61 homologs were found in PanDaTox collection
for query gene Snas_1036 on replicon NC_013947
Organism: Stackebrandtia nassauensis DSM 44728



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_013947  Snas_1036  Substrate-binding region of ABC-type glycine betaine transport system  100 
 
 		 339 aa  674    Stackebrandtia nassauensis DSM 44728  Bacteria  normal  1  normal  0.179609 
 
 
-
 
NC_009953  Sare_4723  substrate-binding region of ABC-type glycine betaine transport system  47.92 
 
 		 378 aa  278  9e-74  Salinispora arenicola CNS-205  Bacteria  normal  1  decreased coverage  0.0000278675 
 
 
-
 
NC_014151  Cfla_1338  Substrate-binding region of ABC-type glycine betaine transport system  45.16 
 
 		 337 aa  270  2.9999999999999997e-71  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.591511  hitchhiker  0.000311431 
 
 
-
 
NC_009380  Strop_4288  substrate-binding region of ABC-type glycine betaine transport system  48.36 
 
 		 377 aa  262  4.999999999999999e-69  Salinispora tropica CNB-440  Bacteria  normal  1  normal  0.591163 
 
 
-
 
NC_012669  Bcav_2671  Substrate-binding region of ABC-type glycine betaine transport system  44.76 
 
 		 336 aa  259  6e-68  Beutenbergia cavernae DSM 12333  Bacteria  normal  1  normal  0.0862575 
 
 
-
 
NC_013757  Gobs_0626  Substrate-binding region of ABC-type glycine betaine transport system  46.92 
 
 		 337 aa  255  6e-67  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.205752  n/a   
 
 
-
 
NC_013521  Sked_37570  periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein)  42.12 
 
 		 333 aa  237  2e-61  Sanguibacter keddieii DSM 10542  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013530  Xcel_1078  Substrate-binding region of ABC-type glycine betaine transport system  40.31 
 
 		 341 aa  202  6e-51  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.594312  n/a   
 
 
-
 
NC_009921  Franean1_0156  substrate-binding region of ABC-type glycine betaine transport system  35.5 
 
 		 344 aa  120  3e-26  Frankia sp. EAN1pec  Bacteria  normal  1  normal  0.0633468 
 
 
-
 
NC_008699  Noca_0455  substrate-binding region of ABC-type glycine betaine transport system  35.32 
 
 		 318 aa  103  3e-21  Nocardioides sp. JS614  Bacteria  normal  1  n/a   
 
 
-
 
NC_013169  Ksed_26230  periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein)  34.83 
 
 		 300 aa  102  1e-20  Kytococcus sedentarius DSM 20547  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013510  Tcur_3633  Substrate-binding region of ABC-type glycine betaine transport system  35.58 
 
 		 303 aa  101  2e-20  Thermomonospora curvata DSM 43183  Bacteria  normal  0.669788  n/a   
 
 
-
 
NC_007963  Csal_1701  periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system-like protein  32.59 
 
 		 324 aa  100  3e-20  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.656408  n/a   
 
 
-
 
NC_011989  Avi_0504  ABC transporter substrate binding protein (proline/glycine/betaine)  32.34 
 
 		 304 aa  95.5  1e-18  Agrobacterium vitis S4  Bacteria  normal  1  n/a   
 
 
-
 
NC_009664  Krad_1293  Substrate-binding region of ABC-type glycine betaine transport system  34.65 
 
 		 311 aa  95.5  1e-18  Kineococcus radiotolerans SRS30216  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013235  Namu_1403  Substrate-binding region of ABC-type glycine betaine transport system  35.5 
 
 		 324 aa  94.4  3e-18  Nakamurella multipartita DSM 44233  Bacteria  normal  0.619701  normal  0.504767 
 
 
-
 
NC_008541  Arth_2839  substrate-binding region of ABC-type glycine betaine transport system  34.78 
 
 		 318 aa  92  1e-17  Arthrobacter sp. FB24  Bacteria  normal  0.0104087  n/a   
 
 
-
 
NC_013174  Jden_2261  Substrate-binding region of ABC-type glycine betaine transport system  31.25 
 
 		 306 aa  87.4  3e-16  Jonesia denitrificans DSM 20603  Bacteria  normal  0.989377  normal  0.378374 
 
 
-
 
NC_011886  Achl_2554  Substrate-binding region of ABC-type glycine betaine transport system  32.52 
 
 		 320 aa  87.4  3e-16  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.000000921458 
 
 
-
 
NC_014210  Ndas_0400  Substrate-binding region of ABC-type glycine betaine transport system  30.1 
 
 		 300 aa  87.4  3e-16  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013595  Sros_8178  ABC transporter substrate binding protein (proline/glycine/betaine)  33.5 
 
