278 homologs were found in PanDaTox collection
for query gene PC1_3544 on replicon NC_012917
Organism: Pectobacterium carotovorum subsp. carotovorum PC1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012917  PC1_3544  glycyl-radical enzyme activating protein family  100 
 
 
316 aa  665    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_3715  glycyl-radical enzyme activating protein family  78.16 
 
 
316 aa  504  9.999999999999999e-143  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_3277  glycyl-radical activating family protein  50.65 
 
 
318 aa  320  1.9999999999999998e-86  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_4904  glycyl-radical enzyme activating protein family  47.78 
 
 
327 aa  298  6e-80  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_0943  pyruvate-formate lyase-activating enzyme  43.85 
 
 
318 aa  294  2e-78  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.0115559  n/a   
 
 
-
 
NC_007519  Dde_3281  radical-activating enzyme  46.08 
 
 
320 aa  285  8e-76  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_1418  glycyl-radical activating family protein  45.42 
 
 
315 aa  284  1.0000000000000001e-75  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_011883  Ddes_1358  glycyl-radical enzyme activating protein family  43.51 
 
 
310 aa  273  4.0000000000000004e-72  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_1396  glycerol dehydratase activating enzyme  40.54 
 
 
322 aa  236  4e-61  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.214688  n/a   
 
 
-
 
NC_010718  Nther_2477  glycyl-radical enzyme activating protein family  36.65 
 
 
310 aa  219  3.9999999999999997e-56  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.731109  normal 
 
 
-
 
NC_013173  Dbac_2365  glycyl-radical enzyme activating protein family  36.42 
 
 
306 aa  218  1e-55  Desulfomicrobium baculatum DSM 4028  Bacteria  hitchhiker  0.00000514278  n/a   
 
 
-
 
NC_013926  Aboo_0168  glycyl-radical enzyme activating protein family  40.48 
 
 
303 aa  216  2.9999999999999998e-55  Aciduliprofundum boonei T469  Archaea  normal  0.465492  n/a   
 
 
-
 
NC_013517  Sterm_1073  glycyl-radical enzyme activating protein family  36.93 
 
 
298 aa  211  1e-53  Sebaldella termitidis ATCC 33386  Bacteria  normal  0.949815  n/a   
 
 
-
 
NC_013421  Pecwa_4091  glycyl-radical enzyme activating protein family  36.3 
 
 
305 aa  211  2e-53  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_2500  glycyl-radical enzyme activating protein family  38.11 
 
 
294 aa  207  2e-52  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_1176  glycyl-radical activating protein  37.46 
 
 
306 aa  206  3e-52  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_009253  Dred_2752  glycyl-radical activating family protein  35.5 
 
 
310 aa  203  3e-51  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_1247  glycyl-radical enzyme activating protein family  36.95 
 
 
299 aa  199  7e-50  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_0980  glycyl-radical activating family protein  38.97 
 
 
297 aa  197  2.0000000000000003e-49  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.131362 
 
 
-
 
NC_009253  Dred_2966  glycyl-radical activating family protein  36.54 
 
 
297 aa  197  2.0000000000000003e-49  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_2192  glycyl-radical activating family protein  39.37 
 
 
307 aa  196  3e-49  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_0207  glycyl-radical activating family protein  35.97 
 
 
306 aa  196  5.000000000000001e-49  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU2102  pyruvate formate-lyase-activating enzyme, putative  35.69 
 
 
298 aa  196  6e-49  Geobacter sulfurreducens PCA  Bacteria  normal  0.510382  n/a   
 
 
-
 
NC_013522  Taci_1438  glycyl-radical enzyme activating protein family  35.6 
 
 
301 aa  195  9e-49  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_1586  glycyl-radical enzyme activating protein family  38.28 
 
 
314 aa  192  6e-48  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.0487316  n/a   
 
 
-
 
NC_013517  Sterm_3258  glycyl-radical enzyme activating protein family  35.37 
 
 
303 aa  191  2e-47  Sebaldella termitidis ATCC 33386  Bacteria  normal  0.807185  n/a   
 
