More than 300 homologs were found in PanDaTox collection
for query gene Francci3_0351 on replicon NC_007777
Organism: Frankia sp. CcI3



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007777  Francci3_0351  short-chain dehydrogenase/reductase SDR  100 
 
 
291 aa  574  1.0000000000000001e-163  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_6469  short-chain dehydrogenase/reductase SDR  76.34 
 
 
263 aa  365  1e-100  Frankia sp. EAN1pec  Bacteria  normal  normal  0.0477636 
 
 
-
 
NC_003295  RSc2321  dehydrogenase/reductase oxidoreductase protein  48.25 
 
 
275 aa  227  2e-58  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.195083 
 
 
-
 
NC_013161  Cyan8802_0137  short-chain dehydrogenase/reductase SDR  44.23 
 
 
261 aa  218  7.999999999999999e-56  Cyanothece sp. PCC 8802  Bacteria  normal  hitchhiker  0.00000076045 
 
 
-
 
NC_008392  Bamb_6118  short-chain dehydrogenase/reductase SDR  47.08 
 
 
275 aa  218  7.999999999999999e-56  Burkholderia ambifaria AMMD  Bacteria  normal  0.304156  normal  0.200034 
 
 
-
 
NC_011884  Cyan7425_1889  short-chain dehydrogenase/reductase SDR  45.04 
 
 
264 aa  216  2e-55  Cyanothece sp. PCC 7425  Bacteria  normal  0.0188274  normal 
 
 
-
 
NC_011726  PCC8801_0140  short-chain dehydrogenase/reductase SDR  43.85 
 
 
261 aa  216  4e-55  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_010002  Daci_2044  short-chain dehydrogenase/reductase SDR  48.06 
 
 
260 aa  210  2e-53  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.756544 
 
 
-
 
NC_008312  Tery_1795  short-chain dehydrogenase/reductase SDR  42.64 
 
 
264 aa  210  2e-53  Trichodesmium erythraeum IMS101  Bacteria  normal  0.711928  normal 
 
 
-
 
NC_013235  Namu_0089  short-chain dehydrogenase/reductase SDR  49.03 
 
 
264 aa  206  4e-52  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_1619  short-chain dehydrogenase/reductase SDR  46.97 
 
 
271 aa  204  9e-52  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.61951 
 
 
-
 
NC_013517  Sterm_2330  short-chain dehydrogenase/reductase SDR  40.87 
 
 
257 aa  203  3e-51  Sebaldella termitidis ATCC 33386  Bacteria  hitchhiker  0.000620196  n/a   
 
 
-
 
NC_007413  Ava_1011  Short-chain dehydrogenase/reductase SDR  43.27 
 
 
258 aa  197  2.0000000000000003e-49  Anabaena variabilis ATCC 29413  Bacteria  normal  0.968961  hitchhiker  0.00922057 
 
 
-
 
NC_014148  Plim_1352  short-chain dehydrogenase/reductase SDR  42.54 
 
 
271 aa  196  4.0000000000000005e-49  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.708878  n/a   
 
 
-
 
NC_009338  Mflv_3538  short-chain dehydrogenase/reductase SDR  44.44 
 
 
259 aa  196  5.000000000000001e-49  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.0177311  normal  0.151964 
 
 
-
 
NC_011729  PCC7424_1836  short-chain dehydrogenase/reductase SDR  37.6 
 
 
260 aa  190  2.9999999999999997e-47  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_008146  Mmcs_0188  short-chain dehydrogenase/reductase SDR  43.25 
 
 
262 aa  189  5.999999999999999e-47  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_0197  short-chain dehydrogenase/reductase SDR  43.25 
 
 
262 aa  189  5.999999999999999e-47  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_0177  short-chain dehydrogenase/reductase SDR  42.8 
 
 
262 aa  188  9e-47  Mycobacterium sp. JLS  Bacteria  normal  normal  0.721122 
 
 
-
 
NC_008726  Mvan_3324  short-chain dehydrogenase/reductase SDR  43.92 
 
 
269 aa  188  1e-46  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.377978 
 
 
-
 
NC_013165  Shel_18580  short-chain dehydrogenase of unknown substrate specificity  44.15 
 
 
258 aa  185  7e-46  Slackia heliotrinireducens DSM 20476  Bacteria  normal  0.489964  normal 
 
 
-
 
NC_010571  Oter_2864  short-chain dehydrogenase/reductase SDR  40.47 
 
 
289 aa  184  2.0000000000000003e-45  Opitutus terrae PB90-1  Bacteria  normal  normal  0.327148 
 
 
-
 
NC_009439  Pmen_3938  short-chain dehydrogenase/reductase SDR  40.62 
 
 
262 aa  181  1e-44  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_2231  short-chain dehydrogenase/reductase SDR  41.04 
 
