More than 300 homologs were found in PanDaTox collection
for query gene HMPREF0424_1056 on replicon NC_013721
Organism: Gardnerella vaginalis 409-05



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013721  HMPREF0424_1056  ABC transporter, permease protein  100 
 
 
294 aa  580  1.0000000000000001e-165  Gardnerella vaginalis 409-05  Bacteria  n/a    normal  0.247507 
 
 
-
 
NC_010816  BLD_0917  dipeptide/oligopeptide/nickel ABC transporter permease  59.71 
 
 
300 aa  327  1.0000000000000001e-88  Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_013174  Jden_1931  binding-protein-dependent transport systems inner membrane component  36.59 
 
 
296 aa  165  1.0000000000000001e-39  Jonesia denitrificans DSM 20603  Bacteria  normal  normal 
 
 
-
 
NC_009668  Oant_2771  binding-protein-dependent transport systems inner membrane component  36.18 
 
 
288 aa  158  9e-38  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_013169  Ksed_26300  ABC-type dipeptide/oligopeptide/nickel transport system, permease component  34.11 
 
 
293 aa  149  5e-35  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal  0.131884 
 
 
-
 
NC_013171  Apre_0389  binding-protein-dependent transport systems inner membrane component  34.88 
 
 
272 aa  147  2.0000000000000003e-34  Anaerococcus prevotii DSM 20548  Bacteria  normal  0.105201  n/a   
 
 
-
 
NC_009667  Oant_1290  binding-protein-dependent transport systems inner membrane component  35.6 
 
 
286 aa  147  3e-34  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.304956  n/a   
 
 
-
 
NC_011773  BCAH820_4609  oligopeptide ABC transporter, oligopeptide-binding protein  30.03 
 
 
299 aa  145  6e-34  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_005945  BAS4391  oligopeptide ABC transporter oligopeptide-binding protein  30.03 
 
 
299 aa  145  6e-34  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_4232  oligopeptide transport system, permease  30.03 
 
 
299 aa  145  6e-34  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_4731  oligopeptide ABC transporter oligopeptide-binding protein  30.03 
 
 
299 aa  145  6e-34  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_05940  ABC-type dipeptide/oligopeptide/nickel transport system, permease component  37.04 
 
 
306 aa  145  1e-33  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.141846 
 
 
-
 
NC_006274  BCZK4244  oligopeptide ABC transporter, permease  29.69 
 
 
299 aa  144  2e-33  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011661  Dtur_0860  binding-protein-dependent transport systems inner membrane component  33.1 
 
 
287 aa  142  6e-33  Dictyoglomus turgidum DSM 6724  Bacteria  hitchhiker  0.000000642732  n/a   
 
 
-
 
NC_011830  Dhaf_0455  binding-protein-dependent transport systems inner membrane component  31.92 
 
 
309 aa  140  3e-32  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_0461  binding-protein-dependent transport systems inner membrane component  34.78 
 
 
285 aa  139  7e-32  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_3150  binding-protein-dependent transport systems inner membrane component  35.39 
 
 
290 aa  138  1e-31  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_0613  binding-protein-dependent transport systems inner membrane component  31.1 
 
 
280 aa  137  3.0000000000000003e-31  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_004311  BRA1010  peptide ABC transporter, permease protein  34.41 
 
 
286 aa  136  4e-31  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009504  BOV_A0952  peptide ABC transporter, permease protein  34 
 
 
286 aa  136  4e-31  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_011988  Avi_5643  ABC transporter  35.06 
 
 
288 aa  133  3.9999999999999996e-30  Agrobacterium vitis S4  Bacteria  decreased coverage  0.00533049  n/a   
 
 
-
 
NC_008786  Veis_4965  binding-protein-dependent transport systems inner membrane component  32.37 
 
 
309 aa  132  5e-30  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.031791  normal 
 
 
-
 
NC_013421  Pecwa_4400  binding-protein-dependent transport systems inner membrane component  33.07 
 
 
299 aa  131  1.0000000000000001e-29  Pectobacterium wasabiae WPP163  Bacteria  normal  0.111328  n/a   
 
 
-
 
NC_013202  Hmuk_1596  binding-protein-dependent transport systems inner membrane component  35.75 
 
 
344 aa  131  1.0000000000000001e-29  Halomicrobium mukohataei DSM 12286  Archaea  normal  normal 
 
 
-
 
NC_011004  Rpal_1408  binding-protein-dependent transport systems inner membrane component  29.01 
 
 
296 aa  131  2.0000000000000002e-29  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.0788732  n/a   
 
 
-
 
NC_012917  PC1_4111  binding-protein-dependent transport systems inner membrane component  33.07 
 
