  116  3e-25  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.557049  n/a   
 
 
-
 
NC_007925  RPC_4055  transcriptional regulator FixK  35.08 
 
 
229 aa  116  3.9999999999999997e-25  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_4729  transcriptional regulator FixK  34.55 
 
 
230 aa  115  5e-25  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_6927  Crp/FNR family transcriptional regulator  38.22 
 
 
227 aa  115  5e-25  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.422372 
 
 
-
 
NC_007964  Nham_0870  transcriptional regulator FixK  36.75 
 
 
227 aa  115  6.9999999999999995e-25  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_1377  Crp/FNR family transcriptional regulator  39.89 
 
 
239 aa  114  1.0000000000000001e-24  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_1357  Crp/Fnr family transcriptional regulator  38.51 
 
 
239 aa  114  1.0000000000000001e-24  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_009667  Oant_2634  CRP/FNR family transcriptional regulator  35.42 
 
 
249 aa  114  2.0000000000000002e-24  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_4039  Crp/FNR family transcriptional regulator  39.33 
 
 
239 aa  113  3e-24  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.70749  normal 
 
 
-
 
NC_010725  Mpop_3889  transcriptional regulator, Crp/Fnr family  40.72 
 
 
229 aa  112  4.0000000000000004e-24  Methylobacterium populi BJ001  Bacteria  normal  normal  0.128439 
 
 
-
 
NC_010505  Mrad2831_3277  Crp/FNR family transcriptional regulator  35.94 
 
 
226 aa  112  7.000000000000001e-24  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_009484  Acry_0576  CRP/FNR family transcriptional regulator  37.08 
 
 
235 aa  111  9e-24  Acidiphilium cryptum JF-5  Bacteria  normal  0.670039  n/a   
 
 
-
 
NC_011894  Mnod_4871  transcriptional regulator, Crp/Fnr family  36.72 
 
 
228 aa  110  2.0000000000000002e-23  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_0408  Crp/FNR family transcriptional regulator  39.88 
 
 
230 aa  110  2.0000000000000002e-23  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_009428  Rsph17025_0532  CRP/FNR family transcriptional regulator  34.63 
 
 
248 aa  110  3e-23  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.283437 
 
 
-
 
NC_010338  Caul_2975  Crp/FNR family transcriptional regulator  35.09 
 
 
220 aa  107  1e-22  Caulobacter sp. K31  Bacteria  normal  0.169439  normal  0.307783 
 
 
-
 
NC_007643  Rru_A3322  Crp/FNR family transcriptional regulator  35.52 
 
 
262 aa  107  1e-22  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0702622  n/a   
 
 
-
 
NC_009621  Smed_5184  transcriptional regulator FixK  34.54 
 
 
211 aa  107  1e-22  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.639909 
 
 
-
 
NC_007493  RSP_0698  Crp-Fnr regulatory protein (FnrL)  32.87 
 
 
248 aa  105  5e-22  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_2353  CRP/FNR family transcriptional regulator  32.87 
 
 
248 aa  105  5e-22  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.689366  normal  0.139893 
 
 
-
 
NC_009952  Dshi_0660  transcriptional regulator  34.31 
 
 
249 aa  105  5e-22  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_007960  Nham_4375  Crp/FNR family transcriptional regulator  35.54 
 
 
268 aa  105  7e-22  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_004310  BR0654  Crp/FNR family transcriptional regulator  34.68 
 
 
248 aa  104  1e-21  Brucella suis 1330  Bacteria  normal  0.48838  n/a   
 
 
-
 
NC_011666  Msil_1823  transcriptional regulator, Crp/Fnr family  34.59 
 
 
234 aa  103  4e-21  Methylocella silvestris BL2  Bacteria  n/a    normal  0.0333657 
 
 
-
 
NC_009505  BOV_0647  nitrogen fixation regulation protein fixk  34.68 
 
 
251 aa  102  5e-21  Brucella ovis ATCC 25840  Bacteria  normal  0.774151  n/a   
 
 
-
 
NC_007802  Jann_3858  Crp/FNR family transcriptional regulator  34.31 
 
 
248 aa  102  6e-21  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_2220  transcriptional regulator FixK  36.84 
 
 
224 aa  102  8e-21  Chelativorans sp. BNC1  Bacteria  normal  0.552775  n/a   
 
 
-
 
NC_009901  Spea_2222  fumarate/nitrate reduction transcriptional regulator  31.96 
 
 
250 aa  101  9e-21  Shewanella pealeana ATCC 700345  Bacteria  normal  0.0665535  n/a   
 