 
263 aa  177  2e-43  Haliangium ochraceum DSM 14365  Bacteria  normal  0.19807  normal 
 
 
-
 
NC_011729  PCC7424_4642  short-chain dehydrogenase/reductase SDR  40.49 
 
 
264 aa  177  2e-43  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  0.0000000179752 
 
 
-
 
NC_014248  Aazo_3911  short-chain dehydrogenase/reductase SDR  37.65 
 
 
267 aa  176  3e-43  'Nostoc azollae' 0708  Bacteria  normal  0.322734  n/a   
 
 
-
 
NC_009656  PSPA7_0799  short chain dehydrogenase/reductase family oxidoreductase  41.43 
 
 
266 aa  174  1.9999999999999998e-42  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_08440  putative short chain alcohol dehydrogenase  41.04 
 
 
266 aa  174  1.9999999999999998e-42  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  hitchhiker  0.0000000229698 
 
 
-
 
NC_009664  Krad_0779  short-chain dehydrogenase/reductase SDR  46.61 
 
 
286 aa  173  3.9999999999999995e-42  Kineococcus radiotolerans SRS30216  Bacteria  hitchhiker  0.00749167  decreased coverage  0.00042824 
 
 
-
 
NC_007413  Ava_1572  Short-chain dehydrogenase/reductase SDR  36.95 
 
 
263 aa  171  1e-41  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.577459 
 
 
-
 
NC_013501  Rmar_1809  short-chain dehydrogenase/reductase SDR  40.08 
 
 
263 aa  170  2e-41  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_013517  Sterm_1096  short-chain dehydrogenase/reductase SDR  38.19 
 
 
256 aa  170  2e-41  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_0906  short-chain dehydrogenase/reductase SDR  39.04 
 
 
273 aa  169  6e-41  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.127379  n/a   
 
 
-
 
NC_013202  Hmuk_1178  short-chain dehydrogenase/reductase SDR  47.79 
 
 
259 aa  165  6.9999999999999995e-40  Halomicrobium mukohataei DSM 12286  Archaea  normal  0.82399  normal 
 
 
-
 
NC_013132  Cpin_4109  short-chain dehydrogenase/reductase SDR  35.91 
 
 
269 aa  163  4.0000000000000004e-39  Chitinophaga pinensis DSM 2588  Bacteria  normal  hitchhiker  0.00421935 
 
 
-
 
NC_009784  VIBHAR_05256  short-chain dehydrogenase/reductase SDR  36.96 
 
 
259 aa  162  5.0000000000000005e-39  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009565  TBFG_11577  ketoacyl reductase  41.29 
 
 
267 aa  159  5e-38  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_2448  short-chain dehydrogenase/reductase SDR  38.04 
 
 
257 aa  158  1e-37  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013203  Apar_0041  short-chain dehydrogenase/reductase SDR  39.68 
 
 
257 aa  157  2e-37  Atopobium parvulum DSM 20469  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_3300  short-chain dehydrogenase/reductase SDR  40 
 
 
272 aa  156  4e-37  Haliangium ochraceum DSM 14365  Bacteria  normal  0.605078  normal  0.514892 
 
 
-
 
NC_009718  Fnod_0523  short-chain dehydrogenase/reductase SDR  35.74 
 
 
255 aa  155  6e-37  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_008639  Cpha266_0226  short-chain dehydrogenase/reductase SDR  34.48 
 
 
259 aa  155  8e-37  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  0.996462  n/a   
 
 
-
 
NC_004578  PSPTO_0601  oxidoreductase, short chain dehydrogenase/reductase family  39.6 
 
 
258 aa  155  9e-37  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_6133  short-chain dehydrogenase/reductase SDR  35 
 
 
263 aa  154  1e-36  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_1611  short-chain dehydrogenase/reductase SDR  36.51 
 
 
262 aa  154  2e-36  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_008255  CHU_3621  short-chain dehydrogenase  33.85 
 
 
258 aa  154  2e-36  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_1833  short-chain dehydrogenase/reductase SDR  42.35 
 
 
252 aa  153  4e-36  Thermomonospora curvata DSM 43183  Bacteria  normal  0.092001  n/a   
 
 
-
 
NC_007492  Pfl01_5106  Short-chain dehydrogenase/reductase SDR  38.76 
 
 
262 aa  151  1e-35  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.311622  normal  0.753041 
 
 
-
 
NC_007005  Psyr_4572  Short-chain dehydrogenase/reductase SDR  40 
 
 
258 aa  150  2e-35  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_6941  short-chain dehydrogenase/reductase SDR  42.86 
 