 
299 aa  130  2.0000000000000002e-29  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.553979  n/a   
 
 
-
 
NC_012858  Rleg_6640  binding-protein-dependent transport systems inner membrane component  32.96 
 
 
272 aa  130  2.0000000000000002e-29  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.50093  normal  0.322179 
 
 
-
 
NC_010718  Nther_2403  binding-protein-dependent transport systems inner membrane component  29.52 
 
 
304 aa  130  3e-29  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  hitchhiker  0.0000000292743  normal 
 
 
-
 
NC_008043  TM1040_3435  binding-protein-dependent transport systems inner membrane component  32.14 
 
 
271 aa  130  3e-29  Ruegeria sp. TM1040  Bacteria  normal  0.58374  normal  0.490957 
 
 
-
 
NC_013739  Cwoe_0132  binding-protein-dependent transport systems inner membrane component  34.8 
 
 
300 aa  129  6e-29  Conexibacter woesei DSM 14684  Bacteria  normal  0.765267  normal 
 
 
-
 
NC_004311  BRA0407  peptide ABC transporter, permease protein  30.43 
 
 
302 aa  128  1.0000000000000001e-28  Brucella suis 1330  Bacteria  normal  0.404999  n/a   
 
 
-
 
NC_010320  Teth514_0621  binding-protein-dependent transport systems inner membrane component  27.18 
 
 
310 aa  128  1.0000000000000001e-28  Thermoanaerobacter sp. X514  Bacteria  normal  0.0465132  n/a   
 
 
-
 
NC_008009  Acid345_1395  ABC peptide transporter, inner membrane subunit  32.57 
 
 
288 aa  128  1.0000000000000001e-28  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.064701  decreased coverage  0.00784209 
 
 
-
 
NC_010320  Teth514_0548  binding-protein-dependent transport systems inner membrane component  27.18 
 
 
310 aa  128  1.0000000000000001e-28  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_007355  Mbar_A3674  oligopeptide ABC transporter, permease  30.19 
 
 
279 aa  127  2.0000000000000002e-28  Methanosarcina barkeri str. Fusaro  Archaea  normal  normal  0.0467802 
 
 
-
 
NC_013203  Apar_0958  binding-protein-dependent transport systems inner membrane component  30.8 
 
 
318 aa  127  2.0000000000000002e-28  Atopobium parvulum DSM 20469  Bacteria  normal  0.643704  normal 
 
 
-
 
NC_013743  Htur_2407  binding-protein-dependent transport systems inner membrane component  32.31 
 
 
309 aa  127  3e-28  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_013946  Mrub_1443  binding-protein-dependent transport systems inner membrane component  33.2 
 
 
277 aa  126  3e-28  Meiothermus ruber DSM 1279  Bacteria  normal  0.486684  normal 
 
 
-
 
NC_009504  BOV_A0350  peptide ABC transporter, permease protein  30.04 
 
 
302 aa  126  4.0000000000000003e-28  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_009668  Oant_3090  binding-protein-dependent transport systems inner membrane component  34.51 
 
 
310 aa  126  5e-28  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_013552  DhcVS_930  ABC-type dipeptide/oligopeptide/nickel transport system, permease component  31.56 
 
 
301 aa  125  6e-28  Dehalococcoides sp. VS  Bacteria  normal  0.438382  n/a   
 
 
-
 
NC_007802  Jann_0778  binding-protein-dependent transport systems inner membrane component  29.59 
 
 
274 aa  125  7e-28  Jannaschia sp. CCS1  Bacteria  normal  0.566812  normal 
 
 
-
 
NC_007974  Rmet_4577  binding-protein-dependent transport systems inner membrane protein  31.58 
 
 
308 aa  125  7e-28  Cupriavidus metallidurans CH34  Bacteria  normal  hitchhiker  0.0046213 
 
 
-
 
NC_007912  Sde_2030  oligopeptide ABC transporter permease protein  30.4 
 
 
293 aa  124  1e-27  Saccharophagus degradans 2-40  Bacteria  normal  0.0128641  normal 
 
 
-
 
NC_010625  Bphy_6649  binding-protein-dependent transport systems inner membrane component  29.93 
 
 
294 aa  124  1e-27  Burkholderia phymatum STM815  Bacteria  normal  0.789298  normal 
 
 
-
 
NC_012880  Dd703_0144  binding-protein-dependent transport systems inner membrane component  31.18 
 
 
298 aa  125  1e-27  Dickeya dadantii Ech703  Bacteria  normal  0.0407535  n/a   
 
 
-
 
NC_009253  Dred_2452  binding-protein-dependent transport systems inner membrane component  31.6 
 
