264 homologs were found in PanDaTox collection
for query gene Dde_3054 on replicon NC_007519
Organism: Desulfovibrio desulfuricans subsp. desulfuricans str. G20



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007519  Dde_3054  radical-activating enzyme  100 
 
 
302 aa  632  1e-180  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.969131  n/a   
 
 
-
 
NC_009253  Dred_2752  glycyl-radical activating family protein  45.82 
 
 
310 aa  244  9.999999999999999e-64  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_0367  glycyl-radical enzyme activating protein family  43.38 
 
 
310 aa  238  6.999999999999999e-62  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_2966  glycyl-radical activating family protein  47.79 
 
 
297 aa  234  2.0000000000000002e-60  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_1396  glycerol dehydratase activating enzyme  42.75 
 
 
322 aa  227  2e-58  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.214688  n/a   
 
 
-
 
NC_013421  Pecwa_4091  glycyl-radical enzyme activating protein family  40.68 
 
 
305 aa  224  2e-57  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_0980  glycyl-radical activating family protein  45.42 
 
 
297 aa  223  3e-57  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.131362 
 
 
-
 
NC_007643  Rru_A0916  pyruvate-formate lyase-activating enzyme  43.49 
 
 
306 aa  222  4.9999999999999996e-57  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0858803  n/a   
 
 
-
 
NC_007925  RPC_1176  glycyl-radical activating protein  43.59 
 
 
306 aa  222  4.9999999999999996e-57  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007519  Dde_1272  radical-activating enzyme  40.33 
 
 
309 aa  218  8.999999999999998e-56  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_0943  pyruvate-formate lyase-activating enzyme  40.32 
 
 
318 aa  216  5e-55  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.0115559  n/a   
 
 
-
 
NC_013173  Dbac_1586  glycyl-radical enzyme activating protein family  45.88 
 
 
314 aa  213  4.9999999999999996e-54  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.0487316  n/a   
 
 
-
 
NC_011146  Gbem_2500  glycyl-radical enzyme activating protein family  41.94 
 
 
294 aa  212  5.999999999999999e-54  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_013926  Aboo_0168  glycyl-radical enzyme activating protein family  40.81 
 
 
303 aa  212  7e-54  Aciduliprofundum boonei T469  Archaea  normal  0.465492  n/a   
 
 
-
 
NC_002939  GSU2102  pyruvate formate-lyase-activating enzyme, putative  39.46 
 
 
298 aa  211  9e-54  Geobacter sulfurreducens PCA  Bacteria  normal  0.510382  n/a   
 
 
-
 
NC_013173  Dbac_2365  glycyl-radical enzyme activating protein family  37.02 
 
 
306 aa  210  2e-53  Desulfomicrobium baculatum DSM 4028  Bacteria  hitchhiker  0.00000514278  n/a   
 
 
-
 
NC_013173  Dbac_2144  glycyl-radical enzyme activating protein family  40.6 
 
 
298 aa  208  8e-53  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_010718  Nther_2477  glycyl-radical enzyme activating protein family  37.59 
 
 
310 aa  208  8e-53  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.731109  normal 
 
 
-
 
NC_008751  Dvul_0490  glycyl-radical activating family protein  42.38 
 
 
307 aa  207  1e-52  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.164514 
 
 
-
 
NC_009438  Sputcn32_0207  glycyl-radical activating family protein  44.28 
 
 
306 aa  207  2e-52  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_3715  glycyl-radical enzyme activating protein family  34.39 
 
 
316 aa  204  2e-51  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_013517  Sterm_3704  glycyl-radical enzyme activating protein family  37.37 
 
 
304 aa  202  4e-51  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_013517  Sterm_1073  glycyl-radical enzyme activating protein family  37.37 
 
 
298 aa  200  3e-50  Sebaldella termitidis ATCC 33386  Bacteria  normal  0.949815  n/a   
 
 
-
 
NC_013522  Taci_1438  glycyl-radical enzyme activating protein family  41.03 
 
 
301 aa  197  2.0000000000000003e-49  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_013517  Sterm_3258  glycyl-radical enzyme activating protein family  36.56 
 
 
303 aa  194  2e-48  Sebaldella termitidis ATCC 33386  Bacteria  normal  0.807185  n/a   
 
 
-
 
NC_011830  Dhaf_1247  glycyl-radical enzyme activating protein family  38.02 
 
 
299 aa  192  6e-48  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_2192  glycyl-radical activating family protein  39.58 
 
