| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ping_2420 |
|---|
| Symbol | dppC |
|---|
| ID | 4625966 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychromonas ingrahamii 37 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008709 |
|---|
| Strand | + |
|---|
| Start bp | 2966786 |
|---|
| End bp | 2967652 |
|---|
| Gene Length | 867 bp |
|---|
| Protein Length | 288 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 639797556 |
|---|
| Product | dipeptide ABC transport system inner membrane binding component DppC |
|---|
| Protein accession | YP_943751 |
|---|
| Protein GI | 119946071 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.0000767733 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAATAGCG TGACTATAGC TCAAGAAAAC TTAATACAAC GCCTGTGGTA TTTAGCACGC
AAAAATCCAC TTTCTTTACT TTCATTAGCA CTCTTTGGTA TGTATGTTTT TGTCGCGTTA
ACCGCTAATT ACTGGGTGCC CTTTGAACCC CTTAAGAGTA ATACGGCTAT TGCTCTAGAA
GCGCCAAATT TAATTCATTT ATTTGGTACT GATCACCTTG GCAGAGATGT ATTTTCGCGA
GTAATGGTCG CAACGCGCCT TGATCTTGGC ATTGCAGTCT ATGCCGTTTC TATCAGTTTT
GTAATAGGTA CCACACTTGG CAGTATTGCT GCCTATTTTG GTGGCTGGTA TGAACGAATT
ATTGGCCGGG TAGCTGATAT TGTACTGGCG TTTCCACTTT TCGTTCTGGC AATGGGGATA
GTGGCGGTGA TGGGGAATTC ACTGATAAAC GTCATTTATG CGACAGCTAT TATTAATATT
CCATTTTATA TCCGTATCGC CCGGGCTGAA GTCAGTATCC AACGTGATCG GCAATATGTT
CAGGCCGCAT TGTTGTCGGG TAATAGCCAT ATGCGTACGT TACTTTATCA TATTTTCCCT
AACTGTTTAC CAAATCTAGT GGTACAGATA TCGACCAATA TGGGCTGGGC AATTCTAAAT
GCGGCGGGTT TGTCATTTAT TGGTTTAGGT GTACGCCCTC CTGCAGCAGA GTGGGGGATT
TTAGTCGCAG AGGGAGCCGA TTACATTATT TCAGGTCAAT GGTGGTTGGT ACTTTTCCCC
GGCTTGATTC TTATGTTAGC AGTGTTTAGT TTTAACCTGC TTGGTGACAC TTTACGTGAT
CTGGTTGACC CGCAGAAAAG GAGCTAA
|
|---|
| Protein sequence | MNSVTIAQEN LIQRLWYLAR KNPLSLLSLA LFGMYVFVAL TANYWVPFEP LKSNTAIALE
APNLIHLFGT DHLGRDVFSR VMVATRLDLG IAVYAVSISF VIGTTLGSIA AYFGGWYERI
IGRVADIVLA FPLFVLAMGI VAVMGNSLIN VIYATAIINI PFYIRIARAE VSIQRDRQYV
QAALLSGNSH MRTLLYHIFP NCLPNLVVQI STNMGWAILN AAGLSFIGLG VRPPAAEWGI
LVAEGADYII SGQWWLVLFP GLILMLAVFS FNLLGDTLRD LVDPQKRS
|
|---|
| |