Gene Vapar_0754 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_0754 
Symbol 
ID7971806 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp825111 
End bp826010 
Gene Length900 bp 
Protein Length299 aa 
Translation table11 
GC content63% 
IMG OID644791352 
Productglucose-1-phosphate thymidylyltransferase 
Protein accessionYP_002942673 
Protein GI239813763 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1209] dTDP-glucose pyrophosphorylase 
TIGRFAM ID[TIGR01207] glucose-1-phosphate thymidylyltransferase, short form 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCACGA AGACCACGCA ACGCAAAGGC ATCATCCTGG CCGGCGGCTC CGGCACCCGG 
CTGCACCCCG CCACCCTCGC GCTCAGCAAG CAGCTGCTGC CGGTGTACGA CAAGCCGATG
ATCTACTACC CGCTCAGCAC GCTCATGCTG GGCGGCATGC GCGACATCCT GATCATCAGC
ACGCCGCAGG ACACGCCGCG CTTCCAGCAA CTGCTGGGCG ATGGCAGCCA GTGGGGCATC
AACCTGCAGT ACGCGGTGCA GCCCAGCCCT GACGGCCTCG CTCAGGCCTT CATCATCGGC
GACAAATTCG TTGGAAACGA TCCGAGCGCG CTGGTGCTGG GCGACAACAT CTTCTACGGC
CACGACTTCG CGCATTTGCT TGAAGGCGCG AATGCGAAGA CCGAGGGCGC GACCGTGTTT
GCGTACCACG TGCACGATCC TGAGCGCTAT GGCGTCGTGG CCTTCGATGC CAAGGGCAAA
GCGAGCAGCA TCGAAGAGAA GCCGCTGAAG CCGAAGAGCA GCTACGCCGT GACCGGCCTG
TACTTCTACG ACAACCAGGT CGTCGACATC GCCAAGGCCG TGAAGCCCAG CGCGCGCGGC
GAACTGGAGA TCACGGCGGT CAACCAAGCC TATCTCGATC TGGACCAGCT CAGCGTGCAG
ATCATGCAGC GCGGCTATGC CTGGCTGGAC ACCGGTACGC ACGAGAGCCT GCTGGAAGCC
GGCCAGTTCA TCGCCACGCT GGAGCACCGG CAGGGCCTGA AGATCGCCTG CCCCGAAGAG
ATTGCGTGGC GCAATGGATT CATCGATCGC GAGCAATTGG CAAAGCTTGC CGTGCCGCTG
CAAAAGAACG GCTACGGCAA ATATCTGAAC CATTTGCTGG CGGAGGAGGT GCGCTCGTGA
 
Protein sequence
MTTKTTQRKG IILAGGSGTR LHPATLALSK QLLPVYDKPM IYYPLSTLML GGMRDILIIS 
TPQDTPRFQQ LLGDGSQWGI NLQYAVQPSP DGLAQAFIIG DKFVGNDPSA LVLGDNIFYG
HDFAHLLEGA NAKTEGATVF AYHVHDPERY GVVAFDAKGK ASSIEEKPLK PKSSYAVTGL
YFYDNQVVDI AKAVKPSARG ELEITAVNQA YLDLDQLSVQ IMQRGYAWLD TGTHESLLEA
GQFIATLEHR QGLKIACPEE IAWRNGFIDR EQLAKLAVPL QKNGYGKYLN HLLAEEVRS