86 homologs were found in PanDaTox collection
for query gene Sked_37570 on replicon NC_013521
Organism: Sanguibacter keddieii DSM 10542



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_013521  Sked_37570  periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein)  100 
 
 		 333 aa  650    Sanguibacter keddieii DSM 10542  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012669  Bcav_2671  Substrate-binding region of ABC-type glycine betaine transport system  54.55 
 
 		 336 aa  318  6e-86  Beutenbergia cavernae DSM 12333  Bacteria  normal  1  normal  0.0862575 
 
 
-
 
NC_014151  Cfla_1338  Substrate-binding region of ABC-type glycine betaine transport system  53.4 
 
 		 337 aa  315  7e-85  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.591511  hitchhiker  0.000311431 
 
 
-
 
NC_009953  Sare_4723  substrate-binding region of ABC-type glycine betaine transport system  54.13 
 
 		 378 aa  307  1.0000000000000001e-82  Salinispora arenicola CNS-205  Bacteria  normal  1  decreased coverage  0.0000278675 
 
 
-
 
NC_013530  Xcel_1078  Substrate-binding region of ABC-type glycine betaine transport system  55.06 
 
 		 341 aa  301  1e-80  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.594312  n/a   
 
 
-
 
NC_009380  Strop_4288  substrate-binding region of ABC-type glycine betaine transport system  55.62 
 
 		 377 aa  281  1e-74  Salinispora tropica CNB-440  Bacteria  normal  1  normal  0.591163 
 
 
-
 
NC_013757  Gobs_0626  Substrate-binding region of ABC-type glycine betaine transport system  50.85 
 
 		 337 aa  268  1e-70  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.205752  n/a   
 
 
-
 
NC_013947  Snas_1036  Substrate-binding region of ABC-type glycine betaine transport system  42.99 
 
 		 339 aa  244  1.9999999999999999e-63  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  1  normal  0.179609 
 
 
-
 
NC_009921  Franean1_0156  substrate-binding region of ABC-type glycine betaine transport system  39.29 
 
 		 344 aa  148  1.0000000000000001e-34  Frankia sp. EAN1pec  Bacteria  normal  1  normal  0.0633468 
 
 
-
 
NC_011989  Avi_0504  ABC transporter substrate binding protein (proline/glycine/betaine)  36.54 
 
 		 304 aa  134  1.9999999999999998e-30  Agrobacterium vitis S4  Bacteria  normal  1  n/a   
 
 
-
 
NC_007963  Csal_1701  periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system-like protein  34.39 
 
 		 324 aa  118  1.9999999999999998e-25  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.656408  n/a   
 
 
-
 
NC_013169  Ksed_26230  periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein)  34.76 
 
 		 300 aa  117  1.9999999999999998e-25  Kytococcus sedentarius DSM 20547  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013235  Namu_1403  Substrate-binding region of ABC-type glycine betaine transport system  34.52 
 
 		 324 aa  114  3e-24  Nakamurella multipartita DSM 44233  Bacteria  normal  0.619701  normal  0.504767 
 
 
-
 
NC_009664  Krad_1293  Substrate-binding region of ABC-type glycine betaine transport system  37.81 
 
 		 311 aa  112  7.000000000000001e-24  Kineococcus radiotolerans SRS30216  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013510  Tcur_3633  Substrate-binding region of ABC-type glycine betaine transport system  32.35 
 
 		 303 aa  108  1e-22  Thermomonospora curvata DSM 43183  Bacteria  normal  0.669788  n/a   
 
 
-
 
NC_013421  Pecwa_4556  Substrate-binding region of ABC-type glycine betaine transport system  34.48 
 
 		 293 aa  108  1e-22  Pectobacterium wasabiae WPP163  Bacteria  normal  1  n/a   
 
 
-
 
NC_013174  Jden_2261  Substrate-binding region of ABC-type glycine betaine transport system  30.85 
 
