| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1497 |
|---|
| Symbol | pflA |
|---|
| ID | 4603749 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 1811791 |
|---|
| End bp | 1812531 |
|---|
| Gene Length | 741 bp |
|---|
| Protein Length | 246 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 639780847 |
|---|
| Product | pyruvate formate lyase-activating enzyme 1 |
|---|
| Protein accession | YP_927374 |
|---|
| Protein GI | 119774634 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1180] Pyruvate-formate lyase-activating enzyme |
|---|
| TIGRFAM ID | [TIGR02493] pyruvate formate-lyase 1-activating enzyme |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAGTCA CAGGCAGGGT TCATTCAGTG GAATCCTTCG GCACAGTGGA CGGTCCCGGC
ATCAGGTTTA TCACCTTTAT GCAGGGTTGT CTGATGCGCT GCCAATACTG CCATAACCGT
GATACCTGGG ATTTGGATGG CGGCAAGGAA ATGCAGGTCG ATGAGCTGAT GAGTCAAATC
CTCAGCTATC GGCCTTTTTT GGATGCCAGC GGCGGCGGTG TCACTGCCAG TGGCGGTGAG
GCCATATTGC AGGCCGAATT TGTGGCCGAC CTGTTCAAGG CCTGCCGCGC CGAAGGCATT
CATACCTGTC TGGATACCAA TGGTTTCGTG CGAAAATACA CGCCCGCCAT TGATGTACTC
TTAGACAACA CCGATCTGGT GCTCTTGGAT ATCAAACACA TAGATGATGC CAAACATCAG
GATTTAACCA AGGTCAGCAA TCATCGCACC CTGCAGTTTG CCGAATACCT CGCCAAACGC
GACCAGAAAA CCTGGATCCG TTACGTGGTA GTCGCGGGCT TTACCGAAGA TGTAGAAAGT
GCTGAAAAAC TGGCTGATTT TATCGCCCCC ATGGGCAACG TGGAAAAGGT GGAACTGCTG
CCCTACCACG AGCTGGGCAA GCACAAGTGG GAAGCCATGG GTGAGGATTA TCCGCTCAAG
GGTGTTCATC CCCCCACCGC CGACACCATG GAAGCCATCA AGGCCGTGTT TACCCGCCGC
GGACTGACCG CGACTTATTA A
|
|---|
| Protein sequence | MTVTGRVHSV ESFGTVDGPG IRFITFMQGC LMRCQYCHNR DTWDLDGGKE MQVDELMSQI
LSYRPFLDAS GGGVTASGGE AILQAEFVAD LFKACRAEGI HTCLDTNGFV RKYTPAIDVL
LDNTDLVLLD IKHIDDAKHQ DLTKVSNHRT LQFAEYLAKR DQKTWIRYVV VAGFTEDVES
AEKLADFIAP MGNVEKVELL PYHELGKHKW EAMGEDYPLK GVHPPTADTM EAIKAVFTRR
GLTATY
|
|---|
| |