More than 300 homologs were found in PanDaTox collection
for query gene Shewmr4_1338 on replicon NC_008321
Organism: Shewanella sp. MR-4



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008321  Shewmr4_1338  glucose-1-phosphate thymidylyltransferase  100 
 
 
312 aa  640    Shewanella sp. MR-4  Bacteria  normal  0.182375  hitchhiker  0.00118285 
 
 
-
 
NC_008322  Shewmr7_1403  glucose-1-phosphate thymidylyltransferase  100 
 
 
312 aa  640    Shewanella sp. MR-7  Bacteria  normal  normal  0.0784803 
 
 
-
 
NC_008577  Shewana3_1391  glucose-1-phosphate thymidylyltransferase  97.76 
 
 
312 aa  624  1e-178  Shewanella sp. ANA-3  Bacteria  normal  hitchhiker  0.00918938 
 
 
-
 
NC_009997  Sbal195_3012  glucose-1-phosphate thymidylyltransferase  79.32 
 
 
295 aa  488  1e-137  Shewanella baltica OS195  Bacteria  normal  normal  0.635856 
 
 
-
 
NC_009052  Sbal_2866  glucose-1-phosphate thymidylyltransferase  80 
 
 
295 aa  490  1e-137  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_2955  glucose-1-phosphate thymidylyltransferase  73.26 
 
 
308 aa  430  1e-119  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_2758  glucose-1-phosphate thymidylyltransferase  68.92 
 
 
295 aa  422  1e-117  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.36633  n/a   
 
 
-
 
NC_010506  Swoo_1681  glucose-1-phosphate thymidylyltransferase  64.95 
 
 
292 aa  400  9.999999999999999e-111  Shewanella woodyi ATCC 51908  Bacteria  normal  0.180776  normal 
 
 
-
 
NC_010508  Bcenmc03_0843  glucose-1-phosphate thymidylyltransferase  61.72 
 
 
297 aa  382  1e-105  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.0237145 
 
 
-
 
NC_009831  Ssed_3013  glucose-1-phosphate thymidylyltransferase  64.04 
 
 
296 aa  382  1e-105  Shewanella sediminis HAW-EB3  Bacteria  normal  0.515318  hitchhiker  0.00164401 
 
 
-
 
NC_010084  Bmul_2597  glucose-1-phosphate thymidylyltransferase  62.41 
 
 
297 aa  381  1e-105  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_008060  Bcen_0390  glucose-1-phosphate thymidylyltransferase  61.38 
 
 
297 aa  380  1e-104  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008390  Bamb_0752  glucose-1-phosphate thymidylyltransferase  62.41 
 
 
297 aa  379  1e-104  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_0872  glucose-1-phosphate thymidylyltransferase  61.38 
 
 
297 aa  379  1e-104  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_010622  Bphy_2318  glucose-1-phosphate thymidylyltransferase  61.72 
 
 
297 aa  375  1e-103  Burkholderia phymatum STM815  Bacteria  normal  normal  0.233006 
 
 
-
 
NC_010501  PputW619_1395  glucose-1-phosphate thymidylyltransferase  59.8 
 
 
296 aa  375  1e-103  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_1277  glucose-1-phosphate thymidylyltransferase  61.72 
 
 
296 aa  377  1e-103  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_2677  glucose-1-phosphate thymidylyltransferase  60.48 
 
 
292 aa  377  1e-103  Rhodoferax ferrireducens T118  Bacteria  normal  0.475432  n/a   
 
 
-
 
NC_010551  BamMC406_0762  glucose-1-phosphate thymidylyltransferase  61.03 
 
 
297 aa  377  1e-103  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_0555  glucose-1-phosphate thymidylyltransferase  61.86 
 
 
296 aa  375  1e-103  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_01945  glucose-1-phosphate thymidylyltransferase  61.25 
 
 
292 aa  372  1e-102  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_1618  glucose-1-phosphate thymidylyltransferase  62.46 
 
 
293 aa  373  1e-102  Escherichia coli DH1  Bacteria  normal  0.0952229  n/a   
 
 
-
 
NC_007005  Psyr_0924  glucose-1-phosphate thymidylyltransferase, long form  60.14 
 
 
293 aa  371  1e-102  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.390731 
 
 
-
 
NC_007434  BURPS1710b_3162  glucose-1-phosphate thymidylyltransferase  57.98 
 
 
312 aa  371  1e-102  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_007510  Bcep18194_A3970  glucose-1-phosphate thymidylyltransferase  60.69 
 
 
297 aa  374  1e-102  Burkholderia sp. 383  Bacteria  hitchhiker  0.00629806  normal  0.592005 
 
