Gene Haur_0350 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHaur_0350 
Symbol 
ID5732260 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHerpetosiphon aurantiacus ATCC 23779 
KingdomBacteria 
Replicon accessionNC_009972 
Strand+ 
Start bp420701 
End bp421642 
Gene Length942 bp 
Protein Length313 aa 
Translation table11 
GC content50% 
IMG OID641277473 
Productsubstrate-binding region of ABC-type glycine betaine transport system 
Protein accessionYP_001543129 
Protein GI159896882 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1732] Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones3 
Plasmid unclonability p-value0.000721097 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGACGTT TCATCCAGCT AACCGTGTTG CTCACGCTCT TGATGACCAT TTTAGCCGCT 
TGTGGCGATG ATGCAGCCAG CAGCACGACA GCTCCCAGTA GCGACCCAAA TCCCGCCCCA 
AGTAGCAATC AAGTAATTCG GATTGCCTCG AAGAATTTTA CCGAACAGTT TATTGTGGGC 
GAAATGTATG CCCTCTTGTT GGAACAAGCA GGCTACAAAG TTGAGCGCAA AATTGGCTTA 
GGCGCAACCG ATGTAGCCCA AGCTGCCATG GAAAAAGGCG AGATCGATAT TTATCCTGAG 
TACACTGGCA CTGGCTTGTT GACTGTACTC AAATTGCCAA CCCAAACCGA TCCCAAAGCG 
GTCTATGAAA CGGTCAAAAA AGGCTATGCC GAGAAATATC AAATTGCATG GCTCGACCCT 
GCGCCAATGA ATAATACCCA AGCCTTGGCC ATGACCAAAG AAGGTGCTCA GAAATTTGGC 
ATCATCACAA TCTCCGACAT GGCCGCCAAA GCCGGCGAAC TGCGCATGAT CGGCCCACCC 
GAGTTCCAAG AACGAGAAGA TGGCTTGCCT GGCATTCAAG CCAAGTATGG CAACTTCGAA 
CTCAAGGAAT ATGTACCAGT CGATCCAGGC CTCAAATACA AGGGCTTGGT CGAAGGCAAT 
GCCGATGTGG TGGTGGCCTT TGGCACGGAC GGCGAAATTG CCAATTATGG CTTGGTCGTG 
CTCAAAGATG ATCGCAACAT GTTCCCGCCC TACCAAATCG CTCCGTTGGT GCGCCAAAGC 
GTTTTGGATG CTAACCCCAA ATTGGCTGAA TTGCTGAATG CCTTGGCTCC CAAACTTGAC 
GATGCGACCA TGCAACAGCT CAATTTTGAA GTCAGCGGCA ATAATCGCAA ATACGAAGAT 
GTGGCCAAAG AGTTCCTAAC CACCCAAGGT TTGTTGAAAT AG
 
Protein sequence
MRRFIQLTVL LTLLMTILAA CGDDAASSTT APSSDPNPAP SSNQVIRIAS KNFTEQFIVG 
EMYALLLEQA GYKVERKIGL GATDVAQAAM EKGEIDIYPE YTGTGLLTVL KLPTQTDPKA 
VYETVKKGYA EKYQIAWLDP APMNNTQALA MTKEGAQKFG IITISDMAAK AGELRMIGPP 
EFQEREDGLP GIQAKYGNFE LKEYVPVDPG LKYKGLVEGN ADVVVAFGTD GEIANYGLVV 
LKDDRNMFPP YQIAPLVRQS VLDANPKLAE LLNALAPKLD DATMQQLNFE VSGNNRKYED 
VAKEFLTTQG LLK