| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0504 |
|---|
| Symbol | |
|---|
| ID | 7388498 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 425276 |
|---|
| End bp | 426190 |
|---|
| Gene Length | 915 bp |
|---|
| Protein Length | 304 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 643650144 |
|---|
| Product | ABC transporter substrate binding protein (proline/glycine/betaine) |
|---|
| Protein accession | YP_002548357 |
|---|
| Protein GI | 222147400 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1732] Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCATTCA GGATCATCAC CGCCGTCAGC GCTTTCGCGC TCATGACCCT TTCAGCCGCA
TCAGCGCTTG CTGCAGGCGA TCCGCTGGCG GCTCCGCCTA CTGAGAGATC CGATACCAAG
ACGATTATCA TCGGTTCTGC GGATTTCCCC GAGAGCCAGC TTCTGGCGAC ACTCTACGCC
AAGGCCTTGA CCGCTAAGGG AGTTGCGGTT GAAACAAAAT TGAATATCGG AAGCCGCGAG
GTCTATATGC CAGCCTTGCT CGACGGATCA ATCGATCTCC TGCCGGAATA TGCGGGCGCG
GCATTGAGCT ATCTCGACAA GAAAGCCACA GCCCATACGC CAGACGATGT GGCGGCGGCC
CTCAAGGCGG CCTTGCCGAA GGGCGTGTCG ATGCTGACAC CGTCAGCGGC GCAGGATTCG
GACGGCGTTG CGGTGACACG CGCGACGGCC GAGAAATACA AACTGAAGAC GATTGCCGAT
CTCGCCCCGG TTGCTTCCGA ATTCGTGCTT GGCGGTCCCC CGGAATGGAA GACGCGCAAG
GAAGGCATTA TCGGCCTGAA GGAGGTCTAT GGGCTGGAGT TCAAGTCGTT GAAGGCGCTT
GATGTCGGTG GCCCGCTGAC GTTGTCGGCA CTCGTCAATG GTCAGATACA GGCCGCAAAC
CTGTTTTCGA CCGATCCTGC CATCGCGACG AACGATCTGG TCATGCTGGA AGATGTCAAA
AACCTCTTTC CTGCCCAGAA TGTGGTTCCT GTGATCGCCA CTGCGAAAGT CAGTGAGACC
GTGGCAAAGA CGCTCGATGC AGTATCAGCC GCCCTGACCA CAAAGGATCT CGTTGTTATG
AACGGCCGTC TGGGCAATCA TGACAGTTTC GATGTGGTCG CCGGCGACTG GCTTGCGCAA
CACAAGCTGA ACTGA
|
|---|
| Protein sequence | MAFRIITAVS AFALMTLSAA SALAAGDPLA APPTERSDTK TIIIGSADFP ESQLLATLYA
KALTAKGVAV ETKLNIGSRE VYMPALLDGS IDLLPEYAGA ALSYLDKKAT AHTPDDVAAA
LKAALPKGVS MLTPSAAQDS DGVAVTRATA EKYKLKTIAD LAPVASEFVL GGPPEWKTRK
EGIIGLKEVY GLEFKSLKAL DVGGPLTLSA LVNGQIQAAN LFSTDPAIAT NDLVMLEDVK
NLFPAQNVVP VIATAKVSET VAKTLDAVSA ALTTKDLVVM NGRLGNHDSF DVVAGDWLAQ
HKLN
|
|---|
| |