| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3013 |
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| Symbol | |
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| ID | 5611467 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3644322 |
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| End bp | 3645212 |
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| Gene Length | 891 bp |
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| Protein Length | 296 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 640933950 |
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| Product | glucose-1-phosphate thymidylyltransferase |
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| Protein accession | YP_001474745 |
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| Protein GI | 157376145 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1209] dTDP-glucose pyrophosphorylase |
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| TIGRFAM ID | [TIGR01207] glucose-1-phosphate thymidylyltransferase, short form
[TIGR01208] glucose-1-phosphate thymidylylransferase, long form |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.515318 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.00164401 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACAATAC AACGTAAAGG GATTATCTTA GCCGGAGGCT CTGGCACTCG TCTTTACCCA
TTAACTAAAG TGGTGAGTAA GCAGTTAATG CCTGTCTATG ATAAGCCAAT GATCTATTAT
CCGATCTCAA ATTTAATGGT GGCAGGAATT AAAGAGATCC TGATTATCTC TACACCTGAA
GAGTTACCTC GCTTTAAAGA TTTATTGGGT GATGGCTCGG CGTGGGGTGT TTCTTTTGAG
TACGTAGAGC AACCAAGCCC AGATGGCCTA GCACAAGCCT TTATTTTAGC AGAAGAGTTT
TTAGCAGGGG CACCTGCAGC CCTGATTCTA GGTGATAACC TCTTTTATGG CCATGATTTA
CCTAAATCAT TAAAAAATGC AAACGCTCAA GAGAGTGGAG CAACCGTGTT TGGCTACCAT
GTGTCAAATC CATCCTCCTA TGGCGTTGTC GAGCTTGATA AAGAAGAAGG CACGGCGATT
TCAATTGAAG AAAAACCCGT AAAGCCTAAA TCAAATTATG CCGTAGCAGG TTTGTATTTT
TTTGATAGTA AAGTGGTGGA GTTTGCAAAA AATGTTCAGC CATCAGAACG TGGTGAGTTA
GAAATTACCG ATGTAATTGA ACAGTATTTA GAAGCAAACA CCTTAAAAGT TGAGCGCATG
GGGCGTGGTA CTGCGTGGCT AGACACTGGC ACTTTAGATG ATTTGTTAGA TGCTGCAGTA
TTCATCCGTG CAATCGAAAA GCGTCAAGGT TTAAAGATCA GTTGCCCAGA AGAGATAGCT
TATCGCATGG AATATATTAA TGCAGAGCAA CTTAAAGAGT TAGCTCTGCC ATTAGTGAAA
TCAGGCTATG GTCGCTATTT ATTAGAGTTA TTAGAGCATA AAGCTTTTTA A
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| Protein sequence | MTIQRKGIIL AGGSGTRLYP LTKVVSKQLM PVYDKPMIYY PISNLMVAGI KEILIISTPE
ELPRFKDLLG DGSAWGVSFE YVEQPSPDGL AQAFILAEEF LAGAPAALIL GDNLFYGHDL
PKSLKNANAQ ESGATVFGYH VSNPSSYGVV ELDKEEGTAI SIEEKPVKPK SNYAVAGLYF
FDSKVVEFAK NVQPSERGEL EITDVIEQYL EANTLKVERM GRGTAWLDTG TLDDLLDAAV
FIRAIEKRQG LKISCPEEIA YRMEYINAEQ LKELALPLVK SGYGRYLLEL LEHKAF
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