 
307 aa  191  1e-47  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_3544  glycyl-radical enzyme activating protein family  34.39 
 
 
316 aa  190  2.9999999999999997e-47  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_013165  Shel_17450  glycyl-radical enzyme activator family protein  41.2 
 
 
311 aa  187  2e-46  Slackia heliotrinireducens DSM 20476  Bacteria  normal  0.478583  normal 
 
 
-
 
NC_011883  Ddes_1435  glycyl-radical enzyme activating protein family  40.91 
 
 
312 aa  187  2e-46  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_4904  glycyl-radical enzyme activating protein family  38.08 
 
 
327 aa  184  1.0000000000000001e-45  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_011883  Ddes_1358  glycyl-radical enzyme activating protein family  36.24 
 
 
310 aa  182  9.000000000000001e-45  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_3460  glycyl-radical enzyme activating protein family  43.68 
 
 
330 aa  180  2.9999999999999997e-44  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_3281  radical-activating enzyme  34.8 
 
 
320 aa  179  4.999999999999999e-44  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_1418  glycyl-radical activating family protein  37.87 
 
 
315 aa  179  5.999999999999999e-44  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_3277  glycyl-radical activating family protein  33.99 
 
 
318 aa  175  9.999999999999999e-43  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_011083  SeHA_C0974  glycyl-radical enzyme activating protein family  42.25 
 
 
299 aa  174  1.9999999999999998e-42  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.232079  normal 
 
 
-
 
NC_011149  SeAg_B0885  glycyl-radical enzyme activating protein family  42.25 
 
 
299 aa  174  1.9999999999999998e-42  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011080  SNSL254_A0912  glycyl-radical enzyme activating protein family  42.25 
 
 
299 aa  173  2.9999999999999996e-42  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_011205  SeD_A0945  glycyl-radical enzyme activating protein  42.25 
 
 
299 aa  173  2.9999999999999996e-42  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_011094  SeSA_A0995  glycyl-radical enzyme activating protein family  41.9 
 
 
299 aa  172  6.999999999999999e-42  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_009832  Spro_2641  glycyl-radical activating family protein  38.63 
 
 
299 aa  171  1e-41  Serratia proteamaculans 568  Bacteria  normal  hitchhiker  0.00101807 
 
 
-
 
NC_009436  Ent638_1318  glycyl-radical activating family protein  39.49 
 
 
299 aa  171  1e-41  Enterobacter sp. 638  Bacteria  normal  0.0352967  normal 
 
 
-
 
CP001509  ECD_00791  predicted pyruvate formate lyase activating enzyme  39.16 
 
 
308 aa  170  3e-41  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_00808  hypothetical protein  39.16 
 
 
308 aa  170  3e-41  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E2524  glycyl-radical enzyme activating protein family  39.16 
 
 
308 aa  169  7e-41  Shigella boydii CDC 3083-94  Bacteria  normal  0.275532  n/a   
 
 
-
 
NC_009800  EcHS_A0882  glycyl-radical activating family protein  39.86 
 
 
299 aa  168  1e-40  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_2820  glycyl-radical activating family protein  39.86 
 
 
299 aa  168  1e-40  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
CP001637  EcDH1_2818  glycyl-radical enzyme activating protein family  39.86 
 
 
299 aa  167  2e-40  Escherichia coli DH1  Bacteria  normal  0.0425809  n/a   
 
 
-
 
NC_009801  EcE24377A_0895  glycyl-radical activating family protein  39.86 
 
 
299 aa  167  2e-40  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_0849  glycyl-radical activating family protein  39.49 
 
 
299 aa  165  6.9999999999999995e-40  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_011353  ECH74115_0974  glycyl-radical enzyme activating protein  39.13 
 
 
299 aa  164  2.0000000000000002e-39  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_013517  Sterm_3029  glycyl-radical enzyme activating protein family  34.83 
 
 
260 aa  162  6e-39  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_004116  SAG0325  pyruvate formate-lyase-activating enzyme  35.09 
 
 
258 aa  162  7e-39  Streptococcus agalactiae 2603V/R  Bacteria  normal  0.719518  n/a   
 
 
-
 
NC_010001  Cphy_1175  glycyl-radical activating family protein  37.55 
 
 
263 aa  161  1e-38  Clostridium phytofermentans ISDg  Bacteria  normal  0.0579151  n/a   
 
