| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_1783 |
|---|
| Symbol | rmlA |
|---|
| ID | 1043324 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | - |
|---|
| Start bp | 1996584 |
|---|
| End bp | 1997465 |
|---|
| Gene Length | 882 bp |
|---|
| Protein Length | 293 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 637145186 |
|---|
| Product | glucose-1-phosphate thymidylyltransferase |
|---|
| Protein accession | NP_743939 |
|---|
| Protein GI | 26988514 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1209] dTDP-glucose pyrophosphorylase |
|---|
| TIGRFAM ID | [TIGR01207] glucose-1-phosphate thymidylyltransferase, short form |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.00712451 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCTCGTA AAGGAATTAT TCTGGCCGGC GGTTCGGGTA CACGCCTGCA TCCGGCCACA
CTTTCGGTTT CGAAGCAGCT GCTGCCGGTG TATGACAAAC CGATGATCTA CTACCCGCTG
AGCACCCTGC TGCTCGCTGG TATCCGGGAC ATCCTGATCA TTTCCACCCC GCAGGACACC
CCGCGCTTCG AACAGCTGCT GGGCGATGGC AGCCAGTGGG GCCTGAACCT GTCATACGCA
ATACAACCAA GCCCGGATGG CTTGGCGCAA GCGTTCACCA TCGGCGCTGA CTTCATCGGT
AACGACCCTT CTGCGTTGGT TCTCGGTGAC AATATTTTCT ACGGCCATGA CTTCCAGGCA
CTGCTATTGA ACGCAGATAA ACGTGAATCC GGTGCTTCAG TATTCGCTTA TCATGTTCAT
GACCCAGAAC GCTATGGCGT AGCGGAGTTT GACGATAGCG GTCGCGTATT GTCGCTGGAA
GAAAAACCGG CAGTTCCAAA GTCTAGCTAT GCGGTCACCG GCCTGTATTT CTATGACAAT
CAGGTAGTCA ATCTGGCTCG CGAGCTGAAG CCTTCCCCAC GTGGCGAGCT GGAAATCACC
GACCTCAACA ACCTTTACTT GCAGCAGCAG CAGTTGCAGG TCGAAATCAT GGGCCGTGGC
TATGCGTGGC TCGACACCGG CACGCACGAC AGTCTGCTGG AGGCTAGCCA GTACATCGCA
ACCATGGAGC GCCGTCAGGG CTTGAAAGTC GCCTGCCCTG AGGAAATTTG CTACCGCGCT
GGCTGGATCA ACGCTGAGCA ACTCGAGTGC CTGGCTCAAC CACTGCTGAA AAACGGTTAT
GGCAAGTATC TGCAGAACTT GCTGAAAGAG AAGGTGTTCT GA
|
|---|
| Protein sequence | MARKGIILAG GSGTRLHPAT LSVSKQLLPV YDKPMIYYPL STLLLAGIRD ILIISTPQDT
PRFEQLLGDG SQWGLNLSYA IQPSPDGLAQ AFTIGADFIG NDPSALVLGD NIFYGHDFQA
LLLNADKRES GASVFAYHVH DPERYGVAEF DDSGRVLSLE EKPAVPKSSY AVTGLYFYDN
QVVNLARELK PSPRGELEIT DLNNLYLQQQ QLQVEIMGRG YAWLDTGTHD SLLEASQYIA
TMERRQGLKV ACPEEICYRA GWINAEQLEC LAQPLLKNGY GKYLQNLLKE KVF
|
|---|
| |