 		 306 aa  106  4e-22  Jonesia denitrificans DSM 20603  Bacteria  normal  0.989377  normal  0.378374 
 
 
-
 
NC_013595  Sros_8178  ABC transporter substrate binding protein (proline/glycine/betaine)  31.84 
 
 		 304 aa  104  2e-21  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008699  Noca_0455  substrate-binding region of ABC-type glycine betaine transport system  35.38 
 
 		 318 aa  103  4e-21  Nocardioides sp. JS614  Bacteria  normal  1  n/a   
 
 
-
 
NC_011886  Achl_2554  Substrate-binding region of ABC-type glycine betaine transport system  32.68 
 
 		 320 aa  102  8e-21  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.000000921458 
 
 
-
 
NC_008541  Arth_2839  substrate-binding region of ABC-type glycine betaine transport system  30.54 
 
 		 318 aa  100  3e-20  Arthrobacter sp. FB24  Bacteria  normal  0.0104087  n/a   
 
 
-
 
NC_014210  Ndas_0400  Substrate-binding region of ABC-type glycine betaine transport system  31.98 
 
 		 300 aa  99.8  6e-20  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008726  Mvan_5601  substrate-binding region of ABC-type glycine betaine transport system  29.3 
 
 		 316 aa  99.8  6e-20  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008705  Mkms_5055  substrate-binding region of ABC-type glycine betaine transport system  30.09 
 
 		 314 aa  99.4  7e-20  Mycobacterium sp. KMS  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008146  Mmcs_4967  substrate-binding region of ABC-type glycine betaine transport system  30.09 
 
 		 314 aa  99.4  7e-20  Mycobacterium sp. MCS  Bacteria  normal  1  n/a   
 
 
-
 
NC_009077  Mjls_5348  substrate-binding region of ABC-type glycine betaine transport system  30.09 
 
 		 314 aa  99  1e-19  Mycobacterium sp. JLS  Bacteria  normal  0.684846  normal  1 
 
 
-
 
NC_009338  Mflv_1207  substrate-binding region of ABC-type glycine betaine transport system  30.23 
 
 		 316 aa  97.4  3e-19  Mycobacterium gilvum PYR-GCK  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013131  Caci_3084  Substrate-binding region of ABC-type glycine betaine transport system  31.66 
 
 		 302 aa  93.2  5e-18  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.503055  normal  0.205604 
 
 
-
 
NC_013172  Bfae_30010  periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein)  30.1 
 
 		 315 aa  89.4  7e-17  Brachybacterium faecium DSM 4810  Bacteria  normal  0.107926  n/a   
 
 
-
 
NC_013131  Caci_3081  Substrate-binding region of ABC-type glycine betaine transport system  30.21 
 
 		 304 aa  80.5  0.00000000000004  Catenulispora acidiphila DSM 44928  Bacteria  normal  1  normal  0.0356905 
 
 
-
 
NC_009565  TBFG_13791  osmoprotectant (glycine betaine/carnitine/choline/L-proline) transport system substrate binding lipoprotein proX  33.18 
 
 		 315 aa  79.3  0.00000000000009  Mycobacterium tuberculosis F11  Bacteria  normal  1  normal  0.643874 
 
 
-
 
NC_009523  RoseRS_1816  substrate-binding region of ABC-type glycine betaine transport system  32.66 
 
 		 310 aa  77.8  0.0000000000002  Roseiflexus sp. RS-1  Bacteria  normal  1  normal  0.0119683 
 
 
-
 
NC_009767  Rcas_2529  substrate-binding region of ABC-type glycine betaine transport system  32.16 
 
 		 316 aa  77  0.0000000000005  Roseiflexus castenholzii DSM 13941  Bacteria  normal  1  hitchhiker  0.00436468 
 
 
-
 
NC_009972  Haur_0350  substrate-binding region of ABC-type glycine betaine transport system  27 
 
 		 313 aa  71.2  0.00000000002  Herpetosiphon aurantiacus ATCC 23779  Bacteria  hitchhiker  0.000721097  n/a   
 
