More than 300 homologs were found in PanDaTox collection
for query gene Rru_A0981 on replicon NC_007643
Organism: Rhodospirillum rubrum ATCC 11170



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007643  Rru_A0981  binding-protein dependent transport system inner membrane protein  100 
 
 
314 aa  617  1e-176  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.456194  n/a   
 
 
-
 
NC_012880  Dd703_1837  binding-protein-dependent transport systems inner membrane component  58.95 
 
 
290 aa  343  2e-93  Dickeya dadantii Ech703  Bacteria  normal  0.398193  n/a   
 
 
-
 
NC_007778  RPB_1497  binding-protein dependent transport system inner membrane protein  52.45 
 
 
320 aa  311  1e-83  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.726919  normal  0.257392 
 
 
-
 
NC_008786  Veis_2004  binding-protein-dependent transport systems inner membrane component  50.81 
 
 
298 aa  288  1e-76  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.870521 
 
 
-
 
NC_007958  RPD_4025  binding-protein-dependent transport systems inner membrane component  53.14 
 
 
296 aa  284  1.0000000000000001e-75  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.946675 
 
 
-
 
NC_011004  Rpal_1408  binding-protein-dependent transport systems inner membrane component  52.21 
 
 
296 aa  281  1e-74  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.0788732  n/a   
 
 
-
 
NC_010511  M446_3925  binding-protein-dependent transport systems inner membrane component  48.1 
 
 
303 aa  278  6e-74  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0134346 
 
 
-
 
NC_007778  RPB_1223  binding-protein dependent transport system inner membrane protein  51.28 
 
 
296 aa  278  6e-74  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_1196  binding-protein-dependent transport systems inner membrane component  50 
 
 
296 aa  277  1e-73  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_4368  binding-protein-dependent transport systems inner membrane component  48.7 
 
 
324 aa  276  3e-73  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_5257  putative ABC transporter (permease protein)  49.08 
 
 
296 aa  270  2.9999999999999997e-71  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.216925  normal  0.133052 
 
 
-
 
NC_010511  M446_2208  binding-protein-dependent transport systems inner membrane component  55.56 
 
 
288 aa  268  8.999999999999999e-71  Methylobacterium sp. 4-46  Bacteria  normal  0.700079  normal  0.152273 
 
 
-
 
NC_009485  BBta_5120  putative ABC transporter permease protein  52.9 
 
 
305 aa  266  2.9999999999999995e-70  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.30642 
 
 
-
 
NC_011894  Mnod_0402  binding-protein-dependent transport systems inner membrane component  57.47 
 
 
290 aa  253  4.0000000000000004e-66  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_1554  binding-protein-dependent transport systems inner membrane component  48.87 
 
 
299 aa  249  3e-65  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_3641  binding-protein-dependent transport systems inner membrane component  49.82 
 
 
272 aa  247  1e-64  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_007974  Rmet_5090  ABC transporter permease  51.35 
 
 
299 aa  238  1e-61  Cupriavidus metallidurans CH34  Bacteria  normal  0.661687  normal  0.572784 
 
 
-
 
NC_008786  Veis_1865  binding-protein-dependent transport systems inner membrane component  52.12 
 
 
293 aa  238  1e-61  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.498595  normal  0.124363 
 
 
-
 
NC_008687  Pden_3802  binding-protein-dependent transport systems inner membrane component  51.86 
 
 
287 aa  237  2e-61  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.201006 
 
 
-
 
NC_012791  Vapar_1216  binding-protein-dependent transport systems inner membrane component  41.96 
 
 
279 aa  212  7e-54  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_011366  Rleg2_5761  binding-protein-dependent transport systems inner membrane component  41.46 
 
 
289 aa  209  6e-53  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.133944  normal  0.758242 
 
 
-
 
NC_004311  BRA1093  peptide ABC transporter, permease protein, putative  45.37 
 
 
296 aa  208  8e-53  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_012858  Rleg_6668  binding-protein-dependent transport systems inner membrane component  40.96 
 
 
289 aa  207  2e-52  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  hitchhiker  0.00661065  normal  0.0160024 
 
 
-
 
NC_009668  Oant_2986  binding-protein-dependent transport systems inner membrane component  40.07 
 
 
291 aa  205  7e-52  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009040  Rsph17029_4149  binding-protein-dependent transport systems inner membrane component  41.31 
 
 
301 aa  205  1e-51  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal  0.656131 
 
 
-
 
NC_009007  RSP_3890  ABC di/oligopeptide transporter, inner membrane subunit  41.31 
 
 
301 aa  205  1e-51  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_0932  binding-protein-dependent transport systems inner membrane component  46.88 
 
 
279 aa  204  1e-51  Rhodoferax ferrireducens T118  Bacteria  normal  0.927066  n/a   
 
 
-
 
NC_009253  Dred_2452  binding-protein-dependent transport systems inner membrane component  40.13 
 
 
296 aa  204  2e-51  Desulfotomaculum reducens MI-1  Bacteria  normal  0.0368392  n/a   
 
 
-
 
NC_011988  Avi_5089  ABC transporter membrane spanning protein (dipeptide)  40.64 
 
 
293 aa  201  9e-51  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_0658  binding-protein-dependent transport systems inner membrane component  47.32 
 
 
279 aa  201  9.999999999999999e-51  Polaromonas sp. JS666  Bacteria  normal  0.369751  normal 
 
 
-
 
NC_013411  GYMC61_1354  binding-protein-dependent transport systems inner membrane component  38.64 
 
 
299 aa  197  2.0000000000000003e-49  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_007802  Jann_4129  binding-protein-dependent transport systems inner membrane component  40.82 
 
