| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noc_0540 |
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| Symbol | |
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| ID | 3706732 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrosococcus oceani ATCC 19707 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007484 |
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| Strand | + |
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| Start bp | 578235 |
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| End bp | 579740 |
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| Gene Length | 1506 bp |
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| Protein Length | 501 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 637737048 |
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| Product | ABC transporter inner membrane/substrate-binding proteins |
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| Protein accession | YP_342590 |
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| Protein GI | 77164065 |
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| COG category | [E] Amino acid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1174] ABC-type proline/glycine betaine transport systems, permease component
[COG1732] Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAAGGCC GCACAGTGAA TAAAGCAAGC CTTGCTTTGG CTTTGTGGCT GCTATTCTCG
GGATGCTTGG CCGATTCCGC GGTGATCGTT GGCTCCAAGA AGTTTACGGA ATCCATTCTT
TTGGGTGAGC TGGTAGTTCA GCAGATACGG AGTGCGGGCG TGAACGCGAT CCATCGCCGG
GAACTGGGGG GATCGCGGGT TCTTTGGAAC GCCTTGCTGA CCGGTGAAAT CGATATTTAT
CCTGAATATA CTGGCACGCT CTATTACGAA ATTTTTTCCC GGCAGGTGAC CGAAGAAGCC
GAACTGCGCC GCCTTTTAGT GGCCCAGGGA ATTGAGATGA GCCGTCCCTT GGGATTCAAT
AATACGTATG CTTTGGGAAT GAAAGAAGCG GTTGCCGAGC GGCTCAATAT TCGTAAGATT
TCAGATCTGG TTAGACATCC AGAGCTAGTG CTGGGATTTA GTAATGAGTT TATGGCCCGG
GCTGACGGAT GGCCGGGTCT GCGTACTCGC TATGGGTTGC CCCAACGCCA GGTCAGCGGA
TTGGATCATG ATCTCGCTTA CCGGGGACTA GCGCAGGGTT CCTTGCAGGT GATTGATCTC
TACTCGACCG ATGCTGAAAT TGATTATTAT GGATTGCGCG TACTAGAAGA TGATCGTCAT
TACTTTCCCG ACTATAAAGC CCTATTGCTT TACCGGCGTG ACTTGCTGAA ACAGGCGCCA
GAGGCAGTGA CTGCCTTACA TTCTTTGGAG GGGCGCCTTG ATTCGGCAAG CATGGCCGCC
ATGAATGCCC AGGTTAAGCT GGAGCGCGTC CCCGATTTCC AGGTAGCCGG AAATTTTCTG
GAACAAACTT TTGGCCATCG CCCGCAAGCC TCTCCGGTAA CCGCCTGGCA GCGTTTTTAC
CGCCATACCA AGGAGCACTT GGTTTTGGTC GGCATTTCCC TGACAAGCGC CATTGTTGTC
GCCATCCCGC TCGGAGTTAT CGCAGCCTAC CGGCCCCGGC TAGGGTCGAT TATCTTGAGT
ATAGCGGGGA TTATTCAAAC TATTCCCGCG CTGGCCTTGC TGGTTTTCAT GATTCCTCTC
CTTGGCATTG GCGGTCCGCC GGCGGTTGTG GCCTTATTCC TGTACAGTCT TTTACCCATC
CTGCGCAATA CCCATACCGG GTTGCATGAT ATTTCCCCTC AGCTTCGAGA ATCGGCAGTA
GCGCTGGGTC TTTCAACGGG GGCCAGGCTG CGTTTAGTGG AACTGCCCAT GGCCTCCCGC
GCTATTTTGG CGGGTATTAA AACCTCAGCG GTGATCAATG TGGGCACGGC TACCCTGGGT
GCTTTAATCG GCGCCGGGGG ATATGGGCAA CCTATATTGA CTGGAATTCG CTTGGATGAC
GTGAGTCTTA TTTTGGAAGG AGCCATTCCT GCCGCCGGAC TGGCCATGCT GGTGCAAGGG
CTGTTTGAGT GGGCGGATCG AGCCATAGTC CCTAAAGGGC TGCGGTTGGC AGAGCGGAAA
AGATAA
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| Protein sequence | MEGRTVNKAS LALALWLLFS GCLADSAVIV GSKKFTESIL LGELVVQQIR SAGVNAIHRR
ELGGSRVLWN ALLTGEIDIY PEYTGTLYYE IFSRQVTEEA ELRRLLVAQG IEMSRPLGFN
NTYALGMKEA VAERLNIRKI SDLVRHPELV LGFSNEFMAR ADGWPGLRTR YGLPQRQVSG
LDHDLAYRGL AQGSLQVIDL YSTDAEIDYY GLRVLEDDRH YFPDYKALLL YRRDLLKQAP
EAVTALHSLE GRLDSASMAA MNAQVKLERV PDFQVAGNFL EQTFGHRPQA SPVTAWQRFY
RHTKEHLVLV GISLTSAIVV AIPLGVIAAY RPRLGSIILS IAGIIQTIPA LALLVFMIPL
LGIGGPPAVV ALFLYSLLPI LRNTHTGLHD ISPQLRESAV ALGLSTGARL RLVELPMASR
AILAGIKTSA VINVGTATLG ALIGAGGYGQ PILTGIRLDD VSLILEGAIP AAGLAMLVQG
LFEWADRAIV PKGLRLAERK R
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