| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_0538 |
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| Symbol | |
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| ID | 4202883 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium perfringens ATCC 13124 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008261 |
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| Strand | + |
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| Start bp | 639643 |
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| End bp | 641196 |
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| Gene Length | 1554 bp |
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| Protein Length | 517 aa |
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| Translation table | 11 |
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| GC content | 29% |
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| IMG OID | 638081420 |
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| Product | glycine betaine/L-proline ABC transporter, permease/glycine betaine/L-proline-binding protein |
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| Protein accession | YP_694992 |
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| Protein GI | 110800299 |
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| COG category | [E] Amino acid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1174] ABC-type proline/glycine betaine transport systems, permease component
[COG1732] Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.863672 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAATAGTT TATTACAATA TGTAATTTCA CAGAAAACTC AAATATTAGA TTTATTAGTT
CAACATATAT ATTTAACAAT TACGGCTATA GGAATAGCTA TATTAATAGG AGTTCCTTTA
GGAATTCTTG TTTCAAGGGT TAAGTTTTTA AGAAAGCCTA TAATAGGATT TGTAAACTTA
GTACAAGCTG TGCCTTCTAT GGCCTTACTA GGATTGCTTA TTCCCATATT AGGAATAGGA
AGTACACCTG CAATCTTTAT GGTTGTAGTA TATTCATTGC TTCCAATAGT TAAAAATACT
TACACAGGAA TCTCTGGCAT AGACCCAGTA GTATTAGAAT CTGCTAAGGG AATTGGACTT
ACTAAGAACC AAAGTTTATT TAAGATACAA TTACCATTAG CATTGCCAAT AATAATGTCT
GGTATAAGAA TATCAGCAGT TACAGCCGTA GGGCTTATGA CTTTAGCAGC CTTTATTGGT
GCCGGTGGAC TTGGATACTT AGTATTCTCA GGAGTTCAAA CGGTAAATAA TAATATGATT
TTAGCAGGAG CTATACCAGC TTGTATTTTA GCCTTAATAG TTGACTTTAT TTTCGGAAAA
ATAGAGGTAG CTGTTACACC AAAGGGATTA AGTAATGATA ACAAAAAGAA AAATACTTTT
GTTCTTAAAA TAATAAGTGT AATAATGATA ATAGCTATTT TATTTATGGG AATTTCATCA
TTTATATCAA GTAAAAAAGA TAAAGTGGTT ATTGGATCAA AAAACTTTAC TGAGCAACTT
ATTTTAGGAA ATATGTATGC AGATTTAGTT CAGGATAAAA CAGATTTACA AGTTGAAAAA
AAGCTAAATC TAGGAGGAAC ATCAGTTGCC TTTGGAGCAC TTGAAAAAGG TGATGTTGAC
ATGTATGTTG ATTATACTGG AACATTACTT GTTAATGTTA TGAAAGAAAA TAATATTGAT
AATAGTGTAG ATTATTATAA TAGCATAAAA GAAAATATGA ACAAGGAACA TGGGTTAACA
GTAATGGAAC CCCTAGGTTT TAATAATACT TATAATATAG CTATATCAAA AGAATTAGCT
GATAAGTATA AGATAAATAC AATATCAGAT TTATCAAAGT ACAGTAATGA CTTTGTATTA
TCTCCAACTA TTGAGTTCCA AAATAGACAA GATGGTTTAG TTGGATTAAA GAATTACTAT
GGCATGGATT TCAAAAATGT TAAATCTTTA GATGGAAGTC TTAGATACTC AGCATTATCA
AATGGGGAAT CACAGGCTAT AGATGCTTTC TCAACAGATG GACTTCTTAA AAAGTTTGAT
TTAAAAACTT TAGAAGATGA TAAGAAATTC TTTGTAAATT ATAGTGCAGT ACCTATAGTT
AACAATAAGA CTTTAGAAAA ATATCCACAA TTAAAGGATG TTTTAAACTC TTTAAGTGGT
AAGATCAATG AAGAAAAAAT GATTGACTTA AACTATGAAG TAGATGTATT AGGTAAATCA
CCAGAAGAGG TTGCTAAAGC TTTCTTAATT AGAGAAGGTT TAATAGAACA ATAG
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| Protein sequence | MNSLLQYVIS QKTQILDLLV QHIYLTITAI GIAILIGVPL GILVSRVKFL RKPIIGFVNL
VQAVPSMALL GLLIPILGIG STPAIFMVVV YSLLPIVKNT YTGISGIDPV VLESAKGIGL
TKNQSLFKIQ LPLALPIIMS GIRISAVTAV GLMTLAAFIG AGGLGYLVFS GVQTVNNNMI
LAGAIPACIL ALIVDFIFGK IEVAVTPKGL SNDNKKKNTF VLKIISVIMI IAILFMGISS
FISSKKDKVV IGSKNFTEQL ILGNMYADLV QDKTDLQVEK KLNLGGTSVA FGALEKGDVD
MYVDYTGTLL VNVMKENNID NSVDYYNSIK ENMNKEHGLT VMEPLGFNNT YNIAISKELA
DKYKINTISD LSKYSNDFVL SPTIEFQNRQ DGLVGLKNYY GMDFKNVKSL DGSLRYSALS
NGESQAIDAF STDGLLKKFD LKTLEDDKKF FVNYSAVPIV NNKTLEKYPQ LKDVLNSLSG
KINEEKMIDL NYEVDVLGKS PEEVAKAFLI REGLIEQ
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