 
-
 
NC_011884  Cyan7425_4275  Substrate-binding region of ABC-type glycine betaine transport system  27.49 
 
 		 304 aa  68.9  0.0000000001  Cyanothece sp. PCC 7425  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013093  Amir_6268  Substrate-binding region of ABC-type glycine betaine transport system  27.78 
 
 		 294 aa  67.8  0.0000000003  Actinosynnema mirum DSM 43827  Bacteria  normal  1  n/a   
 
 
-
 
NC_013132  Cpin_4963  binding-protein-dependent transport systems inner membrane component  31.94 
 
 		 522 aa  66.6  0.0000000006  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0875398  normal  0.252786 
 
 
-
 
NC_008254  Meso_2977  substrate-binding region of ABC-type glycine betaine transport system  30.15 
 
 		 343 aa  66.2  0.0000000008  Chelativorans sp. BNC1  Bacteria  normal  0.0119882  n/a   
 
 
-
 
NC_013739  Cwoe_3262  Substrate-binding region of ABC-type glycine betaine transport system  29.7 
 
 		 322 aa  66.2  0.0000000008  Conexibacter woesei DSM 14684  Bacteria  normal  0.310022  normal  0.0153041 
 
 
-
 
NC_011899  Hore_18420  Substrate-binding region of ABC-type glycine betaine transport system  25.57 
 
 		 316 aa  62.8  0.000000007  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.00000366323  n/a   
 
 
-
 
NC_007963  Csal_2356  substrate-binding region of ABC-type glycine betaine transport system  27.86 
 
 		 294 aa  63.2  0.000000007  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.427621  n/a   
 
 
-
 
NC_013037  Dfer_1250  binding-protein-dependent transport systems inner membrane component  26.76 
 
 		 525 aa  60.8  0.00000003  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.615651  normal  0.522042 
 
 
-
 
NC_008688  Pden_4888  substrate-binding region of ABC-type glycine betaine transport system  28.28 
 
 		 294 aa  58.2  0.0000002  Paracoccus denitrificans PD1222  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009621  Smed_5103  substrate-binding region of ABC-type glycine betaine transport system  25.61 
 
 		 296 aa  57  0.0000005  Sinorhizobium medicae WSM419  Bacteria  normal  1  normal  0.257354 
 
 
-
 
NC_008786  Veis_2911  substrate-binding region of ABC-type glycine betaine transport system  25.67 
 
 		 301 aa  56.6  0.0000006  Verminephrobacter eiseniae EF01-2  Bacteria  normal  1  normal  0.107648 
 
 
-
 
NC_007963  Csal_2348  substrate-binding region of ABC-type glycine betaine transport system  25.89 
 
 		 298 aa  56.2  0.0000008  Chromohalobacter salexigens DSM 3043  Bacteria  normal  1  n/a   
 
 
-
 
NC_008262  CPR_0522  glycine betaine/carnitine/choline ABC transporter, permease/substrate-binding protein  24.86 
 
 		 517 aa  55.1  0.000002  Clostridium perfringens SM101  Bacteria  normal  0.271995  n/a   
 
 
-
 
NC_009513  Lreu_0184  substrate-binding region of ABC-type glycine betaine transport system  25.62 
 
 		 299 aa  54.3  0.000003  Lactobacillus reuteri DSM 20016  Bacteria  normal  1  n/a   
 
 
-
 
NC_011830  Dhaf_2802  Substrate-binding region of ABC-type glycine betaine transport system  27.68 
 
 		 317 aa  53.5  0.000004  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.00000741743  n/a   
 
 
-
 
NC_007948  Bpro_1158  substrate-binding region of ABC-type glycine betaine transport system  25.81 
 
 		 293 aa  53.1  0.000007  Polaromonas sp. JS666  Bacteria  normal  0.590027  normal  1 
 