 
-
 
NC_007519  Dde_3054  radical-activating enzyme  34.39 
 
 
302 aa  190  2.9999999999999997e-47  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.969131  n/a   
 
 
-
 
NC_007643  Rru_A0916  pyruvate-formate lyase-activating enzyme  37.2 
 
 
306 aa  190  2.9999999999999997e-47  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0858803  n/a   
 
 
-
 
NC_013517  Sterm_3704  glycyl-radical enzyme activating protein family  32.46 
 
 
304 aa  187  2e-46  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_0367  glycyl-radical enzyme activating protein family  35.64 
 
 
310 aa  186  5e-46  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_5412  pyruvate formate lyase II activase  32.8 
 
 
279 aa  184  2.0000000000000003e-45  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_010468  EcolC_4064  pyruvate formate lyase II activase  33.55 
 
 
292 aa  184  2.0000000000000003e-45  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
CP001637  EcDH1_4034  glycyl-radical enzyme activating protein family  34.83 
 
 
292 aa  183  3e-45  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_03837  pyruvate formate lyase II activase  33.22 
 
 
292 aa  183  4.0000000000000006e-45  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_4491  pyruvate formate lyase II activase  33.22 
 
 
292 aa  183  4.0000000000000006e-45  Escherichia coli E24377A  Bacteria  normal  0.730323  n/a   
 
 
-
 
NC_007519  Dde_1272  radical-activating enzyme  37.46 
 
 
309 aa  183  4.0000000000000006e-45  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_03786  hypothetical protein  33.22 
 
 
292 aa  183  4.0000000000000006e-45  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A4186  pyruvate formate lyase II activase  33.22 
 
 
292 aa  183  4.0000000000000006e-45  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_0490  glycyl-radical activating family protein  36.84 
 
 
307 aa  182  7e-45  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.164514 
 
 
-
 
NC_011205  SeD_A4520  pyruvate formate lyase II activase  32.57 
 
 
292 aa  181  1e-44  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  hitchhiker  0.000270977 
 
 
-
 
NC_010498  EcSMS35_4399  pyruvate formate lyase II activase  35.59 
 
 
292 aa  180  2.9999999999999997e-44  Escherichia coli SMS-3-5  Bacteria  normal  0.710487  normal  0.473369 
 
 
-
 
NC_010658  SbBS512_E4438  pyruvate formate lyase II activase  32.89 
 
 
292 aa  179  8e-44  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_011080  SNSL254_A4446  pyruvate formate lyase II activase  34.35 
 
 
292 aa  178  1e-43  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.193926 
 
 
-
 
NC_013173  Dbac_2144  glycyl-radical enzyme activating protein family  37.15 
 
 
298 aa  174  1.9999999999999998e-42  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_013457  VEA_001155  pyruvate formate-lyase activating enzyme  32.35 
 
 
309 aa  169  5e-41  Vibrio sp. Ex25  Bacteria  hitchhiker  0.000234207  n/a   
 
 
-
 
NC_013165  Shel_17450  glycyl-radical enzyme activator family protein  38.57 
 
 
311 aa  168  1e-40  Slackia heliotrinireducens DSM 20476  Bacteria  normal  0.478583  normal 
 
 
-
 
NC_013517  Sterm_3029  glycyl-radical enzyme activating protein family  31.97 
 
 
260 aa  165  1.0000000000000001e-39  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_013517  Sterm_1938  glycyl-radical enzyme activating protein family  30.94 
 
 
273 aa  160  3e-38  Sebaldella termitidis ATCC 33386  Bacteria  normal  0.239617  n/a   
 
 
-
 
NC_011883  Ddes_1435  glycyl-radical enzyme activating protein family  35.99 
 
 
312 aa  159  4e-38  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  n/a   
 
 
-
 
NC_004116  SAG0325  pyruvate formate-lyase-activating enzyme  30.33 
 
 
258 aa  159  5e-38  Streptococcus agalactiae 2603V/R  Bacteria  normal  0.719518  n/a   
 
 
-
 
NC_013421  Pecwa_3460  glycyl-radical enzyme activating protein family  37.02 
 
 
330 aa  159  9e-38  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_1175  glycyl-radical activating family protein  31.16 
 
