| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_3337 |
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| Symbol | |
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| ID | 3911139 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | + |
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| Start bp | 3817274 |
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| End bp | 3818833 |
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| Gene Length | 1560 bp |
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| Protein Length | 519 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 637885240 |
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| Product | substrate-binding region of ABC-type glycine betaine transport system |
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| Protein accession | YP_486944 |
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| Protein GI | 86750448 |
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| COG category | [E] Amino acid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1174] ABC-type proline/glycine betaine transport systems, permease component
[COG1732] Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.917916 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.224892 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCTGT TCGGCGATCC GCGCTGGAAC GAGGCGCTGG CCAATCTGCC GGACACGCTC
GGCGCGCATG TCCGCGTCAG CCTCGCCGCG CTGGCGCTCG GCCTCGTCGT CAGCCTGCCG
CTGGCGATTG TTGCGCGACG CCGCCCGATC CTGCGCGGCG CCCTGCTCGG CTTCGCCGGC
ATCGTCCAGA CCATCCCCGG CCTCGCTCTA CTGGCGCTGT TCTATCCGCT GCTGCTGGCG
CTGGCGGCGT TGAGTCTCCG CGCCTTCGGC GTCGGCTTCT CGGCGTTCGG CTTCCTGCCC
GCGGTGCTGG CGCTGGCGCT GTATGCGATG CTGCCGGTGC TGCGCAACAC CATCACCGGG
CTCGACGGCG TCGATCCGGC GCTCGTCGAG GCGGCGCAGG GCGTCGGCAT GACGCCGCGG
CAGGTGTTGA CGATGGTCGA GGTACCGCTG GCGCTGCCGG TGATCATGGC CGGCATTCGC
ACAGCCGCCG TATGGGTGAT CGGCACCGCG ACGCTGTCCA CGCCCATTGG CCAGACCAGC
CTCGGCAACT ACATCTTCGC CGGGCTGCAG ACGCAGAACT GGGTGCTGGT GCTGTTCGGC
TGCGCCGCCG CCGCAGTGCT GGCGCTCGCG GTCGATCAAC TGCTGGCGCT GATCGAGAGC
GGCCTGCGGC TGCGCAGCCG CGTCCGCACC GCGCTCGGCG GCCTTGGCCT CGCCGCGCTG
CTGATCGCGA CACTGGCGCC GTCGCTGGCC GGCACGCGAT CGACCTACTT CGTCGGCGCC
AAGACCTTCA CCGAGCAATA TGTGCTCGCG GCCCTTCTCC AGCAGCGGCT CGACGCCGCC
GGGCTGTCGG CCACGACGCG CGCCGGCCTC GGCTCCAGCG TGATCTACGA CGCGCTGAGG
AGCGGCGACA TCGACGCCTA TGTCGACTAC TCCGGCACGC TGTGGGCCAA TCAGTTCAAG
CACCCCGGCA TCGCCGCGCG CGACCAGGTG CTGGCCGATC TGAAGCAGGA TCTCGCCAAG
GACGGCGTCA CCCTGCTCGG CGACCTCGGC TTCGCCAACG CCTATGCGCT GGCGATGCCG
CGCGCCAGGG CCGAGGCGCT CGGTATCCGC TCGATCGCCG ATCTCGCCGC GCGCGCGCCG
GCGATGACGA TCGCCGGCGA CTACGAGTTC TTCTCCCGCC CGGAATGGGC CAATCTGCGC
CGCACCTATG GGCTCACTTT CAAGGCCGAA CGGCAGATGC AGCCCGACTT CATGTACGCG
GCCGTCGCCA CCGGCGAGGT CGATCTGATC GCCGGCTATA CCTCGGACGG GCTGATCGCC
AAATACGATC TCGTCGTGCT GGACGATCCC AAGCAGGCGA TCCCGCCTTA CGACGCGGTG
CTGCTGATCT CACCAAAGCG CGCCGGCGAC GCGAAGCTAC GCGATGCGCT GACGCCGCTG
GTCGGCCGCA TCGATATCGG CGCGATGCGC GCCGCCAATC TGCGCGCCGC CTCGGGCGGC
GGCGACGGCA CGCCCGACGC GGTGGCGCGG GCGCTGTGGG ACGGCATCAA GGCGCGCTGA
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| Protein sequence | MSLFGDPRWN EALANLPDTL GAHVRVSLAA LALGLVVSLP LAIVARRRPI LRGALLGFAG
IVQTIPGLAL LALFYPLLLA LAALSLRAFG VGFSAFGFLP AVLALALYAM LPVLRNTITG
LDGVDPALVE AAQGVGMTPR QVLTMVEVPL ALPVIMAGIR TAAVWVIGTA TLSTPIGQTS
LGNYIFAGLQ TQNWVLVLFG CAAAAVLALA VDQLLALIES GLRLRSRVRT ALGGLGLAAL
LIATLAPSLA GTRSTYFVGA KTFTEQYVLA ALLQQRLDAA GLSATTRAGL GSSVIYDALR
SGDIDAYVDY SGTLWANQFK HPGIAARDQV LADLKQDLAK DGVTLLGDLG FANAYALAMP
RARAEALGIR SIADLAARAP AMTIAGDYEF FSRPEWANLR RTYGLTFKAE RQMQPDFMYA
AVATGEVDLI AGYTSDGLIA KYDLVVLDDP KQAIPPYDAV LLISPKRAGD AKLRDALTPL
VGRIDIGAMR AANLRAASGG GDGTPDAVAR ALWDGIKAR
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