Gene Ssed_0632 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_0632 
Symbol 
ID5610846 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp772074 
End bp772619 
Gene Length546 bp 
Protein Length181 aa 
Translation table11 
GC content53% 
IMG OID640931477 
ProductDNA-binding protein 
Protein accessionYP_001472372 
Protein GI157373772 
COG category[K] Transcription 
COG ID[COG1476] Predicted transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.404047 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones42 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCAACC CCATCAACGA AGGTATCAAG CGCCTGCGTG CCCAGCATAA GCTGACTCAA 
ATAGAGCTGG CCGAGATGGC CGGGATCCCC CGAGCGACTC TTGCCAATAT GGAGGGGGCG
AACAGCAATC CCAGTATCAG CGTCGTGATG AAGGTCGCTC AGGCACTTGG AGTCACGGTC
GACGACCTGA TCACCCGCAG ACAATCTGTG CATGTCACTA AGGTCGAAAG AAAGGATATG
CCGGTATCTC ATCAACACGA CGGCAAGTTT ATCAGTACCC GCACCAGCCC CATCAGCACC
CAAAACCTGC AGATCAATGA TGTGATCATG ATGCCCGGCT GCAACACCAA AGGTGTGCCC
CATCCCGAAG GCAGCCATGA ACTCTTTCTC TGTCTGGAGG GCACTGCCAC TTTAGAGGTT
CAGGGAGAGA TGTTCGAGAT AGAGGCGGGA AATCTCACCT ATTTTAAGGG TCACCTTCCC
CACCAGTACG GCAACGCCAG TTTAAAACCA GTTCATGCCG TGGTTGTCGT ATTTATGCAG
AAGTAA
 
Protein sequence
MANPINEGIK RLRAQHKLTQ IELAEMAGIP RATLANMEGA NSNPSISVVM KVAQALGVTV 
DDLITRRQSV HVTKVERKDM PVSHQHDGKF ISTRTSPIST QNLQINDVIM MPGCNTKGVP
HPEGSHELFL CLEGTATLEV QGEMFEIEAG NLTYFKGHLP HQYGNASLKP VHAVVVVFMQ
K