Gene Rxyl_0982 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRxyl_0982 
Symbol 
ID4117213 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRubrobacter xylanophilus DSM 9941 
KingdomBacteria 
Replicon accessionNC_008148 
Strand- 
Start bp1020125 
End bp1021084 
Gene Length960 bp 
Protein Length319 aa 
Translation table11 
GC content69% 
IMG OID638035766 
Productsubstrate-binding region of ABC-type glycine betaine transport system 
Protein accessionYP_643760 
Protein GI108803823 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1732] Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAAGAGA GAGCCATACC GCGCGCCGCG GCCGGGCTTC TGGCGGCGCT CCTGGCGCTC 
GCGCTCGTCG CCTGCGGCAA CGTGGGCGAG AGCGGCGGCT CCGGCCCCGG CGCCGGGGAA 
GGGGGAGGCC CCGCGATCAC CGTGGGCTCC AAGAACTTCA CCGAGCAGTA CATCCTCGGC 
AACATGTACG CCCTGGCGCT CGAGGACGCC GGCTTCAAGG TGGAGCGGCG GCTGAACCTC 
GGCAGCGAGC AGATCGCCGA CAGGGCCCTC CAGAACGGGC AGATAGACCT CTATCCCGAG 
TACACCGGCA CCGCGCTGGC CGCGGTGCTC GACTACGAGG GCGACCCGGC GCAGCTGGAC 
ACCCCAGAGC AGACCTACCA GAGGGCGAAG GAGCTCTACG CCGGGCGCGA TCCGGCCGAC 
ACCATGCTCA GGCCCGCGCC CTTCAACAAC ACCTACGGCA TCTTCGTGCG CCGGGAGGCC 
GCCGAGCGCT ACGACCTGAG GACGCTCGAG GATCTCGCCG AGGCCTCCCC GAACCTGGTG 
TTCGTCTCCT TCTCCGAGTT CCAGGGGCGG GAGGACGGCT TCCCGAACAT GAAGGAGAAC 
TACCCGGCGC TCGACTTCAA GGACGTGGAG ATCGTCAACA GCATCGGGCT CCGCTACCAG 
GGGGTGCTGC AGGGCGAGGG GGACGTCGGG GTGGGCTTCA CCACCGACGG CCAGCTGGCC 
TCCGACCGGC TGGTGGTGCT CGAGGACCCC AAGAGCATCT GGCCCTTCTA CCAGCCCGCC 
CCCGTGGTGC GCACCGAGGT GCTCGAGAAG AACCCGAAGA TCCGGGAGGT CCTCAACGAG 
GTCTCGGCCA GCCTCGACGT GGAGACCATG CGAAGGCTCA ACGGCCGGGT GGACCTCCAG 
AAGGAGGACC CGGAGGACGT GGCCCGGGAG TATCTGGAGC GGGAGGGTCT GATAAACTAG
 
Protein sequence
MEERAIPRAA AGLLAALLAL ALVACGNVGE SGGSGPGAGE GGGPAITVGS KNFTEQYILG 
NMYALALEDA GFKVERRLNL GSEQIADRAL QNGQIDLYPE YTGTALAAVL DYEGDPAQLD 
TPEQTYQRAK ELYAGRDPAD TMLRPAPFNN TYGIFVRREA AERYDLRTLE DLAEASPNLV 
FVSFSEFQGR EDGFPNMKEN YPALDFKDVE IVNSIGLRYQ GVLQGEGDVG VGFTTDGQLA 
SDRLVVLEDP KSIWPFYQPA PVVRTEVLEK NPKIREVLNE VSASLDVETM RRLNGRVDLQ 
KEDPEDVARE YLEREGLIN