 
-
 
NC_007651  BTH_I1470  glucose-1-phosphate thymidylyltransferase  60.34 
 
 
312 aa  373  1e-102  Burkholderia thailandensis E264  Bacteria  normal  0.759037  n/a   
 
 
-
 
NC_007948  Bpro_4018  glucose-1-phosphate thymidylyltransferase  60.48 
 
 
305 aa  373  1e-102  Polaromonas sp. JS666  Bacteria  normal  normal  0.520137 
 
 
-
 
NC_011138  MADE_00988  glucose-1-phosphate thymidylyltransferase  59.45 
 
 
293 aa  371  1e-102  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_2319  glucose-1-phosphate thymidylyltransferase  61.17 
 
 
293 aa  373  1e-102  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal  0.103885 
 
 
-
 
NC_010681  Bphyt_0879  glucose-1-phosphate thymidylyltransferase  60.69 
 
 
297 aa  371  1e-102  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_010468  EcolC_1603  glucose-1-phosphate thymidylyltransferase  60.69 
 
 
292 aa  372  1e-102  Escherichia coli ATCC 8739  Bacteria  normal  0.982513  normal 
 
 
-
 
NC_010658  SbBS512_E1194  glucose-1-phosphate thymidylyltransferase  61.59 
 
 
292 aa  371  1e-101  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_3103  glucose-1-phosphate thymidylyltransferase  60.69 
 
 
297 aa  370  1e-101  Burkholderia pseudomallei 668  Bacteria  normal  0.0791129  n/a   
 
 
-
 
NC_009801  EcE24377A_2330  glucose-1-phosphate thymidylyltransferase  61.03 
 
 
292 aa  371  1e-101  Escherichia coli E24377A  Bacteria  normal  0.0550352  n/a   
 
 
-
 
NC_006348  BMA1989  glucose-1-phosphate thymidylyltransferase  60.69 
 
 
297 aa  371  1e-101  Burkholderia mallei ATCC 23344  Bacteria  normal  0.112346  n/a   
 
 
-
 
NC_007298  Daro_1238  glucose-1-phosphate thymidylyltransferase  60.27 
 
 
296 aa  369  1e-101  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.981269 
 
 
-
 
NC_008782  Ajs_0539  glucose-1-phosphate thymidylyltransferase  59.52 
 
 
294 aa  368  1e-101  Acidovorax sp. JS42  Bacteria  normal  0.911631  normal  0.057049 
 
 
-
 
NC_007347  Reut_A0714  glucose-1-phosphate thymidylyltransferase  59.04 
 
 
295 aa  369  1e-101  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_5902  glucose-1-phosphate thymidylyltransferase  61.51 
 
 
293 aa  370  1e-101  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_007604  Synpcc7942_2101  glucose-1-phosphate thymidylyltransferase  61.11 
 
 
294 aa  369  1e-101  Synechococcus elongatus PCC 7942  Bacteria  normal  0.338319  normal 
 
 
-
 
NC_008785  BMASAVP1_A0924  glucose-1-phosphate thymidylyltransferase  60.69 
 
 
297 aa  370  1e-101  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_3140  glucose-1-phosphate thymidylyltransferase  60.69 
 
 
297 aa  370  1e-101  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_007952  Bxe_B1715  glucose-1-phosphate thymidylyltransferase  61.03 
 
 
297 aa  370  1e-101  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.703429 
 
 
-
 
NC_009080  BMA10247_1851  glucose-1-phosphate thymidylyltransferase  60.69 
 
 
297 aa  370  1e-101  Burkholderia mallei NCTC 10247  Bacteria  normal  0.530858  n/a   
 
 
-
 
NC_013173  Dbac_2558  glucose-1-phosphate thymidylyltransferase  58.9 
 
 
295 aa  369  1e-101  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A2754  glucose-1-phosphate thymidylyltransferase  60.69 
 
 
297 aa  370  1e-101  Burkholderia mallei NCTC 10229  Bacteria  normal  0.119435  n/a   
 
 
-
 
NC_011080  SNSL254_A2277  glucose-1-phosphate thymidylyltransferase  60.14 
 
 
294 aa  368  1e-101  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  hitchhiker  0.000000187637 
 
 
-
 
NC_003295  RSc0684  glucose-1-phosphate thymidylyltransferase protein  59.45 
 
 
292 aa  367  1e-100  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_011083  SeHA_C2321  glucose-1-phosphate thymidylyltransferase  59.79 
 
 
294 aa  367  1e-100  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  decreased coverage  0.00736153 
 