 
259 aa  150  2e-35  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_3849  short-chain dehydrogenase/reductase SDR  40 
 
 
292 aa  149  7e-35  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.858349  n/a   
 
 
-
 
NC_009675  Anae109_3974  short-chain dehydrogenase/reductase SDR  40.55 
 
 
264 aa  148  1.0000000000000001e-34  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.036497  normal  0.609933 
 
 
-
 
NC_008699  Noca_1466  short-chain dehydrogenase/reductase SDR  40.08 
 
 
253 aa  147  2.0000000000000003e-34  Nocardioides sp. JS614  Bacteria  normal  0.0605466  n/a   
 
 
-
 
NC_008726  Mvan_3113  short-chain dehydrogenase/reductase SDR  37.04 
 
 
262 aa  147  2.0000000000000003e-34  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.999856 
 
 
-
 
NC_013061  Phep_3131  short-chain dehydrogenase/reductase SDR  35.48 
 
 
258 aa  146  3e-34  Pedobacter heparinus DSM 2366  Bacteria  normal  0.859893  normal 
 
 
-
 
NC_011891  A2cp1_3990  short-chain dehydrogenase/reductase SDR  40.55 
 
 
266 aa  146  4.0000000000000006e-34  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_008255  CHU_2063  short-chain dehydrogenase  32.81 
 
 
261 aa  146  5e-34  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.0247773  normal  0.17766 
 
 
-
 
NC_011894  Mnod_4423  short-chain dehydrogenase/reductase SDR  42.25 
 
 
276 aa  145  8.000000000000001e-34  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.235547  n/a   
 
 
-
 
NC_013132  Cpin_3329  short-chain dehydrogenase/reductase SDR  33.2 
 
 
256 aa  144  1e-33  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.227726  hitchhiker  0.00265893 
 
 
-
 
NC_009483  Gura_1536  short-chain dehydrogenase/reductase SDR  34.5 
 
 
260 aa  145  1e-33  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_011060  Ppha_2686  short-chain dehydrogenase/reductase SDR  38.96 
 
 
258 aa  144  2e-33  Pelodictyon phaeoclathratiforme BU-1  Bacteria  hitchhiker  0.00673203  n/a   
 
 
-
 
NC_013131  Caci_8914  short-chain dehydrogenase/reductase SDR  39.76 
 
 
255 aa  144  2e-33  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.505504 
 
 
-
 
NC_010803  Clim_0189  short-chain dehydrogenase/reductase SDR  35.2 
 
 
267 aa  143  3e-33  Chlorobium limicola DSM 245  Bacteria  hitchhiker  0.00000709968  n/a   
 
 
-
 
NC_013510  Tcur_2692  short-chain dehydrogenase/reductase SDR  37.14 
 
 
267 aa  143  3e-33  Thermomonospora curvata DSM 43183  Bacteria  decreased coverage  0.0000430049  n/a   
 
 
-
 
NC_009953  Sare_4948  short-chain dehydrogenase/reductase SDR  40.48 
 
 
253 aa  143  3e-33  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.623441 
 
 
-
 
NC_006369  lpl1378  hypothetical protein  32.79 
 
 
259 aa  143  4e-33  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_011145  AnaeK_3912  short-chain dehydrogenase/reductase SDR  39.16 
 
 
266 aa  143  4e-33  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_4202  short-chain dehydrogenase/reductase SDR  34.77 
 
 
344 aa  142  6e-33  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_006368  lpp1382  hypothetical protein  32.39 
 
 
259 aa  142  6e-33  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_007511  Bcep18194_B1706  Short-chain dehydrogenase/reductase SDR  41.23 
 
 
266 aa  142  9e-33  Burkholderia sp. 383  Bacteria  normal  0.951732  normal 
 
 
-
 
NC_011894  Mnod_1035  short-chain dehydrogenase/reductase SDR  42.36 
 
 
270 aa  141  9.999999999999999e-33  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0312813  n/a   
 
 
-
 
NC_013515  Smon_1006  short-chain dehydrogenase/reductase SDR  34.11 
 
 
257 aa  141  9.999999999999999e-33  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_008261  CPF_2906  short chain dehydrogenase/reductase family oxidoreductase  31.15 
 
 
257 aa  141  9.999999999999999e-33  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_2059  short-chain dehydrogenase/reductase SDR  37.79 
 
 
260 aa  141  1.9999999999999998e-32  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_011059  Paes_0281  short-chain dehydrogenase/reductase SDR  33.47 
 
 
255 aa  140  1.9999999999999998e-32  Prosthecochloris aestuarii DSM 271  Bacteria  hitchhiker  0.000634692  hitchhiker  0.00117931 
 
