| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0885 |
|---|
| Symbol | pflA |
|---|
| ID | 8709377 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Gardnerella vaginalis 409-05 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013721 |
|---|
| Strand | - |
|---|
| Start bp | 1004485 |
|---|
| End bp | 1005366 |
|---|
| Gene Length | 882 bp |
|---|
| Protein Length | 293 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 646482985 |
|---|
| Product | pyruvate formate-lyase 1-activating enzyme |
|---|
| Protein accession | YP_003374101 |
|---|
| Protein GI | 283783347 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1180] Pyruvate-formate lyase-activating enzyme |
|---|
| TIGRFAM ID | [TIGR02493] pyruvate formate-lyase 1-activating enzyme |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGAAA ACACAGTGTT TCGTACTACA ACTCAGCATA TGCTGAAAGA GTCGAAAGAG
TATGCTCGCC AAACTTTAAT GGGTGGTCTT TCTGGATTTG AGTCGCCAAT TGGGCTGGAT
CGTAAAGATC GCTTGGTAGC TCTTAAAACT GGCGATATTG GATTTGTGCA TTCGTGGGAT
ATCAATACTT CTGTTGACGG CCCTGGAACT CGTATGACAG TGTTTATGAG TGGCTGCCCG
CTTCGCTGCC AGTACTGCCA AAATCCTGAT ACTTGGAAAA TGCGCGACGG CAAGCCAGTC
TACTTAGATG CGATGATTAA AAAAGTTGAT CGTTATCAAA GTCTTTTTAA AGCAACAGGC
GGTGGGATCA CTTTTTCTGG CGGCGAATCT ATGATGCAAC CAGCTTTTGT ATCTAGAGTG
TTTCGTGCAG CAAAAGAAAT GGGCGTGCAT ACTTGCTTGG ATACTTCCGG CTTTTTGAAT
CGCAATTACA CGGACGAAAT GATTGAAGAC ATTGATCTTT GTCTTCTTGA CGTTAAATCA
GGAACTGAAG AAACGTATAA AAAAGTAACT GGCGGCTTGC TTCAGCCAAC TATTGACTTT
GGCCAGCGCT TAGCGAAGGC TGGTAAGAAG ATTTGGGTGC GTTTTGTGCT TGTTCCAGGT
TTGACAGACA GCGAAGAAAA TGTTGAAAAA GTTGCTGAGA TTTGCGATTC GTTTGGTGAT
GCTGTTGAGC ATATTGACGT GCTTGGATTC CATCAACTAG GACGTCCAAA GTGGCATGAG
CTTCGAATTT CGTACCCTCT TGAGAATCAA AAAGGGCCTT CTAGAGCACT TAAAGAACGA
GTTGTAAACC AGTTCAAAGA TCACGGTTTT GTTGTGTACT AG
|
|---|
| Protein sequence | MAENTVFRTT TQHMLKESKE YARQTLMGGL SGFESPIGLD RKDRLVALKT GDIGFVHSWD
INTSVDGPGT RMTVFMSGCP LRCQYCQNPD TWKMRDGKPV YLDAMIKKVD RYQSLFKATG
GGITFSGGES MMQPAFVSRV FRAAKEMGVH TCLDTSGFLN RNYTDEMIED IDLCLLDVKS
GTEETYKKVT GGLLQPTIDF GQRLAKAGKK IWVRFVLVPG LTDSEENVEK VAEICDSFGD
AVEHIDVLGF HQLGRPKWHE LRISYPLENQ KGPSRALKER VVNQFKDHGF VVY
|
|---|
| |