| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7518 |
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| Symbol | dppC |
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| ID | 7380062 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011981 |
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| Strand | + |
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| Start bp | 465891 |
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| End bp | 466778 |
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| Gene Length | 888 bp |
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| Protein Length | 295 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 643641544 |
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| Product | ABC transporter membrane spanning protein (dipeptide) |
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| Protein accession | YP_002539841 |
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| Protein GI | 222102802 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0791708 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGACGAAAA CAAGCGCAAC CGTAAATGAG CCTATCCAAC GCAGCGCTGG CAGAATGCTG
GCGGGCCGTC TTTTCGCACG TGGTTTAATC GTTCAGGCCT GCTTTGCGAT CCTTGTCCTG
TTTGGGCTTT TGGCCCTGTT CGCCGATCTT GTCGCGCCTT ATGACCCGAA CGCGCAGGAT
CTCGTGGCAG CCCTGCACAC GCCGTCTGCG GCCCATTGGC TTGGGCAAGA CAGCCTCGGC
CGTGATGTGG TGAGCCGCAT CATCTATGGC GGACGTATTT CCATGGCCGT CAGTGTCATG
GCAGGCATTC TGGCCGCCAT TGTGGGCATT GGTTTTGGCC TGTACGCGGG CTATGTGGGT
GGCAAACCCA GCCGTTTTAT CATGGGCTGT ACCGATGTCC TGCTCAGTGT GCCCAATCTG
GTTTTTTCCC TCATTCTTGT GGCCATTCTG GGCAGTGGGG TTTTGAGCGT TGTGCTTGCC
ATTGGCATCG GATTCATTCC CACCTACATC CGCATGGTCA ATGGGTTGGT CTTATCGTTG
CGCGAGCATG ACTATATTCT GGCCGCCCGT CTGATTGGTC AAAAGCCGCA TTCCATTCTT
TTGAGGCATC TGTTGCCCAA TAGTTTTCCA ACCTTGATTG TGCTGTTCAC CATCAATCTG
GGCAATGGCG TGCTGACGGA ATCGACCCTC AGCTACCTTG GTGTTGGCAT AGGTCCACCA
ACGGCATCGT GGGGCAGCAT GGTGTCGGAT GTTTATCCCT ACCTCATGAG CGCGCCGTGG
CTGGTGGTCA GCCCTGCACT TTGCATCATC TTGGTAATCA TTGCATTCAA TGTGGTGGGT
GACAGCCTGC GCGATGCGCT TGATCCTCGC TTAAAGGGGA AATTGTGA
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| Protein sequence | MTKTSATVNE PIQRSAGRML AGRLFARGLI VQACFAILVL FGLLALFADL VAPYDPNAQD
LVAALHTPSA AHWLGQDSLG RDVVSRIIYG GRISMAVSVM AGILAAIVGI GFGLYAGYVG
GKPSRFIMGC TDVLLSVPNL VFSLILVAIL GSGVLSVVLA IGIGFIPTYI RMVNGLVLSL
REHDYILAAR LIGQKPHSIL LRHLLPNSFP TLIVLFTINL GNGVLTESTL SYLGVGIGPP
TASWGSMVSD VYPYLMSAPW LVVSPALCII LVIIAFNVVG DSLRDALDPR LKGKL
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