 
-
 
NC_008261  CPF_0538  glycine betaine/L-proline ABC transporter, permease/glycine betaine/L-proline-binding protein  24.32 
 
 		 517 aa  52.4  0.00001  Clostridium perfringens ATCC 13124  Bacteria  normal  0.863672  n/a   
 
 
-
 
NC_012793  GWCH70_0298  Substrate-binding region of ABC-type glycine betaine transport system  25.24 
 
 		 300 aa  51.2  0.00002  Geobacillus sp. WCH70  Bacteria  normal  1  n/a   
 
 
-
 
NC_010003  Pmob_1128  substrate-binding region of ABC-type glycine betaine transport system  25.49 
 
 		 294 aa  52  0.00002  Petrotoga mobilis SJ95  Bacteria  normal  0.906402  n/a   
 
 
-
 
NC_007484  Noc_0540  ABC transporter inner membrane/substrate-binding proteins  26.29 
 
 		 501 aa  50.8  0.00003  Nitrosococcus oceani ATCC 19707  Bacteria  normal  1  n/a   
 
 
-
 
NC_007963  Csal_2357  substrate-binding region of ABC-type glycine betaine transport system  27.46 
 
 		 300 aa  50.4  0.00004  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.0367531  n/a   
 
 
-
 
NC_010003  Pmob_0462  substrate-binding region of ABC-type glycine betaine transport system  24.88 
 
 		 297 aa  49.7  0.00008  Petrotoga mobilis SJ95  Bacteria  normal  1  n/a   
 
 
-
 
NC_010320  Teth514_1203  substrate-binding region of ABC-type glycine betaine transport system  25.12 
 
 		 304 aa  48.9  0.0001  Thermoanaerobacter sp. X514  Bacteria  normal  1  n/a   
 
 
-
 
NC_008527  LACR_0914  choline ABC transporter permease and substrate binding protein  26.71 
 
 		 500 aa  49.3  0.0001  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  0.222381  n/a   
 
 
-
 
NC_007347  Reut_A2495  substrate-binding region of ABC-type glycine betaine transport system  34.18 
 
 		 315 aa  48.1  0.0002  Ralstonia eutropha JMP134  Bacteria  normal  1  n/a   
 
 
-
 
NC_013730  Slin_0317  binding-protein-dependent transport systems inner membrane component  26.85 
 
 		 519 aa  48.1  0.0002  Spirosoma linguale DSM 74  Bacteria  normal  1  normal  0.417886 
 
 
-
 
NC_008463  PA14_13600  putative binding protein component of ABC transporter  33.75 
 
 		 311 aa  47  0.0004  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008786  Veis_2247  substrate-binding region of ABC-type glycine betaine transport system  31.65 
 
 		 299 aa  47  0.0005  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.242692  normal  1 
 
 
-
 
NC_010682  Rpic_2784  Substrate-binding region of ABC-type glycine betaine transport system  28.14 
 
 		 504 aa  46.6  0.0006  Ralstonia pickettii 12J  Bacteria  normal  1  normal  1 
 
 
-
 
NC_003295  RSc2516  putative lipoprotein transmembrane  27.78 
 
 		 520 aa  46.2  0.0007  Ralstonia solanacearum GMI1000  Bacteria  normal  0.2714  hitchhiker  0.00948908 
 
 
-
 
NC_012791  Vapar_1735  Substrate-binding region of ABC-type glycine betaine transport system  31.75 
 
 		 509 aa  46.2  0.0008  Variovorax paradoxus S110  Bacteria  normal  1  n/a   
 
 
-
 
NC_009565  TBFG_11270  lipoprotein lpqZ  26.81 
 
 		 286 aa  45.4  0.001  Mycobacterium tuberculosis F11  Bacteria  hitchhiker  0.00000000341327  hitchhiker  0.00148817 
 
 
-
 
NC_008148  Rxyl_0580  substrate-binding region of ABC-type glycine betaine transport system  24.38 
 
