43 homologs were found in PanDaTox collection
for query gene Hoch_1507 on replicon NC_013440
Organism: Haliangium ochraceum DSM 14365



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013440  Hoch_1507  transcriptional regulator, XRE family  100 
 
 
260 aa  513  1e-144  Haliangium ochraceum DSM 14365  Bacteria  hitchhiker  0.00000450158  hitchhiker  0.000000420846 
 
 
-
 
NC_007644  Moth_1715  XRE family transcriptional regulator  31.62 
 
 
152 aa  45.8  0.0007  Moorella thermoacetica ATCC 39073  Bacteria  decreased coverage  0.0000000000119777  normal  0.864438 
 
 
-
 
NC_013510  Tcur_2489  transcriptional regulator, XRE family  28.57 
 
 
478 aa  45.8  0.0007  Thermomonospora curvata DSM 43183  Bacteria  decreased coverage  0.00109484  n/a   
 
 
-
 
NC_010506  Swoo_0683  XRE family transcriptional regulator  35.38 
 
 
239 aa  45.8  0.0007  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_008044  TM1040_1733  XRE family transcriptional regulator  29.31 
 
 
133 aa  45.4  0.0008  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_013385  Adeg_0117  transcriptional regulator, XRE family  32.39 
 
 
118 aa  45.1  0.001  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_1878  transcriptional regulator, XRE family  37.5 
 
 
70 aa  45.1  0.001  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_010679  Bphyt_7274  transcriptional regulator, XRE family  35.21 
 
 
79 aa  44.7  0.001  Burkholderia phytofirmans PsJN  Bacteria  normal  0.21577  normal  0.150525 
 
 
-
 
NC_009428  Rsph17025_0413  helix-turn-helix domain-containing protein  31.21 
 
 
132 aa  45.1  0.001  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_1430  transcriptional regulator, XRE family  37.5 
 
 
490 aa  44.3  0.002  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.236575  normal 
 
 
-
 
NC_013131  Caci_8704  transcriptional regulator, XRE family  37.33 
 
 
223 aa  44.3  0.002  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.264618 
 
 
-
 
NC_009831  Ssed_3859  hypothetical protein  36.36 
 
 
233 aa  44.7  0.002  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_4320  XRE family transcriptional regulator  40 
 
 
181 aa  43.5  0.003  Shewanella woodyi ATCC 51908  Bacteria  normal  0.810122  normal 
 
 
-
 
NC_013132  Cpin_4788  transcriptional regulator, XRE family  33.85 
 
 
114 aa  43.9  0.003  Chitinophaga pinensis DSM 2588  Bacteria  hitchhiker  0.0000000200631  normal  0.763075 
 
 
-
 
NC_009953  Sare_3652  XRE family transcriptional regulator  37.84 
 
 
196 aa  43.5  0.003  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00533728 
 
 
-
 
NC_008044  TM1040_1345  XRE family transcriptional regulator  30.38 
 
 
209 aa  43.5  0.003  Ruegeria sp. TM1040  Bacteria  normal  0.200207  normal 
 
 
-
 
NC_008261  CPF_1021  DNA-binding protein  40 
 
 
180 aa  43.9  0.003  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.00000053147  n/a   
 
 
-
 
NC_009953  Sare_2429  XRE family transcriptional regulator  38.03 
 
 
191 aa  43.1  0.004  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.0848952 
 
 
-
 
NC_009455  DehaBAV1_0299  XRE family transcriptional regulator  35 
 
 
71 aa  43.1  0.004  Dehalococcoides sp. BAV1  Bacteria  hitchhiker  0.00000289962  n/a   
 
 
-
 
NC_009455  DehaBAV1_0101  XRE family transcriptional regulator  35 
 
 
71 aa  43.1  0.004  Dehalococcoides sp. BAV1  Bacteria  hitchhiker  0.000000391644  n/a   
 