 
-
 
NC_007517  Gmet_1541  glycyl-radical activating protein  35.02 
 
 
348 aa  159  6e-38  Geobacter metallireducens GS-15  Bacteria  normal  0.883211  normal  0.703307 
 
 
-
 
NC_011205  SeD_A4520  pyruvate formate lyase II activase  33.58 
 
 
292 aa  154  2e-36  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  hitchhiker  0.000270977 
 
 
-
 
NC_011080  SNSL254_A4446  pyruvate formate lyase II activase  33.58 
 
 
292 aa  154  2e-36  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.193926 
 
 
-
 
NC_010468  EcolC_4064  pyruvate formate lyase II activase  32.13 
 
 
292 aa  149  5e-35  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_011353  ECH74115_5412  pyruvate formate lyase II activase  32.03 
 
 
279 aa  149  5e-35  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
CP001509  ECD_03837  pyruvate formate lyase II activase  32.01 
 
 
292 aa  148  1.0000000000000001e-34  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_03786  hypothetical protein  32.01 
 
 
292 aa  148  1.0000000000000001e-34  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A4186  pyruvate formate lyase II activase  32.01 
 
 
292 aa  148  1.0000000000000001e-34  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_013457  VEA_001155  pyruvate formate-lyase activating enzyme  34.32 
 
 
309 aa  147  2.0000000000000003e-34  Vibrio sp. Ex25  Bacteria  hitchhiker  0.000234207  n/a   
 
 
-
 
NC_013517  Sterm_1938  glycyl-radical enzyme activating protein family  34.98 
 
 
273 aa  147  2.0000000000000003e-34  Sebaldella termitidis ATCC 33386  Bacteria  normal  0.239617  n/a   
 
 
-
 
NC_010498  EcSMS35_4399  pyruvate formate lyase II activase  31.77 
 
 
292 aa  147  2.0000000000000003e-34  Escherichia coli SMS-3-5  Bacteria  normal  0.710487  normal  0.473369 
 
 
-
 
NC_009801  EcE24377A_4491  pyruvate formate lyase II activase  32.12 
 
 
292 aa  147  2.0000000000000003e-34  Escherichia coli E24377A  Bacteria  normal  0.730323  n/a   
 
 
-
 
NC_010658  SbBS512_E4438  pyruvate formate lyase II activase  31.77 
 
 
292 aa  147  2.0000000000000003e-34  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_4034  glycyl-radical enzyme activating protein family  31.87 
 
 
292 aa  147  3e-34  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_1578  radical SAM family protein  30.94 
 
 
280 aa  144  1e-33  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_003978  pyruvate formate-lyase activating enzyme  30.2 
 
 
246 aa  130  3e-29  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A1460  pyruvate formate lyase-activating enzyme 1  30.69 
 
 
246 aa  125  7e-28  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_013721  HMPREF0424_0885  pyruvate formate-lyase 1-activating enzyme  26.87 
 
 
293 aa  123  3e-27  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_009012  Cthe_0506  pyruvate formate-lyase activating enzyme  28.94 
 
 
238 aa  122  9.999999999999999e-27  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.0339577  n/a   
 
 
-
 
NC_008262  CPR_0637  4Fe-4S ferredoxin iron-sulfur binding domain-containing protein  31.53 
 
 
273 aa  121  1.9999999999999998e-26  Clostridium perfringens SM101  Bacteria  normal  0.581706  n/a   
 
 
-
 
NC_009052  Sbal_2672  pyruvate formate lyase-activating enzyme 1  30.94 
 
 
246 aa  119  4.9999999999999996e-26  Shewanella baltica OS155  Bacteria  normal  0.209524  n/a   
 
 
-
 
NC_013517  Sterm_1777  (Formate-C-acetyltransferase)-activating enzyme  26.94 
 
 
279 aa  118  9.999999999999999e-26  Sebaldella termitidis ATCC 33386  Bacteria  unclonable  0.000000000493175  n/a   
 
 
-
 
NC_008345  Sfri_2474  pyruvate formate lyase-activating enzyme 1  29.04 
 
 
245 aa  118  9.999999999999999e-26  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_1497  pyruvate formate lyase-activating enzyme 1  29.54 
 
 
246 aa  117  1.9999999999999998e-25  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_1693  pyruvate formate lyase-activating enzyme 1  30.22 
 
