| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc2516 |
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| Symbol | |
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| ID | 1221363 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | + |
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| Start bp | 2722559 |
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| End bp | 2724121 |
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| Gene Length | 1563 bp |
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| Protein Length | 520 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 637238917 |
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| Product | putative lipoprotein transmembrane |
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| Protein accession | NP_520637 |
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| Protein GI | 17547235 |
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| COG category | [E] Amino acid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1174] ABC-type proline/glycine betaine transport systems, permease component
[COG1732] Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.2714 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.00948908 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | TTGGATACAC GGCGACTGAT CCGCAATCCG TTCCTGCGGC GCCTCCTGGC ATGGATGGCG
CTCGGATGGC TGGCGTGCGG CACGCTGGCC TGGGCGGAAG CGCCGCTGCG GATCGGCTCC
AAGCGCTTCA CCGAAGCCTA CGTCCTGGGC GAGGTGCTGA CGCAGGCCGC CGCCCCGCAT
GGCCCCGCCG AACACGTTCC GGGACTCGGC AACACGGCGA TCGTCTTTGC CGCGCTCAGG
AGCGGCAGCA TCGACCTCTA TCCCGACTAC CTCGGCACCA TCGCCGCCGA GATCCTGCAC
CTGCCGCCCG CGCAGGCGGC CAATCCGGAC CAGGCCGCGC TGCTGGCCGA CGTCAACCGC
GCGCTGGCGC CGCTGGGCCT GGGCGCGGGC GTGCCGCTCG GCTTCGAGGA CACCTATGCG
CTCGCCATGC GCGAGGCCGA CGCCGAACGC GAGGGCATCC GCACGCTGGC CGACCTGGCG
GCACACCCCG CGCTGCGGCT GGGGCTGTCG CACGAATTCC TCGGCCGCGC GGACGGCTGG
CCGGCGCTCG TCCGGCGCTA CGGCCTGCCG CAGCAGCCGA CCGGCCTCGA CCACGGCGTC
GCCTACGACG CGCTGCGCGC CGGCCAGACC GACGCGATCG ACATCTATTC CACCGATGCC
CGGATCCGCC GCGAACACCT GCGCGTGCTG GAGGACAGCG CGCACGTCTT CCCCCGCTAC
GATGCCGTGG TGCTCTACCG GCTCGACGTG CCGGCGCGGC ACGCGGCGCA ATGGCGGGCG
ATCATGGCGC TCGCCGGCCG CATCCATCGC GACGAGATGG TGGCGATGAA CGCCGCGGTC
GAACTGGAGG GCCAGCCCTT CGCGCGGGTC GCGGCGCGGT TCCTGGCCGG CCACGGCATG
CCTGCGGCGC GGGCGGAGGC ACCCACGCGT GCCTTCCTCG CGCAGCTGGG CGACGGCCTG
TGGCGCCTCA CGCGGCGGCA TCTGGCGCTG GTGGCGATCT CGACCGGGGC GGCCGCGCTG
ATCGGCGTGC CGCTCGGGCT GCTGGCGGCG CGGCGGCGGA TCCAGCAGCC GGTGCTGGCC
ATCGTGGGCG TGCTGCAGAC GATTCCGTCG CTGGCCCTGC TGGCGATGCT GATTCCGCTG
GTCGGGTCGA TCGGCGTGGT GCCGGCACTG ATCGCGCTCA CGCTGTATGC GCTGCTGCCG
ATCGTGCGCA ACACCATCGT CGGGCTGGAA CAGGTGCCCG ACGGCCTGCG CGATGCGGCG
CTGGCGCTGG GCTTCACGCC GGCGCAGCGC ACGCGCGTGG TCGACCTGCC GCTGGCGCTG
CCGGTCATCC TCGCGGGCAT CAAGACCGCC GCCGTGATCA GCGTCGGCAC CGCGACCATC
GCGGCCTTCA TCGGCGCGGG CGGATATGGC GAGCGCATTG CCACCGGCCT GGCCCTCAAC
GACAGCGCGA TCCTGCTGGC AGGCGCGATC CCGGCCGCCG TGCTGGCGCT GCTGGTGCAG
GGCGCCTTCG AAGCCGCCGA AGGATGGCTG CGGCGGCGCC GGCAGCCGCC CCCGCCGCGC
TAG
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| Protein sequence | MDTRRLIRNP FLRRLLAWMA LGWLACGTLA WAEAPLRIGS KRFTEAYVLG EVLTQAAAPH
GPAEHVPGLG NTAIVFAALR SGSIDLYPDY LGTIAAEILH LPPAQAANPD QAALLADVNR
ALAPLGLGAG VPLGFEDTYA LAMREADAER EGIRTLADLA AHPALRLGLS HEFLGRADGW
PALVRRYGLP QQPTGLDHGV AYDALRAGQT DAIDIYSTDA RIRREHLRVL EDSAHVFPRY
DAVVLYRLDV PARHAAQWRA IMALAGRIHR DEMVAMNAAV ELEGQPFARV AARFLAGHGM
PAARAEAPTR AFLAQLGDGL WRLTRRHLAL VAISTGAAAL IGVPLGLLAA RRRIQQPVLA
IVGVLQTIPS LALLAMLIPL VGSIGVVPAL IALTLYALLP IVRNTIVGLE QVPDGLRDAA
LALGFTPAQR TRVVDLPLAL PVILAGIKTA AVISVGTATI AAFIGAGGYG ERIATGLALN
DSAILLAGAI PAAVLALLVQ GAFEAAEGWL RRRRQPPPPR
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