 
-
 
NC_009665  Shew185_2162  fumarate/nitrate reduction transcriptional regulator  32.47 
 
 
250 aa  101  1e-20  Shewanella baltica OS185  Bacteria  normal  0.914647  n/a   
 
 
-
 
NC_011663  Sbal223_2222  fumarate/nitrate reduction transcriptional regulator  32.47 
 
 
250 aa  101  1e-20  Shewanella baltica OS223  Bacteria  decreased coverage  0.00000942023  normal  0.178468 
 
 
-
 
NC_011353  ECH74115_1981  fumarate/nitrate reduction transcriptional regulator  31.44 
 
 
250 aa  101  1e-20  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal  0.320226 
 
 
-
 
NC_009997  Sbal195_2212  fumarate/nitrate reduction transcriptional regulator  32.47 
 
 
250 aa  101  1e-20  Shewanella baltica OS195  Bacteria  hitchhiker  0.00299596  normal  0.266977 
 
 
-
 
NC_009035  Sbal_4495  fumarate/nitrate reduction transcriptional regulator  32.47 
 
 
250 aa  101  1e-20  Shewanella baltica OS155  Bacteria  n/a    n/a   
 
 
-
 
NC_007778  RPB_2158  Crp/FNR family transcriptional regulator  35.32 
 
 
208 aa  101  1e-20  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.198273  normal  0.103025 
 
 
-
 
NC_009052  Sbal_2209  fumarate/nitrate reduction transcriptional regulator  32.47 
 
 
250 aa  101  1e-20  Shewanella baltica OS155  Bacteria  hitchhiker  0.00613295  n/a   
 
 
-
 
CP001637  EcDH1_2311  transcriptional regulator, Crp/Fnr family  31.44 
 
 
250 aa  100  2e-20  Escherichia coli DH1  Bacteria  normal  0.144598  n/a   
 
 
-
 
NC_010468  EcolC_2291  fumarate/nitrate reduction transcriptional regulator  31.44 
 
 
250 aa  100  2e-20  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_010498  EcSMS35_1788  fumarate/nitrate reduction transcriptional regulator  31.44 
 
 
250 aa  100  2e-20  Escherichia coli SMS-3-5  Bacteria  normal  0.765276  normal 
 
 
-
 
NC_009800  EcHS_A1450  fumarate/nitrate reduction transcriptional regulator  31.44 
 
 
250 aa  100  2e-20  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E1575  fumarate/nitrate reduction transcriptional regulator  31.44 
 
 
250 aa  100  2e-20  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_013889  TK90_0787  transcriptional regulator, Crp/Fnr family  32.41 
 
 
243 aa  100  2e-20  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal 
 
 
-
 
NC_009801  EcE24377A_1546  fumarate/nitrate reduction transcriptional regulator  31.44 
 
 
250 aa  100  2e-20  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_009467  Acry_3214  CRP/FNR family transcriptional regulator  33.33 
 
 
230 aa  99.8  4e-20  Acidiphilium cryptum JF-5  Bacteria  normal  0.939046  n/a   
 
 
-
 
NC_010676  Bphyt_6315  transcriptional regulator, Crp/Fnr family  31.64 
 
 
403 aa  99.8  4e-20  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_011083  SeHA_C1845  fumarate/nitrate reduction transcriptional regulator  32.37 
 
 
250 aa  99.8  4e-20  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.918423  normal 
 
 
-
 
NC_011205  SeD_A1673  fumarate/nitrate reduction transcriptional regulator  32.37 
 
 
250 aa  99.8  4e-20  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.349784  normal  0.0983377 
 
 
-
 
NC_011149  SeAg_B1491  fumarate/nitrate reduction transcriptional regulator  32.37 
 
 
250 aa  99.8  4e-20  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0202312  n/a   
 
 
-
 
NC_011080  SNSL254_A1783  fumarate/nitrate reduction transcriptional regulator  32.37 
 
 
250 aa  99.8  4e-20  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.251439 
 
 
-
 
NC_009475  BBta_p0192  CRP family transcriptional regulator  34.43 
 
 
230 aa  99.8  4e-20  Bradyrhizobium sp. BTAi1  Bacteria  n/a    normal 
 
 
-
 
NC_011094  SeSA_A1785  fumarate/nitrate reduction transcriptional regulator  32.37 
 
 
250 aa  99.8  4e-20  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.377507  normal  0.141635 
 
 
-
 
NC_008322  Shewmr7_1961  fumarate/nitrate reduction transcriptional regulator  32.56 
 
