More than 300 homologs were found in PanDaTox collection
for query gene Avi_5406 on replicon NC_011988
Organism: Agrobacterium vitis S4



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011988  Avi_5406  ABC transporter membrane spanning protein  100 
 
 
251 aa  479  1e-134  Agrobacterium vitis S4  Bacteria  normal  0.408693  n/a   
 
 
-
 
NC_009654  Mmwyl1_2703  binding-protein-dependent transport systems inner membrane component  64.71 
 
 
263 aa  316  2e-85  Marinomonas sp. MWYL1  Bacteria  normal  0.88688  normal 
 
 
-
 
NC_012791  Vapar_1862  binding-protein-dependent transport systems inner membrane component  41.56 
 
 
257 aa  174  9.999999999999999e-43  Variovorax paradoxus S110  Bacteria  normal  0.116723  n/a   
 
 
-
 
NC_007778  RPB_3118  binding-protein dependent transport system inner membrane protein  43.97 
 
 
284 aa  172  3.9999999999999995e-42  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_0620  binding-protein-dependent transport systems inner membrane component  40.97 
 
 
254 aa  167  1e-40  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.63161  normal 
 
 
-
 
NC_013946  Mrub_1393  binding-protein-dependent transport systems inner membrane component  36.86 
 
 
254 aa  162  5.0000000000000005e-39  Meiothermus ruber DSM 1279  Bacteria  normal  0.302994  normal  0.157809 
 
 
-
 
NC_009720  Xaut_3758  binding-protein-dependent transport systems inner membrane component  35.83 
 
 
256 aa  153  2e-36  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_4254  binding-protein-dependent transport systems inner membrane component  35.98 
 
 
283 aa  152  5e-36  Conexibacter woesei DSM 14684  Bacteria  normal  0.0441349  normal  0.902161 
 
 
-
 
NC_009921  Franean1_3131  binding-protein-dependent transport systems inner membrane component  35.02 
 
 
281 aa  152  5.9999999999999996e-36  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_007973  Rmet_0394  binding-protein-dependent transport systems inner membrane component  35.96 
 
 
259 aa  150  3e-35  Cupriavidus metallidurans CH34  Bacteria  normal  hitchhiker  0.00657833 
 
 
-
 
NC_007802  Jann_3753  binding-protein-dependent transport systems inner membrane component  35.62 
 
 
268 aa  149  5e-35  Jannaschia sp. CCS1  Bacteria  normal  0.333865  normal 
 
 
-
 
NC_009669  Oant_4580  binding-protein-dependent transport systems inner membrane component  35.2 
 
 
257 aa  149  6e-35  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_1221  binding-protein-dependent transport systems inner membrane component  38.63 
 
 
246 aa  148  7e-35  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_007778  RPB_3093  binding-protein dependent transport system inner membrane protein  34.8 
 
 
259 aa  148  9e-35  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.942666 
 
 
-
 
NC_012791  Vapar_0620  binding-protein-dependent transport systems inner membrane component  37.93 
 
 
258 aa  142  4e-33  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_3606  binding-protein-dependent transport systems inner membrane component  35.66 
 
 
257 aa  140  1.9999999999999998e-32  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.071611 
 
 
-
 
NC_009253  Dred_3205  binding-protein-dependent transport systems inner membrane component  32.53 
 
 
265 aa  139  3.9999999999999997e-32  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.000457845  n/a   
 
 
-
 
NC_013739  Cwoe_3810  binding-protein-dependent transport systems inner membrane component  31.97 
 
 
258 aa  139  6e-32  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.42897 
 
 
-
 
NC_009523  RoseRS_0669  binding-protein-dependent transport systems inner membrane component  38.4 
 
 
272 aa  138  7e-32  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.0848141 
 
 
-
 
NC_012791  Vapar_3961  binding-protein-dependent transport systems inner membrane component  33.62 
 
 
256 aa  138  7e-32  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_0770  binding-protein-dependent transport systems inner membrane component  34.57 
 
 
273 aa  138  8.999999999999999e-32  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_1091  binding-protein-dependent transport systems inner membrane component  32.91 
 
 
258 aa  138  8.999999999999999e-32  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0347556  normal 
 
 
-
 
NC_010172  Mext_1719  binding-protein-dependent transport systems inner membrane component  36.36 
 