 
-
 
NC_007514  Cag_0350  short chain dehydrogenase/reductase family oxidoreductase  36.29 
 
 
259 aa  140  1.9999999999999998e-32  Chlorobium chlorochromatii CaD3  Bacteria  hitchhiker  0.000771311  n/a   
 
 
-
 
NC_008262  CPR_2585  short chain dehydrogenase/reductase family oxidoreductase  30.38 
 
 
257 aa  140  1.9999999999999998e-32  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_1512  short-chain dehydrogenase/reductase SDR  37.55 
 
 
264 aa  139  3.9999999999999997e-32  Enterobacter sp. 638  Bacteria  normal  normal  0.360234 
 
 
-
 
NC_011757  Mchl_0153  short-chain dehydrogenase/reductase SDR  39.04 
 
 
262 aa  139  4.999999999999999e-32  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.418257  normal  0.135019 
 
 
-
 
NC_008541  Arth_0289  short-chain dehydrogenase/reductase SDR  37.86 
 
 
258 aa  139  7e-32  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_3794  short-chain dehydrogenase/reductase SDR  32.39 
 
 
262 aa  139  7.999999999999999e-32  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_008061  Bcen_4061  short-chain dehydrogenase/reductase SDR  40.79 
 
 
281 aa  138  8.999999999999999e-32  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.786818  n/a   
 
 
-
 
NC_008543  Bcen2424_4305  short-chain dehydrogenase/reductase SDR  40.79 
 
 
281 aa  138  8.999999999999999e-32  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.699263 
 
 
-
 
NC_010511  M446_3398  short-chain dehydrogenase/reductase SDR  43.72 
 
 
265 aa  138  8.999999999999999e-32  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.162957 
 
 
-
 
NC_013159  Svir_38500  short-chain dehydrogenase of unknown substrate specificity  41.41 
 
 
253 aa  138  8.999999999999999e-32  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_3579  short-chain dehydrogenase/reductase SDR  45.41 
 
 
258 aa  137  1e-31  Thermomonospora curvata DSM 43183  Bacteria  normal  0.392131  n/a   
 
 
-
 
NC_010725  Mpop_0718  short-chain dehydrogenase/reductase SDR  39.29 
 
 
263 aa  137  1e-31  Methylobacterium populi BJ001  Bacteria  normal  0.520585  normal 
 
 
-
 
NC_014158  Tpau_0582  short-chain dehydrogenase/reductase SDR  45.64 
 
 
266 aa  138  1e-31  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_5145  putative Short-chain dehydrogenase/reductase SDR  38.36 
 
 
267 aa  138  1e-31  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.645114  normal  0.0551529 
 
 
-
 
NC_013947  Snas_6420  short-chain dehydrogenase/reductase SDR  41.06 
 
 
259 aa  137  2e-31  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_0308  short-chain dehydrogenase/reductase SDR  35.5 
 
 
266 aa  137  2e-31  Rhodoferax ferrireducens T118  Bacteria  normal  0.130238  n/a   
 
 
-
 
NC_010172  Mext_0209  short-chain dehydrogenase/reductase SDR  38.84 
 
 
262 aa  137  2e-31  Methylobacterium extorquens PA1  Bacteria  normal  0.128983  normal 
 
 
-
 
NC_014165  Tbis_2195  short-chain dehydrogenase/reductase SDR  42.97 
 
 
250 aa  137  2e-31  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.92313 
 
 
-
 
NC_011666  Msil_0129  short-chain dehydrogenase/reductase SDR  37.72 
 
 
271 aa  137  2e-31  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_013093  Amir_2216  short-chain dehydrogenase/reductase SDR  46.35 
 
 
266 aa  136  3.0000000000000003e-31  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_1269  short-chain dehydrogenase/reductase SDR  38.35 
 
 
294 aa  137  3.0000000000000003e-31  Sinorhizobium medicae WSM419  Bacteria  normal  0.618635  normal  0.87927 
 
 
-
 
NC_010515  Bcenmc03_3212  short-chain dehydrogenase/reductase SDR  40.79 
 
 
266 aa  137  3.0000000000000003e-31  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.177624  normal 
 
 
-
 
NC_010511  M446_2996  short-chain dehydrogenase/reductase SDR  43.26 
 
 
268 aa  136  4e-31  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.056073 
 
 
-
 
NC_010552  BamMC406_4199  short-chain dehydrogenase/reductase SDR  44.62 
 
 
266 aa  136  4e-31  Burkholderia ambifaria MC40-6  Bacteria  normal  0.308915  normal  0.0922746 
 
 
-
 
NC_012850  Rleg_0887  short-chain dehydrogenase/reductase SDR  33.77 
 
 
266 aa  136  5e-31  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
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