| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3435 |
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| Symbol | |
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| ID | 4075609 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | - |
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| Start bp | 459985 |
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| End bp | 460800 |
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| Gene Length | 816 bp |
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| Protein Length | 271 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 638004944 |
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| Product | binding-protein-dependent transport systems inner membrane component |
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| Protein accession | YP_611669 |
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| Protein GI | 99078411 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.58374 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.490957 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCGAA GCCTGTTTCT TGGCGGTCTC CTTTCTGGGG TCATGCTGCT TCTGGCGATC
GTCTCCTTCG TGTGGACGCC GTTTGACCAT GCGGTGATGA ACATCCCCGA GAAGTTGCAG
ACTCCAAATG CCACACATCT TCTGGGCACC GATCATTTTG GCCGTGACAT CCTGTCGATG
GTCATGGTCG GCGCGCGCAC CTCTCTGGCG GTGGCGCTTC TGGCGGTGGG GATCGGCATC
GGCCTTGGCG TGCCTTTGGG GCTTGCAGCG GCGGCCACGC GCGGCTCCTG GCTTGATGAG
ATCATCATGC GCGGCAATGA TCTGGTCTTT GCCTTTCCCT CGCTGGTGAT TGCGATCCTG
ATCACGGCCG TCTTTGGCCC GAGCGCCGTC AATGCCATCA TCGCCATCGG CATTTTCAAT
ATTCCGGTCT TTGCCCGTGT GGCGCGCGGC GGCAGTCTCA GCCTCTGGGC GCGGGAATTC
ATCATGGCGG CCCGGGTTGC CGGGAAATCG CGCGCGCGTA TCTCGGCCGA ACATATCCTG
CCCAATATCG CCAACCTCCT GATCGTGCAG GGCACAATCC AGTTCTCGCT TGGGATCTTG
GCCGAGGCGG GGCTGTCCTA TGTGGGGCTT GGTGCGCAGC CCCCCACCCC GAGCTGGGGT
CGGATGCTTG CTGAGGCGCA AACCCTCGTG AGCCTCGCGC CGCATCTGGC CATTGTGCCG
GGCTGCGCCA TCATCGTGAC CGTCGTGGGC CTGAACCTGC TGGGGGATGG GTTGCGCGAC
CGCTTTGATC CCCGCCTGAT GGAGGGGCGC GCATGA
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| Protein sequence | MNRSLFLGGL LSGVMLLLAI VSFVWTPFDH AVMNIPEKLQ TPNATHLLGT DHFGRDILSM
VMVGARTSLA VALLAVGIGI GLGVPLGLAA AATRGSWLDE IIMRGNDLVF AFPSLVIAIL
ITAVFGPSAV NAIIAIGIFN IPVFARVARG GSLSLWAREF IMAARVAGKS RARISAEHIL
PNIANLLIVQ GTIQFSLGIL AEAGLSYVGL GAQPPTPSWG RMLAEAQTLV SLAPHLAIVP
GCAIIVTVVG LNLLGDGLRD RFDPRLMEGR A
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