Gene Namu_1403 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNamu_1403 
Symbol 
ID8446999 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNakamurella multipartita DSM 44233 
KingdomBacteria 
Replicon accessionNC_013235 
Strand- 
Start bp1553707 
End bp1554681 
Gene Length975 bp 
Protein Length324 aa 
Translation table11 
GC content70% 
IMG OID645040534 
ProductSubstrate-binding region of ABC-type glycine betaine transport system 
Protein accessionYP_003200793 
Protein GI258651637 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1732] Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value0.619701 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.504767 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCATGC GCACCGGCCG CCGACGCGGC CTGTTCCGAA CCGCCGGCCT GCTGGCGGCC 
GGCCTGGCCG CCGCCCTGAC CATCTCGGCC TGCGGCGGCG GTTCGTCCAA CCCGCTGGAC 
ACCAGCACCT CGGCCGCGGC ATCCGGACCC GCGTCCGGAT CGGCGGCCGC CGGCGGCGGC 
AAGATCGTCG TCGGCTCGGC CAACTTCCCC GAGAGCGCGC TGCTGGCCAA CATCTACGCC 
GCGGCGTTGA CCAAGGCCGG CCTGGACGCC TCGACCAACC TGAACATCGG CAGCCGCGAG 
GTCTACATCA AGGCCATCCA GGACGGGTCG ATCGATCTGG TGCCCGAGTA CTCCGGGGTG 
CTGCTGCAGT ACTTCGATCC GACCGCCACC GCGGTCTCGG CCGACGACGT CTATGCGGCG 
CTGGTCAAGG CCACGCCGCA GGGCCTGGTC GTGCTGGAGA AGTCGGCGGC CGAGGACAAG 
GACGCGGTGG TGGTCACCAA GGCCACCGCG GAGGCCAACA ACCTCACGTC CATCGCCGAC 
CTCGCCCCGG TCGCCTCCAC GTTCATCCTG GGCGGACCGT CCGAGTGGGA GACCCGGCCC 
ACCGGCGTGC CCGGGCTCAA GGAGAAGTAC GGCCTGACCT TCAAGGAGTT CAAGGCGCTG 
GACGCGGGCG GACCGCTGAC CCTCAACGCG CTGCTCAGCG ATCAGGTTCA GGCGGGCAAC 
CTGTTCACCA CCGACCCGGC CATCCCGGCC AACGATCTGG TCGTGCTGGA GGATCCGAAG 
AATCTGTTCG CCGCGCAGAA CGTGCTGCCG TTGATCCGGT CGGACGCCAA CAACGCGCAG 
GTCACCGAGG CGCTCAACGC GGTGTCGGCC AAGCTGGACA CGGCCACGCT GACCGAGCTG 
CTGACCAAGG TCGCCGTGGA CAAGCAGGAC TCCGCGCAGG TCGCCCAGGA GTGGGTGGCC 
CAGAACCTGA GCTGA
 
Protein sequence
MTMRTGRRRG LFRTAGLLAA GLAAALTISA CGGGSSNPLD TSTSAAASGP ASGSAAAGGG 
KIVVGSANFP ESALLANIYA AALTKAGLDA STNLNIGSRE VYIKAIQDGS IDLVPEYSGV 
LLQYFDPTAT AVSADDVYAA LVKATPQGLV VLEKSAAEDK DAVVVTKATA EANNLTSIAD 
LAPVASTFIL GGPSEWETRP TGVPGLKEKY GLTFKEFKAL DAGGPLTLNA LLSDQVQAGN 
LFTTDPAIPA NDLVVLEDPK NLFAAQNVLP LIRSDANNAQ VTEALNAVSA KLDTATLTEL 
LTKVAVDKQD SAQVAQEWVA QNLS