 
263 aa  158  1e-37  Clostridium phytofermentans ISDg  Bacteria  normal  0.0579151  n/a   
 
 
-
 
NC_010658  SbBS512_E2524  glycyl-radical enzyme activating protein family  36.46 
 
 
308 aa  157  3e-37  Shigella boydii CDC 3083-94  Bacteria  normal  0.275532  n/a   
 
 
-
 
NC_009436  Ent638_1318  glycyl-radical activating family protein  34.23 
 
 
299 aa  156  6e-37  Enterobacter sp. 638  Bacteria  normal  0.0352967  normal 
 
 
-
 
NC_007517  Gmet_1541  glycyl-radical activating protein  33.89 
 
 
348 aa  155  7e-37  Geobacter metallireducens GS-15  Bacteria  normal  0.883211  normal  0.703307 
 
 
-
 
NC_010498  EcSMS35_0849  glycyl-radical activating family protein  35.49 
 
 
299 aa  155  7e-37  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
CP001509  ECD_00791  predicted pyruvate formate lyase activating enzyme  35.47 
 
 
308 aa  153  5e-36  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_2818  glycyl-radical enzyme activating protein family  35.47 
 
 
299 aa  152  5e-36  Escherichia coli DH1  Bacteria  normal  0.0425809  n/a   
 
 
-
 
NC_009801  EcE24377A_0895  glycyl-radical activating family protein  35.47 
 
 
299 aa  152  5e-36  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_00808  hypothetical protein  35.47 
 
 
308 aa  153  5e-36  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_2820  glycyl-radical activating family protein  35.47 
 
 
299 aa  152  5.9999999999999996e-36  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_009800  EcHS_A0882  glycyl-radical activating family protein  35.47 
 
 
299 aa  152  5.9999999999999996e-36  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_0974  glycyl-radical enzyme activating protein  35.14 
 
 
299 aa  151  2e-35  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_011205  SeD_A0945  glycyl-radical enzyme activating protein  34.39 
 
 
299 aa  148  1.0000000000000001e-34  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A0912  glycyl-radical enzyme activating protein family  34.39 
 
 
299 aa  148  1.0000000000000001e-34  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_011083  SeHA_C0974  glycyl-radical enzyme activating protein family  34.72 
 
 
299 aa  146  4.0000000000000006e-34  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.232079  normal 
 
 
-
 
NC_011149  SeAg_B0885  glycyl-radical enzyme activating protein family  34.72 
 
 
299 aa  146  4.0000000000000006e-34  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_2641  glycyl-radical activating family protein  33.11 
 
 
299 aa  145  7.0000000000000006e-34  Serratia proteamaculans 568  Bacteria  normal  hitchhiker  0.00101807 
 
 
-
 
NC_011094  SeSA_A0995  glycyl-radical enzyme activating protein family  34.04 
 
 
299 aa  145  8.000000000000001e-34  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_005945  BAS0482  pyruvate formate-lyase-activating enzyme  38.59 
 
 
243 aa  129  5.0000000000000004e-29  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_0491  pyruvate formate-lyase-activating enzyme  38.59 
 
 
243 aa  129  5.0000000000000004e-29  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_007530  GBAA_0510  pyruvate formate-lyase-activating enzyme  38.59 
 
 
243 aa  129  5.0000000000000004e-29  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_3391  pyruvate formate-lyase activating enzyme  34.85 
 
 
249 aa  129  7.000000000000001e-29  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_1671  pyruvate formate lyase-activating enzyme 1  34.88 
 
 
246 aa  129  7.000000000000001e-29  Shewanella pealeana ATCC 700345  Bacteria  normal  0.0803873  n/a   
 
 
-
 
NC_005957  BT9727_0425  formate acetyltransferase activating enzyme (pyruvate formate-lyase activating enzyme)  37.5 
 
 
243 aa  127  2.0000000000000002e-28  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B4810  pyruvate formate-lyase-activating enzyme  38.04 
 
 
243 aa  127  2.0000000000000002e-28  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_003909  BCE_0564  pyruvate formate-lyase-activating enzyme  37.3 
 