 
-
 
NC_011094  SeSA_A2328  glucose-1-phosphate thymidylyltransferase  59.79 
 
 
294 aa  366  1e-100  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal  0.196545 
 
 
-
 
NC_007973  Rmet_2733  glucose-1-phosphate thymidylyltransferase  58.42 
 
 
292 aa  366  1e-100  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A0626  glucose-1-phosphate thymidylyltransferase  59.93 
 
 
294 aa  367  1e-100  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.353924 
 
 
-
 
NC_010625  Bphy_6726  glucose-1-phosphate thymidylyltransferase  59.66 
 
 
317 aa  364  1e-100  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_68200  glucose-1-phosphate thymidylyltransferase  60.48 
 
 
293 aa  367  1e-100  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.0399407 
 
 
-
 
NC_009436  Ent638_2652  glucose-1-phosphate thymidylyltransferase  61.05 
 
 
291 aa  365  1e-100  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B2220  glucose-1-phosphate thymidylyltransferase  59.79 
 
 
294 aa  365  1e-100  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.281714  n/a   
 
 
-
 
NC_011205  SeD_A2435  glucose-1-phosphate thymidylyltransferase  59.45 
 
 
294 aa  364  1e-99  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  hitchhiker  0.0000704371 
 
 
-
 
NC_011206  Lferr_2893  glucose-1-phosphate thymidylyltransferase  60.42 
 
 
294 aa  363  2e-99  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal  0.413887 
 
 
-
 
NC_007516  Syncc9605_2032  glucose-1-phosphate thymidylyltransferase  60.2 
 
 
312 aa  363  2e-99  Synechococcus sp. CC9605  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_15940  glucose-1-phosphate thymidylyltransferase  60.48 
 
 
293 aa  363  2e-99  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_007947  Mfla_2009  glucose-1-phosphate thymidylyltransferase  58.9 
 
 
292 aa  363  2e-99  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A3726  glucose-1-phosphate thymidylyltransferase  60 
 
 
297 aa  363  2e-99  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_011761  AFE_3295  glucose-1-phosphate thymidylyltransferase  60.42 
 
 
294 aa  363  2e-99  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  unclonable  0.00238421  n/a   
 
 
-
 
NC_010524  Lcho_0621  glucose-1-phosphate thymidylyltransferase  59.11 
 
 
293 aa  363  2e-99  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.252794 
 
 
-
 
NC_007492  Pfl01_4056  glucose-1-phosphate thymidylyltransferase  59.59 
 
 
296 aa  362  3e-99  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.340468 
 
 
-
 
NC_007404  Tbd_1779  glucose-1-phosphate thymidylyltransferase  59.11 
 
 
293 aa  362  4e-99  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.149846  normal 
 
 
-
 
NC_007778  RPB_1565  glucose-1-phosphate thymidylyltransferase  61.03 
 
 
292 aa  362  4e-99  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.995779 
 
 
-
 
NC_008554  Sfum_2263  glucose-1-phosphate thymidylyltransferase  60.42 
 
 
305 aa  362  5.0000000000000005e-99  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A3801  glucose-1-phosphate thymidylyltransferase  59.45 
 
 
292 aa  362  6e-99  Burkholderia xenovorans LB400  Bacteria  normal  0.636815  normal 
 
 
-
 
NC_008700  Sama_2240  glucose-1-phosphate thymidylyltransferase  57.86 
 
 
305 aa  360  1e-98  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.572666 
 
 
-
 
NC_010814  Glov_0478  glucose-1-phosphate thymidylyltransferase  60.48 
 
 
293 aa  360  2e-98  Geobacter lovleyi SZ  Bacteria  normal  0.543511  n/a   
 
 
-
 
NC_010682  Rpic_0639  glucose-1-phosphate thymidylyltransferase  60 
 
 
294 aa  359  4e-98  Ralstonia pickettii 12J  Bacteria  normal  normal  0.477683 
 
 
-
 
NC_008576  Mmc1_1406  glucose-1-phosphate thymidylyltransferase  60.64 
 
 
290 aa  359  4e-98  Magnetococcus sp. MC-1  Bacteria  normal  0.0680028  normal 
 
 
-
 
NC_004578  PSPTO_1079  glucose-1-phosphate thymidylyltransferase  59.45 
 
 
296 aa  358  5e-98  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.857116  n/a   
 
 
-
 
NC_002947  PP_1783  glucose-1-phosphate thymidylyltransferase  60.48 
 
 
293 aa  358  7e-98  Pseudomonas putida KT2440  Bacteria  normal  hitchhiker  0.00712451 
 
 
-
 
NC_008786  Veis_0696  glucose-1-phosphate thymidylyltransferase  58.16 
 
 
294 aa  358  7e-98  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.53714  normal 
 