 		 321 aa  45.4  0.001  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  1  n/a   
 
 
-
 
NC_013440  Hoch_5205  Substrate-binding region of ABC-type glycine betaine transport system  26.83 
 
 		 537 aa  45.8  0.001  Haliangium ochraceum DSM 14365  Bacteria  normal  0.057164  normal  1 
 
 
-
 
NC_013411  GYMC61_1176  Substrate-binding region of ABC-type glycine betaine transport system  25.15 
 
 		 300 aa  45.4  0.001  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_012856  Rpic12D_2379  Substrate-binding region of ABC-type glycine betaine transport system  27.78 
 
 		 518 aa  45.4  0.001  Ralstonia pickettii 12D  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010338  Caul_1376  substrate-binding region of ABC-type glycine betaine transport system  30.12 
 
 		 515 aa  44.7  0.002  Caulobacter sp. K31  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008544  Bcen2424_6100  substrate-binding region of ABC-type glycine betaine transport system  22.39 
 
 		 303 aa  43.9  0.003  Burkholderia cenocepacia HI2424  Bacteria  normal  0.657411  normal  1 
 
 
-
 
NC_007778  RPB_3337  substrate-binding region of ABC-type glycine betaine transport system  29.89 
 
 		 519 aa  44.7  0.003  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.917916  normal  0.224892 
 
 
-
 
NC_013457  VEA_001532  putative ABC transporter periplasmic binding protein  23.35 
 
 		 293 aa  44.3  0.003  Vibrio sp. Ex25  Bacteria  normal  0.65277  n/a   
 
 
-
 
NC_010512  Bcenmc03_6582  substrate-binding region of ABC-type glycine betaine transport system  22.39 
 
 		 303 aa  44.3  0.003  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.100226  normal  0.0117418 
 
 
-
 
NC_008062  Bcen_5736  substrate-binding region of ABC-type glycine betaine transport system  22.39 
 
 		 303 aa  43.9  0.003  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.518221  n/a   
 
 
-
 
NC_007952  Bxe_B2994  glycine betaine/choline/proline ABC transporter periplasmic ligand-binding protein  30.38 
 
 		 298 aa  44.3  0.003  Burkholderia xenovorans LB400  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011149  SeAg_B1679  substrate-binding region of ABC-type glycine betaine transport system  21.18 
 
 		 300 aa  43.5  0.004  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.165164  n/a   
 
 
-
 
NC_011205  SeD_A1846  substrate-binding region of ABC glycine betaine transport system  21.18 
 
 		 300 aa  43.9  0.004  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.440983  normal  1 
 
 
-
 
NC_011094  SeSA_A1595  substrate-binding region of ABC-type glycine betaine transport system  21.18 
 
 		 300 aa  43.9  0.004  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  1  normal  0.379851 
 
 
-
 
NC_011083  SeHA_C1663  substrate-binding region of ABC-type glycine betaine transport system  21.18 
 
 		 300 aa  43.9  0.004  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011080  SNSL254_A1604  substrate-binding region of ABC-type glycine betaine transport system  21.18 
 
 		 300 aa  43.9  0.004  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010117  COXBURSA331_A0267  quaternary amine ABC transporter periplasmic substrate-binding protein  19.9 
 
 		 526 aa  43.9  0.004  Coxiella burnetii RSA 331  Bacteria  normal  1  n/a   
 
 
-
 
NC_009656  PSPA7_1217  putative ABC transporter binding protein subunit  32.5 
 
 		 311 aa  43.9  0.004  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_007509  Bcep18194_C7551  ABC glycine betaine/choline-binding transporter, periplasmic ligand binding protein  22.77 
 
 		 303 aa  43.5  0.005  Burkholderia sp. 383  Bacteria  normal  0.694796  normal  0.538573 
 
 
-
 
NC_009727  CBUD_1923  glycine betaine transport system permease protein  19.9 
 
 		 526 aa  43.5  0.005  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  1  n/a   
 
 
-
 
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