 
250 aa  99.4  4e-20  Shewanella sp. MR-7  Bacteria  normal  hitchhiker  0.00754009 
 
 
-
 
NC_012912  Dd1591_2081  fumarate/nitrate reduction transcriptional regulator  30.57 
 
 
250 aa  99.4  5e-20  Dickeya zeae Ech1591  Bacteria  normal  0.0488524  n/a   
 
 
-
 
NC_008345  Sfri_2018  fumarate/nitrate reduction transcriptional regulator  31.98 
 
 
252 aa  99.4  5e-20  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.831368  n/a   
 
 
-
 
NC_008577  Shewana3_2115  fumarate/nitrate reduction transcriptional regulator  32.56 
 
 
250 aa  99  6e-20  Shewanella sp. ANA-3  Bacteria  normal  0.508722  normal  0.0650668 
 
 
-
 
NC_008321  Shewmr4_2014  fumarate/nitrate reduction transcriptional regulator  32.56 
 
 
250 aa  99  6e-20  Shewanella sp. MR-4  Bacteria  normal  decreased coverage  0.00000000422436 
 
 
-
 
NC_009436  Ent638_1853  fumarate/nitrate reduction transcriptional regulator  31.79 
 
 
250 aa  98.6  7e-20  Enterobacter sp. 638  Bacteria  normal  normal  0.755428 
 
 
-
 
NC_012917  PC1_2105  fumarate/nitrate reduction transcriptional regulator  31.09 
 
 
248 aa  98.6  8e-20  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0944449  n/a   
 
 
-
 
NC_009438  Sputcn32_1951  fumarate/nitrate reduction transcriptional regulator  31.96 
 
 
250 aa  98.6  9e-20  Shewanella putrefaciens CN-32  Bacteria  normal  0.80493  n/a   
 
 
-
 
NC_013421  Pecwa_2398  fumarate/nitrate reduction transcriptional regulator  31.09 
 
 
248 aa  98.2  1e-19  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_1207  Crp/FNR family transcriptional regulator  37.43 
 
 
264 aa  97.8  1e-19  Polaromonas sp. JS666  Bacteria  normal  0.494469  normal 
 
 
-
 
NC_010506  Swoo_2417  fumarate/nitrate reduction transcriptional regulator  30.93 
 
 
249 aa  97.1  2e-19  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0646393  decreased coverage  0.000000159166 
 
 
-
 
NC_009511  Swit_1945  Crp/FNR family transcriptional regulator  36.84 
 
 
242 aa  97.1  2e-19  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_010531  Pnec_1356  transcriptional regulator, Crp/Fnr family  33.51 
 
 
256 aa  96.7  3e-19  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal  0.0588975 
 
 
-
 
NC_007614  Nmul_A1773  Crp/FNR family transcriptional regulator  28.37 
 
 
263 aa  96.7  3e-19  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_1993  fumarate/nitrate reduction transcriptional regulator  30.93 
 
 
249 aa  96.7  3e-19  Shewanella loihica PV-4  Bacteria  normal  0.238952  normal 
 
 
-
 
NC_012560  Avin_19910  Fnr-like negative transcriptional regulator of CydAB  33.51 
 
 
244 aa  97.1  3e-19  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_2360  transcriptional regulator, Crp/Fnr family  32.94 
 
 
240 aa  96.7  3e-19  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.948966  hitchhiker  0.00636029 
 
 
-
 
NC_009439  Pmen_2615  CRP/FNR family transcriptional regulator  34.24 
 
 
244 aa  96.3  4e-19  Pseudomonas mendocina ymp  Bacteria  hitchhiker  0.00240538  normal  0.855877 
 
 
-
 
NC_012880  Dd703_1864  fumarate/nitrate reduction transcriptional regulator  30.57 
 
 
250 aa  96.3  4e-19  Dickeya dadantii Ech703  Bacteria  normal  0.856056  n/a   
 
 
-
 
NC_003910  CPS_1987  fumarate/nitrate reduction transcriptional regulator  30.34 
 
 
239 aa  95.9  5e-19  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_2118  transcriptional regulator, Crp/Fnr family  32.35 
 
 
240 aa  95.9  6e-19  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  hitchhiker  0.00291012 
 
 
-
 
NC_009831  Ssed_2219  fumarate/nitrate reduction transcriptional regulator  30.41 
 
 
249 aa  95.9  6e-19  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_2356  fumarate/nitrate reduction transcriptional regulator  31.46 
 
 
254 aa  95.5  7e-19  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
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