 
-
 
NC_009380  Strop_3404  cupin 2 domain-containing protein  37.84 
 
 
215 aa  43.1  0.004  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_013204  Elen_2559  transcriptional regulator, XRE family  33.87 
 
 
71 aa  43.1  0.004  Eggerthella lenta DSM 2243  Bacteria  normal  normal 
 
 
-
 
NC_012034  Athe_2435  transcriptional regulator, XRE family  36.07 
 
 
105 aa  43.1  0.004  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_0763  transcriptional regulator  32.43 
 
 
130 aa  42.7  0.005  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal  0.305784 
 
 
-
 
NC_014165  Tbis_1864  XRE family transcriptional regulator  30 
 
 
490 aa  43.1  0.005  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_008261  CPF_1604  DNA-binding protein  30.77 
 
 
114 aa  43.1  0.005  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.00115974  n/a   
 
 
-
 
NC_008530  LGAS_0575  XRE family transcriptional regulator  35.53 
 
 
115 aa  43.1  0.005  Lactobacillus gasseri ATCC 33323  Bacteria  hitchhiker  0.00000000000142648  normal  0.969931 
 
 
-
 
NC_008530  LGAS_0637  XRE family transcriptional regulator  35.53 
 
 
115 aa  43.1  0.005  Lactobacillus gasseri ATCC 33323  Bacteria  hitchhiker  0.00000152617  normal 
 
 
-
 
NC_012669  Bcav_1423  transcriptional regulator, XRE family  36.36 
 
 
195 aa  43.1  0.005  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_011886  Achl_0635  transcriptional regulator, XRE family  40 
 
 
198 aa  42.7  0.006  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_010465  YPK_1628  XRE family transcriptional regulator  34.92 
 
 
133 aa  42.7  0.006  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_3407  transcriptional regulator, XRE family  33.77 
 
 
192 aa  42.7  0.007  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_1696  transcriptional regulator, XRE family  36.23 
 
 
371 aa  42.7  0.007  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.324356  n/a   
 
 
-
 
NC_013205  Aaci_0207  transcriptional regulator, XRE family  31.15 
 
 
106 aa  42.4  0.007  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  hitchhiker  0.0000425004  n/a   
 
 
-
 
NC_007802  Jann_2653  XRE family transcriptional regulator  35.62 
 
 
133 aa  42.4  0.007  Jannaschia sp. CCS1  Bacteria  normal  0.0271139  normal  0.0108721 
 
 
-
 
NC_007333  Tfu_1378  helix-hairpin-helix DNA-binding motif-containing protein  37.5 
 
 
481 aa  42.4  0.007  Thermobifida fusca YX  Bacteria  normal  0.84072  n/a   
 
 
-
 
NC_007963  Csal_2087  XRE family transcriptional regulator  36.07 
 
 
195 aa  42.4  0.007  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_0632  DNA-binding protein  40 
 
 
181 aa  42.4  0.008  Shewanella sediminis HAW-EB3  Bacteria  normal  0.404047  normal 
 
 
-
 
NC_013132  Cpin_4781  transcriptional regulator, XRE family  32.31 
 
 
113 aa  42.4  0.008  Chitinophaga pinensis DSM 2588  Bacteria  hitchhiker  0.00061071  normal  0.699893 
 
 
-
 
NC_013595  Sros_7925  putative transcriptional regulator, XRE family  35.29 
 
 
199 aa  42.4  0.008  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.421089 
 
 
-
 
NC_014210  Ndas_1566  transcriptional regulator, XRE family  36.49 
 
 
202 aa  42  0.009  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.0862847 
 
 
-
 
NC_013235  Namu_4666  transcriptional regulator, XRE family  35.38 
 
 
197 aa  42  0.01  Nakamurella multipartita DSM 44233  Bacteria  normal  0.223091  normal 
 
 
-
 
NC_013093  Amir_4868  transcriptional regulator, XRE family  32.84 
 
 
124 aa  42  0.01  Actinosynnema mirum DSM 43827  Bacteria  normal  0.62292  n/a   
 
 
-
 
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