 
264 aa  137  1e-31  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_2985  binding-protein-dependent transport systems inner membrane component  33.76 
 
 
273 aa  137  2e-31  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_3645  binding-protein-dependent transport systems inner membrane component  35.66 
 
 
268 aa  137  2e-31  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_012792  Vapar_6052  binding-protein-dependent transport systems inner membrane component  33.94 
 
 
274 aa  136  4e-31  Variovorax paradoxus S110  Bacteria  normal  0.0454164  n/a   
 
 
-
 
NC_013203  Apar_0391  binding-protein-dependent transport systems inner membrane component  32.37 
 
 
257 aa  135  5e-31  Atopobium parvulum DSM 20469  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_2038  binding-protein-dependent transport systems inner membrane component  35.54 
 
 
264 aa  135  5e-31  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.697058  normal  0.743835 
 
 
-
 
NC_011830  Dhaf_0877  binding-protein-dependent transport systems inner membrane component  31.9 
 
 
260 aa  135  6.0000000000000005e-31  Desulfitobacterium hafniense DCB-2  Bacteria  decreased coverage  0.00000000112184  n/a   
 
 
-
 
NC_008786  Veis_2127  binding-protein-dependent transport systems inner membrane component  34.04 
 
 
255 aa  135  8e-31  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.427162 
 
 
-
 
NC_013457  VEA_000865  hydroxymethylpyrimidine ABC transporter transmembrane component  31.71 
 
 
266 aa  134  9.999999999999999e-31  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_007509  Bcep18194_C7650  ABC nitrate/sulfonate/bicarbonate transporter, inner membrane subunit  37.99 
 
 
247 aa  134  9.999999999999999e-31  Burkholderia sp. 383  Bacteria  normal  0.621765  normal 
 
 
-
 
NC_009485  BBta_1169  putative ABC transporter permease protein  30.35 
 
 
279 aa  134  9.999999999999999e-31  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_0666  binding-protein-dependent transport systems inner membrane component  37.45 
 
 
272 aa  134  1.9999999999999998e-30  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_009380  Strop_3877  binding-protein-dependent transport systems inner membrane component  35.1 
 
 
282 aa  134  1.9999999999999998e-30  Salinispora tropica CNB-440  Bacteria  normal  0.901388  normal 
 
 
-
 
NC_011772  BCG9842_B4547  putative ABC transporter, permease protein  40 
 
 
251 aa  133  3e-30  Bacillus cereus G9842  Bacteria  normal  0.113137  normal  0.441246 
 
 
-
 
NC_010184  BcerKBAB4_0643  binding-protein-dependent transport systems inner membrane component  40.72 
 
 
251 aa  133  3e-30  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_013165  Shel_13670  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  31.12 
 
 
249 aa  132  3.9999999999999996e-30  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal 
 
 
-
 
NC_003909  BCE_0797  ABC transporter, permease protein, putative  36.12 
 
 
250 aa  132  5e-30  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_1095  binding-protein-dependent transport systems inner membrane component  32.47 
 
 
255 aa  132  5e-30  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_010002  Daci_1140  binding-protein-dependent transport systems inner membrane component  32.19 
 
 
255 aa  132  6e-30  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_011725  BCB4264_A0784  putative ABC transporter, permease protein  40.86 
 
 
250 aa  132  6e-30  Bacillus cereus B4264  Bacteria  normal  0.605831  n/a   
 
 
-
 
NC_005945  BAS0693  ABC transporter permease  39.47 
 
 
250 aa  131  9e-30  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_0804  putative ABC transporter, permease protein  39.47 
 
 
250 aa  131  9e-30  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  1.22036e-46 
 
 
-
 
NC_007530  GBAA_0727  ABC transporter permease  39.47 
 
 
250 aa  131  9e-30  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.0363276  n/a   
 
 
-
 
NC_010001  Cphy_1151  binding-protein-dependent transport systems inner membrane component  31.98 
 
 
254 aa  131  9e-30  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_1488  binding-protein-dependent transport systems inner membrane component  36.44 
 
 
247 aa  131  9e-30  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_005957  BT9727_0637  ABC transporter, permease  40.32 
 
 
250 aa  131  1.0000000000000001e-29  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.00537874  n/a   
 
 
-
 
NC_006274  BCZK0637  ABC transporter, permease  39.47 
 
 
250 aa  131  1.0000000000000001e-29  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_3934  binding-protein-dependent transport systems inner membrane component  34.84 
 