 		 304 aa  85.5  0.000000000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013421  Pecwa_4556  Substrate-binding region of ABC-type glycine betaine transport system  31.79 
 
 		 293 aa  85.9  0.000000000000001  Pectobacterium wasabiae WPP163  Bacteria  normal  1  n/a   
 
 
-
 
NC_008726  Mvan_5601  substrate-binding region of ABC-type glycine betaine transport system  29.56 
 
 		 316 aa  85.1  0.000000000000001  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009338  Mflv_1207  substrate-binding region of ABC-type glycine betaine transport system  32.2 
 
 		 316 aa  82.8  0.000000000000007  Mycobacterium gilvum PYR-GCK  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008146  Mmcs_4967  substrate-binding region of ABC-type glycine betaine transport system  28.57 
 
 		 314 aa  80.5  0.00000000000004  Mycobacterium sp. MCS  Bacteria  normal  1  n/a   
 
 
-
 
NC_008705  Mkms_5055  substrate-binding region of ABC-type glycine betaine transport system  28.57 
 
 		 314 aa  80.5  0.00000000000004  Mycobacterium sp. KMS  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009077  Mjls_5348  substrate-binding region of ABC-type glycine betaine transport system  28.57 
 
 		 314 aa  77.8  0.0000000000003  Mycobacterium sp. JLS  Bacteria  normal  0.684846  normal  1 
 
 
-
 
NC_013131  Caci_3084  Substrate-binding region of ABC-type glycine betaine transport system  33.49 
 
 		 302 aa  76.6  0.0000000000006  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.503055  normal  0.205604 
 
 
-
 
NC_013172  Bfae_30010  periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein)  30.2 
 
 		 315 aa  74.3  0.000000000003  Brachybacterium faecium DSM 4810  Bacteria  normal  0.107926  n/a   
 
 
-
 
NC_013093  Amir_6268  Substrate-binding region of ABC-type glycine betaine transport system  31.03 
 
 		 294 aa  72.4  0.00000000001  Actinosynnema mirum DSM 43827  Bacteria  normal  1  n/a   
 
 
-
 
NC_013739  Cwoe_3262  Substrate-binding region of ABC-type glycine betaine transport system  28.23 
 
 		 322 aa  70.1  0.00000000005  Conexibacter woesei DSM 14684  Bacteria  normal  0.310022  normal  0.0153041 
 
 
-
 
NC_009523  RoseRS_1816  substrate-binding region of ABC-type glycine betaine transport system  31.68 
 
 		 310 aa  69.3  0.00000000008  Roseiflexus sp. RS-1  Bacteria  normal  1  normal  0.0119683 
 
 
-
 
NC_013131  Caci_3081  Substrate-binding region of ABC-type glycine betaine transport system  29.38 
 
 		 304 aa  69.3  0.00000000009  Catenulispora acidiphila DSM 44928  Bacteria  normal  1  normal  0.0356905 
 
 
-
 
NC_008254  Meso_2977  substrate-binding region of ABC-type glycine betaine transport system  30.54 
 
 		 343 aa  66.2  0.0000000007  Chelativorans sp. BNC1  Bacteria  normal  0.0119882  n/a   
 
 
-
 
NC_009767  Rcas_2529  substrate-binding region of ABC-type glycine betaine transport system  31.19 
 
 		 316 aa  65.1  0.000000002  Roseiflexus castenholzii DSM 13941  Bacteria  normal  1  hitchhiker  0.00436468 
 
 
-
 
NC_009621  Smed_5103  substrate-binding region of ABC-type glycine betaine transport system  29.15 
 
 		 296 aa  64.3  0.000000003  Sinorhizobium medicae WSM419  Bacteria  normal  1  normal  0.257354 
 
 
-
 
NC_011884  Cyan7425_4275  Substrate-binding region of ABC-type glycine betaine transport system  27.45 
 
 		 304 aa  61.6  0.00000002  Cyanothece sp. PCC 7425  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009565  TBFG_13791  osmoprotectant (glycine betaine/carnitine/choline/L-proline) transport system substrate binding lipoprotein proX  26.96 
 
 		 315 aa  61.2  0.00000003  Mycobacterium tuberculosis F11  Bacteria  normal  1  normal  0.643874 
 
 
-
 
NC_009972  Haur_0350  substrate-binding region of ABC-type glycine betaine transport system  27.5 
 
 		 313 aa  59.3  0.00000008  Herpetosiphon aurantiacus ATCC 23779  Bacteria  hitchhiker  0.000721097  n/a   
 
 
-
 
NC_008786  Veis_2911  substrate-binding region of ABC-type glycine betaine transport system  28.82 
 
 		 301 aa  58.2  0.0000002  Verminephrobacter eiseniae EF01-2  Bacteria  normal  1  normal  0.107648 
 
