Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_1079 |
Symbol | rfbA |
ID | 1182714 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 1183678 |
End bp | 1184568 |
Gene Length | 891 bp |
Protein Length | 296 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 637392457 |
Product | glucose-1-phosphate thymidylyltransferase |
Protein accession | NP_790913 |
Protein GI | 28868294 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1209] dTDP-glucose pyrophosphorylase |
TIGRFAM ID | [TIGR01207] glucose-1-phosphate thymidylyltransferase, short form |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.857116 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCACCA TTAATCGTAA AGGCATCATC CTGGCCGGCG GATCGGGCAC TCGCCTGCAC CCGCTTACCC TTGGCGTATC CAAGCAGATG CTGCCTATCT ACGACAAGCC GATGATTTTC TACCCTCTGT CGGTGCTGAT GCTGGCGGGC ATGCGTGAAG TCCTGATCAT CTCTACGCCA GAAGACTTGC CAAGCTTTCG CAAGCTGCTG GGCGACGGCA GTCAGTACGG CATTGAACTC ACTTATGCCG AACAACCTAC GCCCGATGGC CTGGCACAAG CGTTCATCAT TGGCGAAGAG TTCATCGGCG AAGACCCTTG CTGCCTGATT CTGGGCGACA ACATCTTTTA CGGTCAGCAC TTCTCCGACA ACCTGCGCTC CGCCAGTCAG CAGACTGAAG GCGCCACGGT TTTTGGCTAC CACGTCTCCG ATCCGGAGCG CTTTGGTGTT GTCGAGTTCG ACGAAACCGG CCGTGCCTTG AGCATCGAAG AAAAGCCTGC CGCACCGAAA TCGAGCTACG CGGTAACCGG GCTGTACTTC TACGACAATC AGGTGGTCGA AATCGCGAAG AGCATCAAAC CCTCTGAGCG TGGCGAACTG GAAATCACCG ACGTGAACCG TGCGTACCTC GAGCAGAAGA GTCTGACCGT AGAAATTCTC GGTCGCGGCT TTGCATGGCT CGACACAGGT ACTCATGAGT CGCTGCTGGA AGCGAGCCAT TTTGTGCACA CCATTGAGCA GCGTCAGGGC TGGAAAGTAG CTTGCCTGGA AGAGATCGCC TACACCAACG GCTGGATCAC TGCCTCGCAA CTGGGTGAAC AAGCTCAGAA ACTGAAGAAA ACCGGCTACG GGCAGTATCT GCAGAAGCTG CTCGATCTGG GCTCGTTCTA A
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Protein sequence | MTTINRKGII LAGGSGTRLH PLTLGVSKQM LPIYDKPMIF YPLSVLMLAG MREVLIISTP EDLPSFRKLL GDGSQYGIEL TYAEQPTPDG LAQAFIIGEE FIGEDPCCLI LGDNIFYGQH FSDNLRSASQ QTEGATVFGY HVSDPERFGV VEFDETGRAL SIEEKPAAPK SSYAVTGLYF YDNQVVEIAK SIKPSERGEL EITDVNRAYL EQKSLTVEIL GRGFAWLDTG THESLLEASH FVHTIEQRQG WKVACLEEIA YTNGWITASQ LGEQAQKLKK TGYGQYLQKL LDLGSF
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