 
278 aa  130  2.0000000000000002e-29  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.421742  normal 
 
 
-
 
NC_010725  Mpop_1095  binding-protein-dependent transport systems inner membrane component  35.71 
 
 
264 aa  130  2.0000000000000002e-29  Methylobacterium populi BJ001  Bacteria  normal  0.0240883  normal  0.166534 
 
 
-
 
NC_009784  VIBHAR_06840  ABC-type nitrate/sulfonate/bicarbonate transport system permease component  30.89 
 
 
266 aa  130  2.0000000000000002e-29  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011658  BCAH187_A0881  putative ABC transporter, permease protein  40.32 
 
 
251 aa  130  3e-29  Bacillus cereus AH187  Bacteria  hitchhiker  0.00328051  n/a   
 
 
-
 
NC_011313  VSAL_II0488  putative binding protein-dependent transport system, membrane component  34.69 
 
 
272 aa  129  3e-29  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.970837  n/a   
 
 
-
 
NC_009636  Smed_2372  binding-protein-dependent transport systems inner membrane component  35.44 
 
 
289 aa  129  5.0000000000000004e-29  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.239724 
 
 
-
 
NC_008148  Rxyl_2084  binding-protein-dependent transport systems inner membrane component  35.65 
 
 
260 aa  129  6e-29  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.566245  n/a   
 
 
-
 
NC_011894  Mnod_3419  binding-protein-dependent transport systems inner membrane component  33.86 
 
 
258 aa  127  1.0000000000000001e-28  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.121812  n/a   
 
 
-
 
NC_009953  Sare_4268  binding-protein-dependent transport systems inner membrane component  33.06 
 
 
282 aa  128  1.0000000000000001e-28  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.0113678 
 
 
-
 
NC_011831  Cagg_3116  binding-protein-dependent transport systems inner membrane component  35.93 
 
 
272 aa  127  2.0000000000000002e-28  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.025765  normal 
 
 
-
 
NC_009667  Oant_0344  binding-protein-dependent transport systems inner membrane component  33.05 
 
 
286 aa  127  2.0000000000000002e-28  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.113814  n/a   
 
 
-
 
NC_007643  Rru_A3455  binding-protein dependent transport system inner membrane protein  34.93 
 
 
322 aa  126  3e-28  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.833863  n/a   
 
 
-
 
NC_009674  Bcer98_0614  binding-protein-dependent transport systems inner membrane component  33.62 
 
 
250 aa  126  4.0000000000000003e-28  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_1668  binding-protein-dependent transport systems inner membrane component  33.88 
 
 
288 aa  125  6e-28  Nakamurella multipartita DSM 44233  Bacteria  normal  0.173855  normal  0.365472 
 
 
-
 
NC_013093  Amir_2627  binding-protein-dependent transport systems inner membrane component  33.03 
 
 
288 aa  125  8.000000000000001e-28  Actinosynnema mirum DSM 43827  Bacteria  normal  0.752734  n/a   
 
 
-
 
NC_013521  Sked_02100  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  35.38 
 
 
308 aa  124  1e-27  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_3099  binding-protein dependent transport system inner membrane protein  35.21 
 
 
261 aa  124  1e-27  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.578785 
 
 
-
 
NC_013525  Tter_0403  binding-protein-dependent transport systems inner membrane component  28.88 
 
 
271 aa  125  1e-27  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_011989  Avi_3460  ABC transporter membrane spanning protein  34.73 
 
 
288 aa  124  1e-27  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_2116  binding-protein-dependent transport systems inner membrane component  30.04 
 
 
253 aa  124  1e-27  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_2295  binding-protein-dependent transport systems inner membrane component  32.61 
 
 
272 aa  124  2e-27  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_2296  binding-protein-dependent transport systems inner membrane component  33.61 
 
 
250 aa  124  2e-27  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_009428  Rsph17025_0588  binding-protein-dependent transport systems inner membrane component  38.33 
 
 
238 aa  123  2e-27  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.98825  normal 
 
 
-
 
NC_012669  Bcav_0452  binding-protein-dependent transport systems inner membrane component  33.75 
 
 
252 aa  122  4e-27  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.0467336 
 
 
-
 
NC_014151  Cfla_3017  binding-protein-dependent transport systems inner membrane component  34.75 
 
