More than 300 homologs were found in PanDaTox collection
for query gene Avi_6135 on replicon NC_011988
Organism: Agrobacterium vitis S4



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011369  Rleg2_3782  binding-protein-dependent transport systems inner membrane component  75.5 
 
 
526 aa  730    Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.865045 
 
 
-
 
NC_011988  Avi_6135  ABC transporter membrane spanning protein  100 
 
 
513 aa  997    Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_4111  binding-protein-dependent transport systems inner membrane component  74.32 
 
 
526 aa  716    Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.43356  normal 
 
 
-
 
NC_012912  Dd1591_2520  binding-protein-dependent transport systems inner membrane component  62.06 
 
 
530 aa  565  1e-160  Dickeya zeae Ech1591  Bacteria  normal  0.034918  n/a   
 
 
-
 
NC_009708  YpsIP31758_1349  iron(III) ABC transporter, permease protein  62.26 
 
 
528 aa  543  1e-153  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A2711  iron(III)-transport system permease  62.06 
 
 
528 aa  540  9.999999999999999e-153  Yersinia pestis Angola  Bacteria  normal  0.0924971  normal  0.0430816 
 
 
-
 
NC_010465  YPK_1462  binding-protein-dependent transport systems inner membrane component  61.91 
 
 
528 aa  540  9.999999999999999e-153  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_2838  binding-protein dependent transport system inner membrane protein  62.2 
 
 
531 aa  529  1e-149  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009832  Spro_2535  binding-protein-dependent transport systems inner membrane component  62.5 
 
 
527 aa  519  1e-146  Serratia proteamaculans 568  Bacteria  normal  0.604854  normal 
 
 
-
 
NC_008541  Arth_0606  binding-protein-dependent transport systems inner membrane component  54.17 
 
 
536 aa  515  1.0000000000000001e-145  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_2429  binding-protein-dependent transport systems inner membrane component  61.13 
 
 
527 aa  511  1e-143  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_1358  binding-protein-dependent transport systems inner membrane component  60.16 
 
 
525 aa  510  1e-143  Pectobacterium wasabiae WPP163  Bacteria  normal  0.41308  n/a   
 
 
-
 
NC_012917  PC1_2920  binding-protein-dependent transport systems inner membrane component  60.78 
 
 
525 aa  504  1e-141  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.905105  n/a   
 
 
-
 
NC_008705  Mkms_2027  binding-protein-dependent transport systems inner membrane component  52.94 
 
 
526 aa  466  9.999999999999999e-131  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_1981  binding-protein-dependent transport systems inner membrane component  52.94 
 
 
526 aa  466  9.999999999999999e-131  Mycobacterium sp. MCS  Bacteria  normal  0.0924311  n/a   
 
 
-
 
NC_009077  Mjls_1961  binding-protein-dependent transport systems inner membrane component  52.74 
 
 
526 aa  463  1e-129  Mycobacterium sp. JLS  Bacteria  normal  0.80009  normal 
 
 
-
 
NC_011886  Achl_0735  binding-protein-dependent transport systems inner membrane component  54.37 
 
 
530 aa  458  1e-127  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_009338  Mflv_2857  binding-protein-dependent transport systems inner membrane component  50.72 
 
 
536 aa  418  9.999999999999999e-116  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.145655  normal 
 
 
-
 
NC_007777  Francci3_1591  binding-protein-dependent transport systems inner membrane component  49.9 
 
 
518 aa  407  1.0000000000000001e-112  Frankia sp. CcI3  Bacteria  normal  0.543872  normal  0.457937 
 
 
-
 
NC_008703  Mkms_5749  binding-protein-dependent transport systems inner membrane component  50.82 
 
 
533 aa  400  9.999999999999999e-111  Mycobacterium sp. KMS  Bacteria  normal  normal  0.97601 
 
 
-
 
NC_009921  Franean1_5339  binding-protein-dependent transport systems inner membrane component  48.98 
 
 
509 aa  373  1e-102  Frankia sp. EAN1pec  Bacteria  normal  0.992663  normal  0.953855 
 
 
-
 
NC_008699  Noca_2021  binding-protein-dependent transport systems inner membrane component  47.14 
 
 
522 aa  369  1e-101  Nocardioides sp. JS614  Bacteria  normal  0.0398286  n/a   
 
 
-
 
NC_013757  Gobs_3649  binding-protein-dependent transport systems inner membrane component  47.39 
 
 
500 aa  351  2e-95  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.974086  n/a   
 
 
-
 
NC_010676  Bphyt_4827  binding-protein-dependent transport systems inner membrane component  39.87 
 
 
534 aa  282  8.000000000000001e-75  Burkholderia phytofirmans PsJN  Bacteria  normal  0.232577  normal  0.0312056 
 
