| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0632 |
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| Symbol | |
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| ID | 5610846 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 772074 |
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| End bp | 772619 |
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| Gene Length | 546 bp |
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| Protein Length | 181 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640931477 |
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| Product | DNA-binding protein |
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| Protein accession | YP_001472372 |
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| Protein GI | 157373772 |
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| COG category | [K] Transcription |
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| COG ID | [COG1476] Predicted transcriptional regulators |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.404047 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCCAACC CCATCAACGA AGGTATCAAG CGCCTGCGTG CCCAGCATAA GCTGACTCAA
ATAGAGCTGG CCGAGATGGC CGGGATCCCC CGAGCGACTC TTGCCAATAT GGAGGGGGCG
AACAGCAATC CCAGTATCAG CGTCGTGATG AAGGTCGCTC AGGCACTTGG AGTCACGGTC
GACGACCTGA TCACCCGCAG ACAATCTGTG CATGTCACTA AGGTCGAAAG AAAGGATATG
CCGGTATCTC ATCAACACGA CGGCAAGTTT ATCAGTACCC GCACCAGCCC CATCAGCACC
CAAAACCTGC AGATCAATGA TGTGATCATG ATGCCCGGCT GCAACACCAA AGGTGTGCCC
CATCCCGAAG GCAGCCATGA ACTCTTTCTC TGTCTGGAGG GCACTGCCAC TTTAGAGGTT
CAGGGAGAGA TGTTCGAGAT AGAGGCGGGA AATCTCACCT ATTTTAAGGG TCACCTTCCC
CACCAGTACG GCAACGCCAG TTTAAAACCA GTTCATGCCG TGGTTGTCGT ATTTATGCAG
AAGTAA
|
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| Protein sequence | MANPINEGIK RLRAQHKLTQ IELAEMAGIP RATLANMEGA NSNPSISVVM KVAQALGVTV
DDLITRRQSV HVTKVERKDM PVSHQHDGKF ISTRTSPIST QNLQINDVIM MPGCNTKGVP
HPEGSHELFL CLEGTATLEV QGEMFEIEAG NLTYFKGHLP HQYGNASLKP VHAVVVVFMQ
K
|
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