 
253 aa  123  4e-27  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.946292  normal 
 
 
-
 
NC_013515  Smon_0476  binding-protein-dependent transport systems inner membrane component  31.06 
 
 
249 aa  122  4e-27  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_013517  Sterm_2064  binding-protein-dependent transport systems inner membrane component  30.97 
 
 
254 aa  121  9.999999999999999e-27  Sebaldella termitidis ATCC 33386  Bacteria  hitchhiker  0.00112586  n/a   
 
 
-
 
NC_007953  Bxe_C0801  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  33.75 
 
 
298 aa  121  9.999999999999999e-27  Burkholderia xenovorans LB400  Bacteria  normal  0.0745387  normal 
 
 
-
 
NC_013743  Htur_0669  binding-protein-dependent transport systems inner membrane component  38.25 
 
 
258 aa  120  1.9999999999999998e-26  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_008148  Rxyl_3035  binding-protein-dependent transport systems inner membrane component  33.19 
 
 
256 aa  120  1.9999999999999998e-26  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_2046  binding-protein-dependent transport systems inner membrane component  32.62 
 
 
286 aa  120  1.9999999999999998e-26  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_2763  binding-protein-dependent transport systems inner membrane component  32.27 
 
 
275 aa  120  1.9999999999999998e-26  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_009524  PsycPRwf_1445  binding-protein-dependent transport systems inner membrane component  30.45 
 
 
259 aa  120  1.9999999999999998e-26  Psychrobacter sp. PRwf-1  Bacteria  normal  normal  0.318112 
 
 
-
 
NC_013093  Amir_4889  binding-protein-dependent transport systems inner membrane component  32.64 
 
 
258 aa  119  4.9999999999999996e-26  Actinosynnema mirum DSM 43827  Bacteria  normal  0.90454  n/a   
 
 
-
 
NC_014210  Ndas_4504  binding-protein-dependent transport systems inner membrane component  32.82 
 
 
281 aa  119  6e-26  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_4887  binding-protein-dependent transport systems inner membrane component  30.71 
 
 
267 aa  119  6e-26  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_008044  TM1040_1494  binding-protein-dependent transport systems inner membrane component  33.91 
 
 
281 aa  119  6e-26  Ruegeria sp. TM1040  Bacteria  normal  0.58323  normal 
 
 
-
 
NC_011365  Gdia_3269  binding-protein-dependent transport systems inner membrane component  33.48 
 
 
253 aa  118  7e-26  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.283078  normal 
 
 
-
 
NC_011725  BCB4264_A0446  putative ABC transporter, permease protein  28.99 
 
 
257 aa  119  7e-26  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_1263  ABC transporter permease  33.62 
 
 
262 aa  118  7.999999999999999e-26  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.165267 
 
 
-
 
NC_006274  BCZK0354  ABC transporter, permease  29.41 
 
 
265 aa  118  9.999999999999999e-26  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_0891  binding-protein-dependent transport systems inner membrane component  32.49 
 
 
268 aa  118  9.999999999999999e-26  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.223421 
 
 
-
 
NC_009485  BBta_7629  putative ABC transporter permease protein  31.44 
 
 
282 aa  118  9.999999999999999e-26  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.262472  normal  0.441686 
 
 
-
 
NC_012880  Dd703_0037  binding-protein-dependent transport systems inner membrane component  33.91 
 
 
362 aa  117  9.999999999999999e-26  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_0491  ABC transporter, permease protein, putative  29.41 
 
 
257 aa  117  1.9999999999999998e-25  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS0367  ABC transporter permease  29.41 
 
 
265 aa  117  1.9999999999999998e-25  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_0357  ABC transporter, permease  29.41 
 
 
265 aa  117  1.9999999999999998e-25  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_0424  putative ABC transporter, permease protein  29.41 
 
 
257 aa  117  1.9999999999999998e-25  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_011772  BCG9842_B4878  putative ABC transporter, permease protein  28.99 
 
 
255 aa  117  1.9999999999999998e-25  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_007530  GBAA_0381  ABC transporter permease  29.41 
 
 
257 aa  117  1.9999999999999998e-25  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_0926  binding-protein-dependent transport systems inner membrane component  36.12 
 
 
249 aa  117  1.9999999999999998e-25  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.04587  n/a   
 
 
-
 
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