 
-
 
NC_007952  Bxe_B1836  ABC Fe+3 transporter, inner membrane subunit  39.87 
 
 
534 aa  281  2e-74  Burkholderia xenovorans LB400  Bacteria  normal  0.374127  normal  0.533271 
 
 
-
 
NC_010322  PputGB1_4938  binding-protein-dependent transport systems inner membrane component  38.08 
 
 
521 aa  273  7e-72  Pseudomonas putida GB-1  Bacteria  normal  hitchhiker  0.000107301 
 
 
-
 
NC_002947  PP_4882  binding-protein-dependent transport systems inner membrane component  39.17 
 
 
521 aa  272  1e-71  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_4762  binding-protein-dependent transport systems inner membrane component  38.08 
 
 
521 aa  270  2.9999999999999997e-71  Pseudomonas putida F1  Bacteria  normal  0.109676  normal  0.504386 
 
 
-
 
NC_013131  Caci_7420  binding-protein-dependent transport systems inner membrane component  39.87 
 
 
503 aa  268  2e-70  Catenulispora acidiphila DSM 44928  Bacteria  decreased coverage  0.0090372  normal 
 
 
-
 
NC_007510  Bcep18194_A3949  ABC Fe3+ transporter, inner membrane subunit  41.08 
 
 
532 aa  267  2.9999999999999995e-70  Burkholderia sp. 383  Bacteria  normal  0.305187  normal  0.0483056 
 
 
-
 
NC_010501  PputW619_4672  binding-protein-dependent transport systems inner membrane component  38.28 
 
 
521 aa  265  1e-69  Pseudomonas putida W619  Bacteria  normal  normal  0.548778 
 
 
-
 
NC_008463  PA14_62010  putative iron ABC transporter, permease protein  38.92 
 
 
512 aa  260  4e-68  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.0428593 
 
 
-
 
NC_007492  Pfl01_0530  binding-protein dependent transport system inner membrane protein  39.24 
 
 
521 aa  254  3e-66  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.162719 
 
 
-
 
NC_012803  Mlut_06270  ABC-type Fe3+ transport system, permease component  39.26 
 
 
515 aa  241  2e-62  Micrococcus luteus NCTC 2665  Bacteria  normal  0.0952696  n/a   
 
 
-
 
NC_009972  Haur_1721  binding-protein-dependent transport systems inner membrane component  33.98 
 
 
530 aa  231  2e-59  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.353247  n/a   
 
 
-
 
NC_009953  Sare_1430  binding-protein-dependent transport systems inner membrane component  39.96 
 
 
511 aa  231  3e-59  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.000545483 
 
 
-
 
NC_009338  Mflv_3362  binding-protein-dependent transport systems inner membrane component  36.9 
 
 
511 aa  224  3e-57  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.269197  normal  0.697364 
 
 
-
 
NC_013946  Mrub_2271  binding-protein-dependent transport systems inner membrane component  37.6 
 
 
523 aa  222  9.999999999999999e-57  Meiothermus ruber DSM 1279  Bacteria  normal  hitchhiker  0.0000425777 
 
 
-
 
NC_013235  Namu_1665  binding-protein-dependent transport systems inner membrane component  35.33 
 
 
515 aa  221  3e-56  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.000100634  normal  0.0519495 
 
 
-
 
NC_013595  Sros_8129  iron ABC transporter, permease protein  36.14 
 
 
502 aa  221  3.9999999999999997e-56  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.161316 
 
 
-
 
NC_008726  Mvan_3092  binding-protein-dependent transport systems inner membrane component  36.76 
 
 
514 aa  219  7.999999999999999e-56  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.923953  normal  0.633646 
 
 
-
 
NC_011831  Cagg_2417  binding-protein-dependent transport systems inner membrane component  33.46 
 
 
536 aa  213  4.9999999999999996e-54  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.0253396  normal  0.609444 
 
 
-
 
NC_008148  Rxyl_1174  binding-protein-dependent transport systems inner membrane component  35.84 
 
 
528 aa  213  7.999999999999999e-54  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_2723  binding-protein-dependent transport systems inner membrane component  37.42 
 
 
530 aa  203  5e-51  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.5168 
 
 
-
 
NC_010718  Nther_2889  binding-protein-dependent transport systems inner membrane component  29.59 
 
 
543 aa  182  2e-44  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_013202  Hmuk_2276  binding-protein-dependent transport systems inner membrane component  30.55 
 
 
541 aa  176  8e-43  Halomicrobium mukohataei DSM 12286  Archaea  normal  normal 
 
 
-
 
NC_009767  Rcas_3172  binding-protein-dependent transport systems inner membrane component  32.2 
 
 
540 aa  170  7e-41  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_6602  binding-protein-dependent transport systems inner membrane component  32.63 
 
 
530 aa  167  2.9999999999999998e-40  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.442605 
 