 
-
 
NC_011662  Tmz1t_3810  glucose-1-phosphate thymidylyltransferase  59.72 
 
 
292 aa  357  9.999999999999999e-98  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_1382  glucose-1-phosphate thymidylyltransferase  59.11 
 
 
293 aa  357  9.999999999999999e-98  Pseudomonas putida GB-1  Bacteria  normal  hitchhiker  0.000585484 
 
 
-
 
NC_010512  Bcenmc03_6247  glucose-1-phosphate thymidylyltransferase  58.28 
 
 
298 aa  357  9.999999999999999e-98  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.0385422  normal  0.992107 
 
 
-
 
NC_008544  Bcen2424_6649  glucose-1-phosphate thymidylyltransferase  58.28 
 
 
298 aa  357  9.999999999999999e-98  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_007204  Psyc_1214  glucose-1-phosphate thymidylyltransferase  60.28 
 
 
296 aa  357  1.9999999999999998e-97  Psychrobacter arcticus 273-4  Bacteria  normal  0.942362  decreased coverage  0.00289209 
 
 
-
 
NC_011901  Tgr7_2342  glucose-1-phosphate thymidylyltransferase  58.97 
 
 
292 aa  356  1.9999999999999998e-97  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_3121  glucose-1-phosphate thymidylyltransferase  59.66 
 
 
293 aa  356  2.9999999999999997e-97  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_008391  Bamb_3386  glucose-1-phosphate thymidylyltransferase  57.93 
 
 
298 aa  356  2.9999999999999997e-97  Burkholderia ambifaria AMMD  Bacteria  normal  0.718729  normal 
 
 
-
 
NC_007760  Adeh_4290  glucose-1-phosphate thymidylyltransferase  59.18 
 
 
294 aa  355  5.999999999999999e-97  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_3933  glucose-1-phosphate thymidylyltransferase  59.23 
 
 
296 aa  353  1e-96  Pseudomonas putida F1  Bacteria  normal  0.527502  normal  0.192647 
 
 
-
 
NC_008752  Aave_4164  glucose-1-phosphate thymidylyltransferase  60.21 
 
 
291 aa  354  1e-96  Acidovorax citrulli AAC00-1  Bacteria  normal  0.375509  normal  0.0599581 
 
 
-
 
NC_007958  RPD_1574  glucose-1-phosphate thymidylyltransferase  59.52 
 
 
292 aa  353  2.9999999999999997e-96  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.446194 
 
 
-
 
NC_012791  Vapar_0754  glucose-1-phosphate thymidylyltransferase  57.91 
 
 
299 aa  352  4e-96  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_2131  glucose-1-phosphate thymidylyltransferase  58.28 
 
 
297 aa  352  4e-96  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_4445  glucose-1-phosphate thymidylyltransferase  59.52 
 
 
294 aa  352  5e-96  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_0123  glucose-1-phosphate thymidylyltransferase  60.92 
 
 
291 aa  352  5.9999999999999994e-96  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007484  Noc_0774  glucose-1-phosphate thymidylyltransferase, long form  57.88 
 
 
292 aa  351  8e-96  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_01934  hypothetical protein  62.08 
 
 
270 aa  351  8e-96  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009379  Pnuc_0255  glucose-1-phosphate thymidylyltransferase  57.29 
 
 
309 aa  351  8.999999999999999e-96  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  0.201113  n/a   
 
 
-
 
NC_007513  Syncc9902_0637  glucose-1-phosphate thymidylyltransferase, long form  57.82 
 
 
310 aa  351  1e-95  Synechococcus sp. CC9902  Bacteria  normal  0.210198  n/a   
 
 
-
 
NC_008740  Maqu_2629  glucose-1-phosphate thymidylyltransferase  59.03 
 
 
298 aa  350  1e-95  Marinobacter aquaeolei VT8  Bacteria  normal  0.357597  n/a   
 
 
-
 
NC_007796  Mhun_3075  glucose-1-phosphate thymidylyltransferase  58.8 
 
 
293 aa  350  2e-95  Methanospirillum hungatei JF-1  Archaea  normal  0.589168  normal  0.11788 
 
 
-
 
NC_007969  Pcryo_0625  glucose-1-phosphate thymidylyltransferase  59.03 
 
 
290 aa  350  2e-95  Psychrobacter cryohalolentis K5  Bacteria  normal  normal  0.150141 
 
 
-
 
NC_010717  PXO_03170  glucose-1-phosphate thymidylyltransferase  59.3 
 
 
295 aa  350  2e-95  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
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