 
243 aa  127  3e-28  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK0421  formate acetyltransferase activating enzyme (pyruvate formate-lyase activating enzyme)  37.3 
 
 
243 aa  127  3e-28  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A0566  pyruvate formate-lyase-activating enzyme  37.3 
 
 
243 aa  127  3e-28  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A0513  pyruvate formate-lyase-activating enzyme  37.5 
 
 
243 aa  125  1e-27  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_0432  pyruvate formate-lyase activating enzyme  37.63 
 
 
243 aa  124  2e-27  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_2884  pyruvate formate lyase-activating enzyme 1  35.85 
 
 
246 aa  123  4e-27  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.00506631  hitchhiker  0.00000444162 
 
 
-
 
NC_013203  Apar_0135  (Formate-C-acetyltransferase)-activating enzyme  27.69 
 
 
294 aa  123  4e-27  Atopobium parvulum DSM 20469  Bacteria  normal  normal  0.957254 
 
 
-
 
NC_010184  BcerKBAB4_0427  pyruvate formate-lyase activating enzyme  35.6 
 
 
243 aa  123  5e-27  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_1497  pyruvate formate lyase-activating enzyme 1  36.22 
 
 
246 aa  120  1.9999999999999998e-26  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_2391  pyruvate formate lyase-activating enzyme 1  35.05 
 
 
246 aa  119  4.9999999999999996e-26  Shewanella loihica PV-4  Bacteria  normal  0.227753  normal  0.208715 
 
 
-
 
NC_009012  Cthe_0506  pyruvate formate-lyase activating enzyme  35.29 
 
 
238 aa  119  6e-26  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.0339577  n/a   
 
 
-
 
NC_013515  Smon_0297  pyruvate formate-lyase activating enzyme  28.51 
 
 
247 aa  117  1.9999999999999998e-25  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_009831  Ssed_1707  pyruvate formate lyase-activating enzyme 1  33.49 
 
 
246 aa  116  5e-25  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.0231805 
 
 
-
 
NC_009436  Ent638_1422  pyruvate formate lyase-activating enzyme 1  31.16 
 
 
246 aa  115  1.0000000000000001e-24  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_23160  pyruvate formate-lyase activating enzyme  37.22 
 
 
247 aa  114  2.0000000000000002e-24  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_2581  pyruvate formate-lyase activating enzyme  35.2 
 
 
240 aa  114  2.0000000000000002e-24  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_2672  pyruvate formate lyase-activating enzyme 1  32.55 
 
 
246 aa  113  4.0000000000000004e-24  Shewanella baltica OS155  Bacteria  normal  0.209524  n/a   
 
 
-
 
NC_009438  Sputcn32_2379  pyruvate formate lyase-activating enzyme 1  32.55 
 
 
246 aa  113  4.0000000000000004e-24  Shewanella putrefaciens CN-32  Bacteria  normal  0.0648375  n/a   
 
 
-
 
NC_008346  Swol_1049  pyruvate formate lyase activating enzyme  30.29 
 
 
246 aa  113  5e-24  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_2219  pyruvate formate lyase-activating enzyme 1  30.7 
 
 
246 aa  113  5e-24  Escherichia coli SMS-3-5  Bacteria  normal  normal  0.542279 
 
 
-
 
CP001509  ECD_00906  pyruvate formate lyase activating enzyme 1  30.7 
 
 
246 aa  112  8.000000000000001e-24  Escherichia coli BL21(DE3)  Bacteria  normal  0.84876  n/a   
 
 
-
 
CP001637  EcDH1_2741  pyruvate formate-lyase activating enzyme  30.7 
 
 
246 aa  112  8.000000000000001e-24  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_00913  hypothetical protein  30.7 
 
 
246 aa  112  8.000000000000001e-24  Escherichia coli BL21  Bacteria  normal  0.880778  n/a   
 
 
-
 
NC_010468  EcolC_2694  pyruvate formate lyase-activating enzyme 1  30.7 
 
 
246 aa  112  8.000000000000001e-24  Escherichia coli ATCC 8739  Bacteria  normal  normal  0.489101 
 
 
-
 
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