 
-
 
NC_014158  Tpau_2071  binding-protein-dependent transport systems inner membrane component  33.13 
 
 
506 aa  163  9e-39  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_013922  Nmag_1924  binding-protein-dependent transport systems inner membrane component  28.51 
 
 
540 aa  153  5.9999999999999996e-36  Natrialba magadii ATCC 43099  Archaea  normal  n/a   
 
 
-
 
NC_008261  CPF_0441  putative iron ABC transporter, permease protein  23.77 
 
 
533 aa  144  6e-33  Clostridium perfringens ATCC 13124  Bacteria  normal  0.388151  n/a   
 
 
-
 
NC_009523  RoseRS_2293  binding-protein-dependent transport systems inner membrane component  28.83 
 
 
557 aa  141  3e-32  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_012029  Hlac_0167  binding-protein-dependent transport systems inner membrane component  30.19 
 
 
536 aa  139  1e-31  Halorubrum lacusprofundi ATCC 49239  Archaea  normal  0.556719  normal 
 
 
-
 
NC_013173  Dbac_0741  binding-protein-dependent transport systems inner membrane component  27.71 
 
 
550 aa  136  9e-31  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_013158  Huta_1875  binding-protein-dependent transport systems inner membrane component  30.44 
 
 
545 aa  132  2.0000000000000002e-29  Halorhabdus utahensis DSM 12940  Archaea  normal  n/a   
 
 
-
 
NC_013922  Nmag_1463  ABC transporter related protein  32.24 
 
 
1057 aa  130  5.0000000000000004e-29  Natrialba magadii ATCC 43099  Archaea  normal  n/a   
 
 
-
 
NC_008599  CFF8240_0116  iron ABC transporter, permease protein  23.64 
 
 
518 aa  127  7e-28  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_0894  ABC-type transport system, permease component  28.57 
 
 
553 aa  126  1e-27  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.0000205423  n/a   
 
 
-
 
NC_007614  Nmul_A0731  binding-protein dependent transport system inner membrane protein  26.4 
 
 
567 aa  125  1e-27  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.0677887  n/a   
 
 
-
 
NC_009253  Dred_1530  binding-protein-dependent transport systems inner membrane component  24.55 
 
 
550 aa  122  1.9999999999999998e-26  Desulfotomaculum reducens MI-1  Bacteria  normal  0.714891  n/a   
 
 
-
 
NC_012560  Avin_47290  iron ABC transporter, permease protein  28.1 
 
 
538 aa  120  4.9999999999999996e-26  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_00163  putative ABC-type transport system, permease component  31.35 
 
 
507 aa  120  9e-26  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.452019  n/a   
 
 
-
 
NC_008044  TM1040_0122  binding-protein-dependent transport systems inner membrane component  25.69 
 
 
559 aa  118  1.9999999999999998e-25  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_3626  binding-protein-dependent transport systems inner membrane component  25.78 
 
 
562 aa  116  7.999999999999999e-25  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_009654  Mmwyl1_3753  binding-protein-dependent transport systems inner membrane component  24.82 
 
 
554 aa  115  3e-24  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.104442 
 
 
-
 
NC_008789  Hhal_1189  binding-protein-dependent transport systems inner membrane component  26.63 
 
 
549 aa  112  1.0000000000000001e-23  Halorhodospira halophila SL1  Bacteria  normal  0.217598  n/a   
 
 
-
 
NC_008340  Mlg_2575  binding-protein-dependent transport systems inner membrane component  26.54 
 
 
568 aa  110  5e-23  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal  0.0287363 
 
 
-
 
NC_011726  PCC8801_2669  binding-protein-dependent transport systems inner membrane component  25.19 
 
 
560 aa  109  9.000000000000001e-23  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_3435  binding-protein-dependent transport systems inner membrane component  25.19 
 
 
560 aa  109  9.000000000000001e-23  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_012039  Cla_1525  ABC transporter, permease protein  24.52 
 
 
526 aa  109  1e-22  Campylobacter lari RM2100  Bacteria  normal  n/a   
 
 
-
 
NC_007969  Pcryo_1727  binding-protein-dependent transport systems inner membrane component  24.77 
 
 
561 aa  109  1e-22  Psychrobacter cryohalolentis K5  Bacteria  normal  normal  0.368895 
 
 
-
 
NC_007204  Psyc_1546  ABC iron transporter, inner membrane subunit  25.36 
 
 
564 aa  108  2e-22  Psychrobacter arcticus 273-4  Bacteria  normal  0.424688  normal  0.358419 
 
 
-
 
NC_009439  Pmen_0330  binding-protein-dependent transport systems inner membrane component  25.75 
 
 
538 aa  108  3e-22  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_009428  Rsph17025_1481  binding-protein-dependent transport systems inner membrane component  26.63 
 