 
-
 
NC_008148  Rxyl_0580  substrate-binding region of ABC-type glycine betaine transport system  27.8 
 
 		 321 aa  57.8  0.0000002  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  1  n/a   
 
 
-
 
NC_008688  Pden_4888  substrate-binding region of ABC-type glycine betaine transport system  27.14 
 
 		 294 aa  57  0.0000005  Paracoccus denitrificans PD1222  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007948  Bpro_1158  substrate-binding region of ABC-type glycine betaine transport system  28.51 
 
 		 293 aa  52.8  0.00001  Polaromonas sp. JS666  Bacteria  normal  0.590027  normal  1 
 
 
-
 
NC_008262  CPR_0522  glycine betaine/carnitine/choline ABC transporter, permease/substrate-binding protein  25.24 
 
 		 517 aa  52  0.00001  Clostridium perfringens SM101  Bacteria  normal  0.271995  n/a   
 
 
-
 
NC_008261  CPF_0538  glycine betaine/L-proline ABC transporter, permease/glycine betaine/L-proline-binding protein  25.62 
 
 		 517 aa  51.6  0.00002  Clostridium perfringens ATCC 13124  Bacteria  normal  0.863672  n/a   
 
 
-
 
NC_013440  Hoch_5205  Substrate-binding region of ABC-type glycine betaine transport system  28.57 
 
 		 537 aa  50.4  0.00004  Haliangium ochraceum DSM 14365  Bacteria  normal  0.057164  normal  1 
 
 
-
 
NC_008148  Rxyl_0982  substrate-binding region of ABC-type glycine betaine transport system  26.7 
 
 		 319 aa  50.1  0.00006  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  1  n/a   
 
 
-
 
NC_009727  CBUD_1923  glycine betaine transport system permease protein  26.63 
 
 		 526 aa  47.8  0.0003  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  1  n/a   
 
 
-
 
NC_010117  COXBURSA331_A0267  quaternary amine ABC transporter periplasmic substrate-binding protein  26.63 
 
 		 526 aa  47.8  0.0003  Coxiella burnetii RSA 331  Bacteria  normal  1  n/a   
 
 
-
 
NC_011899  Hore_18420  Substrate-binding region of ABC-type glycine betaine transport system  24.57 
 
 		 316 aa  47  0.0004  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.00000366323  n/a   
 
 
-
 
NC_013204  Elen_0084  Substrate-binding region of ABC-type glycine betaine transport system  26.09 
 
 		 528 aa  47  0.0005  Eggerthella lenta DSM 2243  Bacteria  normal  0.689632  normal  1 
 
 
-
 
NC_008531  LEUM_1017  ABC-type proline/glycine betaine transport systems, permease and substrate binding protein  29.81 
 
 		 508 aa  47  0.0005  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  unclonable  0.00355742  n/a   
 
 
-
 
NC_007963  Csal_2356  substrate-binding region of ABC-type glycine betaine transport system  28.46 
 
 		 294 aa  47  0.0005  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.427621  n/a   
 
 
-
 
NC_007963  Csal_2348  substrate-binding region of ABC-type glycine betaine transport system  27.41 
 
 		 298 aa  47  0.0005  Chromohalobacter salexigens DSM 3043  Bacteria  normal  1  n/a   
 
 
-
 
NC_013159  Svir_00660  periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein)  24.88 
 
 		 319 aa  46.6  0.0005  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.906565  normal  1 
 
 
-
 
NC_007963  Csal_2357  substrate-binding region of ABC-type glycine betaine transport system  25.57 
 
 		 300 aa  46.2  0.0008  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.0367531  n/a   
 
 
-
 
NC_013730  Slin_0317  binding-protein-dependent transport systems inner membrane component  23.4 
 
 		 519 aa  45.1  0.002  Spirosoma linguale DSM 74  Bacteria  normal  1  normal  0.417886 
 
 
-
 
NC_010320  Teth514_1203  substrate-binding region of ABC-type glycine betaine transport system  27.57 
 
 		 304 aa  43.9  0.004  Thermoanaerobacter sp. X514  Bacteria  normal  1  n/a   
 
 
-
 
NC_007347  Reut_A1451  binding-protein dependent transport system inner membrane protein  28.26 
 
 		 493 aa  43.5  0.005  Ralstonia eutropha JMP134  Bacteria  normal  1  n/a   
 
 
-
 
NC_007952  Bxe_B2994  glycine betaine/choline/proline ABC transporter periplasmic ligand-binding protein  32.91 
 
 		 298 aa  43.5  0.005  Burkholderia xenovorans LB400  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009513  Lreu_0184  substrate-binding region of ABC-type glycine betaine transport system  35.06 
 
 		 299 aa  42.7  0.009  Lactobacillus reuteri DSM 20016  Bacteria  normal  1  n/a   
 
 
-
 
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