 
296 aa  125  1e-27  Desulfotomaculum reducens MI-1  Bacteria  normal  0.0368392  n/a   
 
 
-
 
NC_011004  Rpal_1658  binding-protein-dependent transport systems inner membrane component  29.67 
 
 
303 aa  124  2e-27  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.11217  n/a   
 
 
-
 
NC_012791  Vapar_1216  binding-protein-dependent transport systems inner membrane component  31.7 
 
 
279 aa  124  2e-27  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_0136  binding-protein-dependent transport systems inner membrane component  33.93 
 
 
297 aa  124  2e-27  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_013204  Elen_1222  binding-protein-dependent transport systems inner membrane component  30.71 
 
 
310 aa  123  3e-27  Eggerthella lenta DSM 2243  Bacteria  normal  normal  0.0299978 
 
 
-
 
NC_011146  Gbem_2642  binding-protein-dependent transport systems inner membrane component  32.64 
 
 
280 aa  123  4e-27  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_4051  binding-protein dependent transport system inner membrane protein  29.64 
 
 
306 aa  123  4e-27  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.722195  normal 
 
 
-
 
NC_009972  Haur_1899  binding-protein-dependent transport systems inner membrane component  28.82 
 
 
297 aa  123  4e-27  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2032  binding-protein-dependent transport systems inner membrane component  30.99 
 
 
285 aa  122  6e-27  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_5257  putative ABC transporter (permease protein)  29.01 
 
 
296 aa  122  8e-27  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.216925  normal  0.133052 
 
 
-
 
NC_003909  BCE_0250  oligopeptide ABC transporter, permease protein  30.34 
 
 
307 aa  122  9e-27  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_2848  ABC transporter permease protein  30.91 
 
 
276 aa  122  9.999999999999999e-27  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007355  Mbar_A0643  oligopeptide ABC transporter, permease protein  31.58 
 
 
292 aa  122  9.999999999999999e-27  Methanosarcina barkeri str. Fusaro  Archaea  normal  normal 
 
 
-
 
NC_007355  Mbar_A1282  oligopeptide ABC transporter, permease protein  29.01 
 
 
300 aa  121  9.999999999999999e-27  Methanosarcina barkeri str. Fusaro  Archaea  normal  0.284613  normal 
 
 
-
 
NC_014151  Cfla_1963  binding-protein-dependent transport systems inner membrane component  30.18 
 
 
313 aa  121  9.999999999999999e-27  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_1223  binding-protein dependent transport system inner membrane protein  30.7 
 
 
296 aa  121  9.999999999999999e-27  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_009455  DehaBAV1_0941  binding-protein-dependent transport systems inner membrane component  31.15 
 
 
301 aa  121  9.999999999999999e-27  Dehalococcoides sp. BAV1  Bacteria  normal  n/a   
 
 
-
 
NC_004311  BRA1093  peptide ABC transporter, permease protein, putative  31.58 
 
 
296 aa  121  1.9999999999999998e-26  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B5078  oligopeptide ABC transporter, permease protein  29.1 
 
 
306 aa  121  1.9999999999999998e-26  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_005945  BAS0220  oligopeptide ABC transporter permease  30 
 
 
307 aa  120  1.9999999999999998e-26  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_0207  oligopeptide ABC transporter, permease  30.38 
 
 
307 aa  121  1.9999999999999998e-26  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK0211  oligopeptide ABC transporter, permease  29.29 
 
 
307 aa  120  1.9999999999999998e-26  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A0247  oligopeptide ABC transporter, permease protein  29.1 
 
 
306 aa  121  1.9999999999999998e-26  Bacillus cereus B4264  Bacteria  normal  0.0546254  n/a   
 
 
-
 
NC_007530  GBAA_0233  oligopeptide ABC transporter permease protein  30 
 
 
307 aa  120  1.9999999999999998e-26  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011981  Avi_7518  ABC transporter membrane spanning protein (dipeptide)  30.41 
 
 
295 aa  120  1.9999999999999998e-26  Agrobacterium vitis S4  Bacteria  normal  0.0791708  n/a   
 
 
-
 
NC_008942  Mlab_0718  hypothetical protein  30.89 
 
 
282 aa  120  1.9999999999999998e-26  Methanocorpusculum labreanum Z  Archaea  normal  normal  0.661918 
 
 
-
 
NC_011773  BCAH820_0243  oligopeptide ABC transporter, permease protein  29.29 
 
 
307 aa  120  1.9999999999999998e-26  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_012793  GWCH70_0481  binding-protein-dependent transport systems inner membrane component  28.43 
 