 
557 aa  106  9e-22  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.673481  normal 
 
 
-
 
NC_003912  CJE0167  iron ABC transporter, permease protein  21.89 
 
 
538 aa  105  1e-21  Campylobacter jejuni RM1221  Bacteria  normal  0.471521  n/a   
 
 
-
 
NC_009049  Rsph17029_1797  binding-protein-dependent transport systems inner membrane component  28.39 
 
 
557 aa  105  1e-21  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal  0.406299 
 
 
-
 
NC_007492  Pfl01_5429  binding-protein dependent transport system inner membrane protein  25.87 
 
 
555 aa  105  1e-21  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.0325707 
 
 
-
 
NC_009719  Plav_0177  binding-protein-dependent transport systems inner membrane component  27.42 
 
 
553 aa  106  1e-21  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.445803 
 
 
-
 
NC_008787  CJJ81176_0210  iron ABC transporter, permease protein  21.68 
 
 
538 aa  105  2e-21  Campylobacter jejuni subsp. jejuni 81-176  Bacteria  normal  0.912172  n/a   
 
 
-
 
NC_009707  JJD26997_0188  iron ABC transporter, permease protein  21.31 
 
 
538 aa  104  4e-21  Campylobacter jejuni subsp. doylei 269.97  Bacteria  normal  n/a   
 
 
-
 
NC_009524  PsycPRwf_0870  binding-protein-dependent transport systems inner membrane component  25.66 
 
 
533 aa  104  5e-21  Psychrobacter sp. PRwf-1  Bacteria  normal  0.0400876  hitchhiker  0.00000113394 
 
 
-
 
NC_007493  RSP_0163  putative iron(III) ABC transporter, fused inner membrane subunits  28.01 
 
 
557 aa  103  6e-21  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_1588  binding-protein-dependent transport systems inner membrane component  20.83 
 
 
563 aa  103  8e-21  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_009783  VIBHAR_03434  hypothetical protein  23.9 
 
 
541 aa  103  8e-21  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013456  VEA_002575  ferric iron ABC transporter permease protein  23.05 
 
 
541 aa  103  9e-21  Vibrio sp. Ex25  Bacteria  normal  0.500484  n/a   
 
 
-
 
NC_011901  Tgr7_0454  binding-protein-dependent transport systems inner membrane component  25.39 
 
 
562 aa  102  1e-20  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.587106  n/a   
 
 
-
 
NC_002947  PP_5195  binding-protein-dependent transport systems inner membrane component  26.07 
 
 
540 aa  101  4e-20  Pseudomonas putida KT2440  Bacteria  normal  0.154251  normal 
 
 
-
 
NC_010322  PputGB1_5255  binding-protein-dependent transport systems inner membrane component  26.55 
 
 
540 aa  100  6e-20  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_008687  Pden_4446  binding-protein-dependent transport systems inner membrane component  24.9 
 
 
550 aa  99.4  1e-19  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_0997  binding-protein-dependent transport systems inner membrane component  23.36 
 
 
543 aa  98.6  2e-19  Shewanella woodyi ATCC 51908  Bacteria  normal  hitchhiker  0.000511547 
 
 
-
 
NC_008309  HS_0782  iron-uptake permease inner membrane protein  22.2 
 
 
555 aa  98.6  2e-19  Haemophilus somnus 129PT  Bacteria  normal  0.297135  n/a   
 
 
-
 
NC_009512  Pput_5102  binding-protein-dependent transport systems inner membrane component  26.07 
 
 
540 aa  98.2  3e-19  Pseudomonas putida F1  Bacteria  normal  0.497984  normal 
 
 
-
 
NC_010501  PputW619_5020  binding-protein-dependent transport systems inner membrane component  26.36 
 
 
556 aa  97.8  4e-19  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_0315  iron ABC transporter, permease protein  27.1 
 
 
538 aa  97.4  5e-19  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_008698  Tpen_1555  binding-protein-dependent transport systems inner membrane component  25.93 
 
 
561 aa  97.4  5e-19  Thermofilum pendens Hrk 5  Archaea  normal  0.488219  n/a   
 
 
-
 
NC_007963  Csal_0551  binding-protein-dependent transport systems inner membrane component  24.7 
 
 
567 aa  96.7  9e-19  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_013515  Smon_0975  binding-protein-dependent transport systems inner membrane component  20.91 
 
 
525 aa  95.1  2e-18  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_008228  Patl_1597  binding-protein-dependent transport systems inner membrane component  24.41 
 
 
528 aa  94.7  3e-18  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_1840  binding-protein-dependent transport systems inner membrane component  25.25 
 
 
561 aa  93.6  8e-18  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_1198  binding-protein dependent transport system inner membrane protein  27.8 
 
 
545 aa  93.2  1e-17  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
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