 
246 aa  117  3e-25  Shewanella baltica OS223  Bacteria  hitchhiker  0.00927712  hitchhiker  0.00567391 
 
 
-
 
NC_010816  BLD_0692  pyruvate-formate lyase-activating enzyme  27.01 
 
 
293 aa  117  3e-25  Bifidobacterium longum DJO10A  Bacteria  normal  0.104164  n/a   
 
 
-
 
NC_011312  VSAL_I1953  pyruvate formate lyase-activating enzyme 1  28.99 
 
 
245 aa  117  3e-25  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_2770  pyruvate formate lyase-activating enzyme 1  30.22 
 
 
246 aa  117  3e-25  Shewanella baltica OS195  Bacteria  normal  0.789492  normal  0.831123 
 
 
-
 
NC_009665  Shew185_2691  pyruvate formate lyase-activating enzyme 1  30.22 
 
 
246 aa  117  3e-25  Shewanella baltica OS185  Bacteria  hitchhiker  0.00335137  n/a   
 
 
-
 
NC_009783  VIBHAR_01544  pyruvate formate-lyase 1 activating enzyme  35.35 
 
 
215 aa  116  3.9999999999999997e-25  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009438  Sputcn32_2379  pyruvate formate lyase-activating enzyme 1  29.56 
 
 
246 aa  115  7.999999999999999e-25  Shewanella putrefaciens CN-32  Bacteria  normal  0.0648375  n/a   
 
 
-
 
NC_008346  Swol_1049  pyruvate formate lyase activating enzyme  27.47 
 
 
246 aa  114  2.0000000000000002e-24  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_013203  Apar_0135  (Formate-C-acetyltransferase)-activating enzyme  28.9 
 
 
294 aa  114  3e-24  Atopobium parvulum DSM 20469  Bacteria  normal  normal  0.957254 
 
 
-
 
NC_008709  Ping_3308  pyruvate formate lyase-activating enzyme 1  33.17 
 
 
246 aa  113  5e-24  Psychromonas ingrahamii 37  Bacteria  normal  0.760643  normal 
 
 
-
 
NC_008321  Shewmr4_1493  pyruvate formate lyase-activating enzyme 1  29.35 
 
 
246 aa  112  1.0000000000000001e-23  Shewanella sp. MR-4  Bacteria  normal  0.0621061  normal  0.601453 
 
 
-
 
NC_008322  Shewmr7_1560  pyruvate formate lyase-activating enzyme 1  28.99 
 
 
246 aa  111  1.0000000000000001e-23  Shewanella sp. MR-7  Bacteria  normal  0.0861855  normal  0.127939 
 
 
-
 
NC_008577  Shewana3_1554  pyruvate formate lyase-activating enzyme 1  28.83 
 
 
246 aa  111  1.0000000000000001e-23  Shewanella sp. ANA-3  Bacteria  normal  normal  0.202343 
 
 
-
 
NC_004347  SO_2913  pyruvate formate lyase-activating enzyme 1  29.14 
 
 
246 aa  110  2.0000000000000002e-23  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009832  Spro_1701  pyruvate formate lyase-activating enzyme 1  29.56 
 
 
246 aa  111  2.0000000000000002e-23  Serratia proteamaculans 568  Bacteria  normal  normal  0.276107 
 
 
-
 
NC_013421  Pecwa_1996  pyruvate formate lyase-activating enzyme 1  28.52 
 
 
246 aa  110  2.0000000000000002e-23  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_1728  pyruvate formate lyase-activating enzyme 1  28.52 
 
 
246 aa  110  2.0000000000000002e-23  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.548183  n/a   
 
 
-
 
NC_012880  Dd703_2245  pyruvate formate lyase-activating enzyme 1  28.88 
 
 
246 aa  110  3e-23  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A1618  pyruvate formate lyase-activating enzyme 1  28.62 
 
 
244 aa  110  4.0000000000000004e-23  Yersinia pestis Angola  Bacteria  normal  0.344326  normal 
 
 
-
 
NC_009708  YpsIP31758_2591  pyruvate formate lyase-activating enzyme 1  28.62 
 
 
244 aa  110  4.0000000000000004e-23  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_008527  LACR_1999  pyruvate-formate lyase activating enzyme  26.33 
 
 
263 aa  109  6e-23  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  0.637211  n/a   
 
 
-
 
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