| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2529 |
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| Symbol | |
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| ID | 5540011 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 3262077 |
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| End bp | 3263027 |
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| Gene Length | 951 bp |
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| Protein Length | 316 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640894660 |
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| Product | substrate-binding region of ABC-type glycine betaine transport system |
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| Protein accession | YP_001432627 |
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| Protein GI | 156742498 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1732] Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.00436468 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGTGCGAT CTCTTCGGTT TTTTGTCGCG TTCACCACGC TGGTCGGTCT GGTTCTTGCT
GCATGCAGTG CACCCGCTCA AACCACACAA CCCACGGCTG TACCGCAACC CGCTCCCGCA
GATGCCACTC CGGTCCGCAT TGGCTCGAAG AACTTCACCG AAGCGATTCT GGTTGCCGAA
ATGTATGCGC TGGCGCTGGA AGATGCCGGC ATTCGCGTCG AGCGCAAGTT CAACCTCGGT
GCAACGCCAG TGGCGCACAC GGCGCTGGTG AATGGCGAAA TCGATCTGTA CCCGGAGTAC
ACGTCGACCG GTCTGCTCGA AGTGCTCAAG CAAGCGCCGA TTGCCGACGC CAGAGGCATT
CTGGAGGCGG TGCGCAAGGG GTACGAAGAG CAATTCCAGG TGACCTGGCT CGAACCATCG
CCATTCAACA ACACGAATGC GCTGGCAATG ACCCGGCAGC GCGCTGAAGA ACTGGGGATC
AGAACCTACT CCGATCTGGT AGCGCATTCT GGCGATCTGA AACTTGGCGG TCCGCCGGAG
TTTCCCGAGC GTGAGGACAC CAAAGGTTTG ATGGCTGCCT ATGGGTTCGA TCCGAAGTTT
ATCGAAGAGA ACTTCGTGCA ACTCGACACC GGCGCATTGC GCTACGAGGC GCTTACCAAA
GGTGACATCG ATGTGGTCGT CGCATTCGGC ACCGACGGGC AGATTAATGG GTTGGGTCTG
GCGCTGCTGG AGGACGATAA GAACTACTAC CCCATCTATC AGATTGCGCC GGTCATTCGC
CAGGATGCCC TGGCAGCCAA CCCACAGATT GCCGAGACGC TCAACCGGTT GGCGCCGCTC
CTGACGAATG ATGTCATGTC CGGTTTGAAC TGGCAGGTCG ATGGACCGGA GAAGAAGGAG
ATCGCCGACG TGGCGCGCAC CTTCCTGCAA CAACAGGGAT TTATCAAGTA G
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| Protein sequence | MVRSLRFFVA FTTLVGLVLA ACSAPAQTTQ PTAVPQPAPA DATPVRIGSK NFTEAILVAE
MYALALEDAG IRVERKFNLG ATPVAHTALV NGEIDLYPEY TSTGLLEVLK QAPIADARGI
LEAVRKGYEE QFQVTWLEPS PFNNTNALAM TRQRAEELGI RTYSDLVAHS GDLKLGGPPE
FPEREDTKGL MAAYGFDPKF IEENFVQLDT GALRYEALTK GDIDVVVAFG TDGQINGLGL
ALLEDDKNYY PIYQIAPVIR QDALAANPQI AETLNRLAPL LTNDVMSGLN WQVDGPEKKE
IADVARTFLQ QQGFIK
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