| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1735 |
|---|
| Symbol | |
|---|
| ID | 7974477 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 1866939 |
|---|
| End bp | 1868468 |
|---|
| Gene Length | 1530 bp |
|---|
| Protein Length | 509 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644792334 |
|---|
| Product | Substrate-binding region of ABC-type glycine betaine transport system |
|---|
| Protein accession | YP_002943651 |
|---|
| Protein GI | 239814741 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1732] Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTGCGCG CCGCCTTGTT GTTCCTTGCC ATGGCCTGGC TCGGTGCCGC TGCATCGGCG
CAGCCCGGCG AGGGCACGCT GCGCGTCGGT TCCAAGCGCT TCACCGAGTC GTACATCCTG
GCCGAACTGC TCGCGCAGAC CGCGGCGCCC CACACCGCAT CGCCGCCGGT GGTGCGCCAG
GGCCTCGGCA ACACGGCCAT CGTGTACGAG GCGCTGCGTT CGGGTGCCAT CGATCTCTAT
GCCGAATACA CCGGCACCAT CGCGCTCGAA ATTCTCAAGG GTTCGCCAGC CGAAACGCGC
GAGGCCATGA ACGCGGCGCT GGCGCCCATG GGCCTGGGCG TGGCGATTCC GCTGGGCTTC
AACGACGGCT ATGCACTGGC CGTGCGGGCG GCCGATGCCG AGCGGCTCGG GCTGCGTACG
CTGAGCGATC TTGCAAAGCA TCCCGAACTC AAGCTCGGCC TGTCGAACGA ATTCCTCGGC
CGCGCCGACG GCTGGAAGGG CCTGGCCGCG CGCTACGGCT TCACCCAGGC GCCCACCGGC
CTCGACCATG GCCTGGCCTA CGAAGCCGTG GCCGCGAAGC AGATCGACGC GATCGACATC
TACACCACCG ACGCCAAGAT CGAGCATCTC GGCCTGCGCG TGCTCGAAGA CGACAGGAAA
TACTTTCCGC GCTACGACGC CGTGGTGCTC TACAGGCTCG ACCTGCCCAC GCGGCTGCCC
CAGGCCTGGG CCGCGCTGAA AACGCTCGAA GGCCGCATCG ACGAACACGC GATGATCGCG
ATGAATGCGC GCGCCGAACT CCAGAGCGTG CCCTTCGACA CCATTGCGCG CGACTTCCTG
GCCGGCGCAG GCCAGGGCGC AAAGACCCAG GAGCCCCGGC GCGGCTTCAG CGCCAAGCTG
TTCGGCCCCG ATCTCTGGCA GCTCGCGCGG CAGCACCTGG TGCTGGTCGC CGTATCGGTG
GGCGTGGCGA TCCTGATCGG CGTGCCGCTC GCGATCCTGG TGTTTCCGCA TGTGCGGCTG
CGCGCGCTGG TGCTCGGCTT CGCGAGCCTG CTGCAGACCG TGCCTTCGCT CGCGCTGCTG
GCCGTGCTGA TTTCCATGCT CGGTGCGATC GGCGCGCTGC CCGCGCTGAT CGCGCTCACG
CTCTATTCGC TGCTGCCGAT CATGCGCAAC ACCGTGACGG GCCTGGCCGA AGTGCCGAAC
GGCCTGCGCC TGGCCGGCAC CGCGCTGGGC ATGACGCCGC CGCAGAGCCT GCGGCTGGTG
CTGCTGCCGC TGGCACTGCC CACGCTGCTG GCGGGCGTGC GAACGGCCAC CGCCATTGCC
ATTGGCACCG CGACCATCGC GGCCTTCATC GGCGCAGGCG GATTCGGCGA GCGCATCGTC
ACGGGGCTGG CGCTCAACGA CCGCGAGCTG CTGCTGGCCG GCGCGCTGCC GGCCGCGGCG
CTGGCGTTGC TGAGCGAGGG GATCTTCGAG CTCGTGGAGA TGCTGATGCG CCGCCGGCGC
CGGGCGCCGC CGCCTTCGCT TCTCCCATGA
|
|---|
| Protein sequence | MLRAALLFLA MAWLGAAASA QPGEGTLRVG SKRFTESYIL AELLAQTAAP HTASPPVVRQ
GLGNTAIVYE ALRSGAIDLY AEYTGTIALE ILKGSPAETR EAMNAALAPM GLGVAIPLGF
NDGYALAVRA ADAERLGLRT LSDLAKHPEL KLGLSNEFLG RADGWKGLAA RYGFTQAPTG
LDHGLAYEAV AAKQIDAIDI YTTDAKIEHL GLRVLEDDRK YFPRYDAVVL YRLDLPTRLP
QAWAALKTLE GRIDEHAMIA MNARAELQSV PFDTIARDFL AGAGQGAKTQ EPRRGFSAKL
FGPDLWQLAR QHLVLVAVSV GVAILIGVPL AILVFPHVRL RALVLGFASL LQTVPSLALL
AVLISMLGAI GALPALIALT LYSLLPIMRN TVTGLAEVPN GLRLAGTALG MTPPQSLRLV
LLPLALPTLL AGVRTATAIA IGTATIAAFI GAGGFGERIV TGLALNDREL LLAGALPAAA
LALLSEGIFE LVEMLMRRRR RAPPPSLLP
|
|---|
| |