| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1216 |
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| Symbol | |
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| ID | 7973386 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1329034 |
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| End bp | 1329873 |
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| Gene Length | 840 bp |
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| Protein Length | 279 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644791813 |
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| Product | binding-protein-dependent transport systems inner membrane component |
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| Protein accession | YP_002943133 |
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| Protein GI | 239814223 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAAATGC CACGAATGCT CCGCCAGCTG ATGCACCGCC GCATCGTGAT GGTCTCCGCG
CTGGTGCTGC TGGTCATTGC GGTGCTCGCC ATCGGCGCGC CGCTGTTCGC CTCCATCGAT
CCCAATGACA CCGCCGTGCT GCAGCGCCTG AAGGGCCCGA GCGCCGAGCA CCTGCTGGGC
ACCGACGAGC TCGGCCGCGA CATGTATTCG CGCATCGTCC ACGGCGCGCG CTACTCGCTG
GCCATCGCGG CGCTCACTGC GCTGGGCGCG GTGGTTGCGG GCACGGTGCT GGGCCTCTTG
GCCGGTTTCT TCCGACGGCT CGATACGCCG CTGATGCGCG TGGTCGACGC GATGATGTCC
TTCCCCGACA TCCTGCTGGC GATTGCGCTG GTGGCGATCC TCGGGCCTTC GCTCATCAAC
ACCGTGCTCG CGCTGGTGCT GGTCTACACG CCGCGCGTGG CACGGGTGGT GCGTGCCTCG
ACGCTGGTGG TGCGCGAGTT GCTGTTCGTC GAGGCGGTGC GCGCGCTGGG TGTGCGCACC
TCGCGCATCC TGTGGCGGCA CATATTGCCG AACCTGATGT CGCCGATCCT CGTGCAGGTG
TCGTTCATCT TCGCCTACGC GATCCTGGCC GAGGCGGGGC TCTCGTTCCT GGGCGTGGGC
GTGCCGCCCG AGATTCCGAC CTGGGGCACC ATGGTCGCTG GCAGCCAGCA GTACGCGCAC
CAGGCCTTCT GGGTGGTGCT GTTCCCGGGG CTCGCGATCA TCTTCACCGC GCTCTCGCTG
CAGCTGCTGG GCGACGGCGT GCGCGACCTG CTCGACCCCA AGCTCAAGAA GACCCTGTGA
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| Protein sequence | MQMPRMLRQL MHRRIVMVSA LVLLVIAVLA IGAPLFASID PNDTAVLQRL KGPSAEHLLG
TDELGRDMYS RIVHGARYSL AIAALTALGA VVAGTVLGLL AGFFRRLDTP LMRVVDAMMS
FPDILLAIAL VAILGPSLIN TVLALVLVYT PRVARVVRAS TLVVRELLFV EAVRALGVRT
SRILWRHILP NLMSPILVQV SFIFAYAILA EAGLSFLGVG VPPEIPTWGT MVAGSQQYAH
QAFWVVLFPG LAIIFTALSL QLLGDGVRDL LDPKLKKTL
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