 
299 aa  120  3e-26  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.00209608  n/a   
 
 
-
 
NC_012912  Dd1591_3973  binding-protein-dependent transport systems inner membrane component  30.45 
 
 
300 aa  120  3e-26  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_4025  binding-protein-dependent transport systems inner membrane component  30.26 
 
 
296 aa  120  3e-26  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.946675 
 
 
-
 
NC_004311  BRA0802  nickel transporter permease NikC  30.92 
 
 
290 aa  120  3.9999999999999996e-26  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_4129  binding-protein-dependent transport systems inner membrane component  33.19 
 
 
312 aa  119  3.9999999999999996e-26  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_1196  binding-protein-dependent transport systems inner membrane component  31.06 
 
 
296 aa  120  3.9999999999999996e-26  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_2849  binding-protein-dependent transport systems inner membrane component  30.58 
 
 
304 aa  120  3.9999999999999996e-26  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_011658  BCAH187_A0268  oligopeptide ABC transporter, permease protein  30.38 
 
 
307 aa  120  3.9999999999999996e-26  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_2439  binding-protein-dependent transport systems inner membrane component  30.86 
 
 
272 aa  120  3.9999999999999996e-26  Sinorhizobium medicae WSM419  Bacteria  normal  0.874851  normal 
 
 
-
 
NC_012918  GM21_1592  binding-protein-dependent transport systems inner membrane component  29.92 
 
 
280 aa  119  4.9999999999999996e-26  Geobacter sp. M21  Bacteria  n/a    normal  0.961775 
 
 
-
 
NC_009483  Gura_2052  binding-protein-dependent transport systems inner membrane component  32.06 
 
 
280 aa  119  6e-26  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_3343  binding-protein-dependent transport systems inner membrane component  36.7 
 
 
290 aa  119  6e-26  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.0496107 
 
 
-
 
NC_002939  GSU1435  peptide ABC transporter, permease protein  29.29 
 
 
282 aa  119  7e-26  Geobacter sulfurreducens PCA  Bacteria  normal  0.557175  n/a   
 
 
-
 
NC_013205  Aaci_0114  binding-protein-dependent transport systems inner membrane component  31.71 
 
 
296 aa  119  7e-26  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_1236  binding-protein dependent transport system inner membrane protein  30.67 
 
 
284 aa  119  7e-26  Geobacter metallireducens GS-15  Bacteria  normal  0.143707  normal  0.209567 
 
 
-
 
NC_012880  Dd703_0951  binding-protein-dependent transport systems inner membrane component  29.82 
 
 
275 aa  119  7e-26  Dickeya dadantii Ech703  Bacteria  normal  0.24114  n/a   
 
 
-
 
NC_011369  Rleg2_4199  binding-protein-dependent transport systems inner membrane component  31.85 
 
 
286 aa  119  7.999999999999999e-26  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_009007  RSP_3890  ABC di/oligopeptide transporter, inner membrane subunit  30.47 
 
 
301 aa  119  7.999999999999999e-26  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009040  Rsph17029_4149  binding-protein-dependent transport systems inner membrane component  30.47 
 
 
301 aa  119  7.999999999999999e-26  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal  0.656131 
 
 
-
 
NC_008254  Meso_1504  binding-protein-dependent transport systems inner membrane component  31.23 
 
 
289 aa  119  7.999999999999999e-26  Chelativorans sp. BNC1  Bacteria  normal  0.109416  n/a   
 
 
-
 
NC_008709  Ping_2420  dipeptide ABC transport system inner membrane binding component DppC  27.82 
 
 
288 aa  119  7.999999999999999e-26  Psychromonas ingrahamii 37  Bacteria  normal  hitchhiker  0.0000767733 
 
 
-
 
NC_009664  Krad_3861  binding-protein-dependent transport systems inner membrane component  33.04 
 
 
359 aa  119  7.999999999999999e-26  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.61209  hitchhiker  0.00385009 
 
 
-
 
NC_013216  Dtox_0349  nickel ABC transporter, permease subunit NikC  30.8 
 
 
283 aa  118  9e-26  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_012848  Rleg_5171  binding-protein-dependent transport systems inner membrane component  30.09 
 
 
311 aa  118  9e-26  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.23044 
 
 
-
 
NC_008609  Ppro_2013  binding-protein-dependent transport systems inner membrane component  31.91 
 
 
285 aa  119  9e-26  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_009504  BOV_A0752  nickel transporter permease NikC  30.92 
 
 
290 aa  118  9.999999999999999e-26  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_1354  binding-protein-dependent transport systems inner membrane component  29.14 
 
 
299 aa  118  9.999999999999999e-26  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
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