Gene PC1_4111 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_4111 
Symbol 
ID8135109 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand
Start bp4645583 
End bp4646482 
Gene Length900 bp 
Protein Length299 aa 
Translation table11 
GC content61% 
IMG OID644867429 
Productbinding-protein-dependent transport systems inner membrane component 
Protein accessionYP_003019662 
Protein GI253690472 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.553979 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACCTGC CTTCCGAACC CGTCGTGGCC GCAGCCACGC TTGATGAAGA GACGATACGT 
TCGCCGTGGC GCGATTTCGT TCAGGTCTTT ATCCGTAACC CGATGGCGCT GGTGTCCAGC
GGCTTTGTCC TGCTGCTGGT ACTGGTTGCG ATTTTCGCGC CCTGGCTGGC ACCGTGGAAC
CCGATGGAGC CTGACTGGAC GGCGCTGGCT TCACCGCCTT CAGCAGCGCA CTGGATGGGC
ACCGACGATC TCGGACGCGA TGTGATGAGC CGCATCATCT ACGGCGCACG CATCTCGTTA
TACATCGGTA TCTTTTCCGT CACGCTCGGC ATGCTGGTCG GCATCGTACT CGGCCTGCTG
GCAGGCTATT ACGGCCGCTG GGTGGATACG CTGATCATGC GCGGTTCCGA CGTGCTGTTC
GCCTTCCCCG GCATGCTGCT GGCGATTGCG GTCGTCGCCA TCCTCGGCCC CGGCCTGAAT
AACGTCATTA TCGCTGTCGC CGTCTTCAGC GTACCGGTCT TCGCGCGAAT CGTGCGAGCC
TCTACGCTGT CGCTGAAACA GGCAGCCTAT GTAGAAGCAG TACGCTGCGC TGGTGCACCG
GATCGCATCA TACTGATGCG CCACATCCTG CCCGGCACGC TGCCTAACGT GATCGTCTAT
TTCACCATGC GTATCGGCAC CAGCATCCTG ACGGCGGCAG GGCTGAGCTT CATCGGCCTT
GGCCCAGAAC CGGACGTACC GGAATGGGGC AATATTCTGG CGATGAGCCG CAGCCTGATG
ATGGCTGGTG CCTGGCACGT CAGCGTGTTC CCCGGTCTGG CGATTTTCTT TACCGTGCTG
GCGTTTAACC TGCTCGGGGA TGCGCTGCGT GATACGCTCG ATCCCAAACT GAAAAGCTGA
 
Protein sequence
MNLPSEPVVA AATLDEETIR SPWRDFVQVF IRNPMALVSS GFVLLLVLVA IFAPWLAPWN 
PMEPDWTALA SPPSAAHWMG TDDLGRDVMS RIIYGARISL YIGIFSVTLG MLVGIVLGLL
AGYYGRWVDT LIMRGSDVLF AFPGMLLAIA VVAILGPGLN NVIIAVAVFS VPVFARIVRA
STLSLKQAAY VEAVRCAGAP DRIILMRHIL PGTLPNVIVY FTMRIGTSIL TAAGLSFIGL
GPEPDVPEWG NILAMSRSLM MAGAWHVSVF PGLAIFFTVL AFNLLGDALR DTLDPKLKS