 
312 aa  192  9e-48  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_011661  Dtur_0860  binding-protein-dependent transport systems inner membrane component  39.51 
 
 
287 aa  191  1e-47  Dictyoglomus turgidum DSM 6724  Bacteria  hitchhiker  0.000000642732  n/a   
 
 
-
 
NC_008786  Veis_3326  binding-protein-dependent transport systems inner membrane component  41.26 
 
 
279 aa  190  2.9999999999999997e-47  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.862949  normal  0.0950252 
 
 
-
 
NC_010625  Bphy_6649  binding-protein-dependent transport systems inner membrane component  38.71 
 
 
294 aa  187  2e-46  Burkholderia phymatum STM815  Bacteria  normal  0.789298  normal 
 
 
-
 
NC_012793  GWCH70_0481  binding-protein-dependent transport systems inner membrane component  38.95 
 
 
299 aa  186  4e-46  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.00209608  n/a   
 
 
-
 
NC_013204  Elen_1222  binding-protein-dependent transport systems inner membrane component  38.33 
 
 
310 aa  186  4e-46  Eggerthella lenta DSM 2243  Bacteria  normal  normal  0.0299978 
 
 
-
 
NC_010681  Bphyt_3128  binding-protein-dependent transport systems inner membrane component  37.9 
 
 
301 aa  185  9e-46  Burkholderia phytofirmans PsJN  Bacteria  normal  0.265268  normal 
 
 
-
 
NC_011988  Avi_5351  ABC transporter membrane spanning protein (dipeptide)  37.2 
 
 
317 aa  184  2.0000000000000003e-45  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_012856  Rpic12D_1321  binding-protein-dependent transport systems inner membrane component  37.22 
 
 
299 aa  183  4.0000000000000006e-45  Ralstonia pickettii 12D  Bacteria  normal  0.213083  normal 
 
 
-
 
NC_010682  Rpic_1255  binding-protein-dependent transport systems inner membrane component  37.22 
 
 
299 aa  183  4.0000000000000006e-45  Ralstonia pickettii 12J  Bacteria  normal  0.356305  normal  0.757644 
 
 
-
 
NC_013739  Cwoe_2947  binding-protein-dependent transport systems inner membrane component  37.29 
 
 
300 aa  183  4.0000000000000006e-45  Conexibacter woesei DSM 14684  Bacteria  normal  0.456335  normal  0.0430362 
 
 
-
 
NC_008148  Rxyl_2422  binding-protein-dependent transport systems inner membrane component  45.54 
 
 
311 aa  182  5.0000000000000004e-45  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A1924  binding-protein dependent transport system inner membrane protein  40.73 
 
 
303 aa  182  6e-45  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS4391  oligopeptide ABC transporter oligopeptide-binding protein  37.89 
 
 
299 aa  181  2e-44  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_4232  oligopeptide transport system, permease  37.89 
 
 
299 aa  181  2e-44  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK4244  oligopeptide ABC transporter, permease  37.89 
 
 
299 aa  181  2e-44  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_0132  binding-protein-dependent transport systems inner membrane component  37.82 
 
 
300 aa  181  2e-44  Conexibacter woesei DSM 14684  Bacteria  normal  0.765267  normal 
 
 
-
 
NC_007530  GBAA_4731  oligopeptide ABC transporter oligopeptide-binding protein  37.89 
 
 
299 aa  181  2e-44  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_1493  binding-protein-dependent transport systems inner membrane component  38.75 
 
 
301 aa  181  2e-44  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_009487  SaurJH9_0192  binding-protein-dependent transport systems inner membrane component  37.61 
 
 
387 aa  180  2e-44  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_4609  oligopeptide ABC transporter, oligopeptide-binding protein  37.89 
 
 
299 aa  181  2e-44  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_009632  SaurJH1_0198  binding-protein-dependent transport systems inner membrane component  37.61 
 
 
387 aa  180  2e-44  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.955086  n/a   
 
 
-
 
NC_012880  Dd703_0144  binding-protein-dependent transport systems inner membrane component  36.54 
 
 
298 aa  179  4e-44  Dickeya dadantii Ech703  Bacteria  normal  0.0407535  n/a   
 
 
-
 
NC_013421  Pecwa_2972  binding-protein-dependent transport systems inner membrane component  38.08 
 
 
301 aa  179  4e-44  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_2680  binding-protein dependent transport system inner membrane protein  38.19 
 
 
290 aa  179  4.999999999999999e-44  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.129024  normal  0.890863 
 
 
-
 
NC_007519  Dde_1183  putative permease of ABC transporter  44.59 
 
 
301 aa  179  4.999999999999999e-44  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.056047  n/a   
 
 
-
 
NC_013946  Mrub_2660  binding-protein-dependent transport systems inner membrane component  39.16 
 
 
294 aa  179  4.999999999999999e-44  Meiothermus ruber DSM 1279  Bacteria  normal  decreased coverage  0.00097283 
 
 
-
 
NC_007908  Rfer_0983  binding-protein-dependent transport systems inner membrane component  39.93 
 
 
283 aa  179  4.999999999999999e-44  Rhodoferax ferrireducens T118  Bacteria  normal  0.292218  n/a   
 
 
-
 
NC_010086  Bmul_4424  binding-protein-dependent transport systems inner membrane component  38.26 
 
 
297 aa  179  5.999999999999999e-44  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.434464  normal 
 
 
-
 
NC_003295  RSc1382  transmembrane ABC transporter protein  39.02 
 
 
299 aa  179  7e-44  Ralstonia solanacearum GMI1000  Bacteria  normal  0.131281  normal 
 
 
-
 
NC_013743  Htur_2407  binding-protein-dependent transport systems inner membrane component  37.28 
 
 
309 aa  179  7e-44  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_010552  BamMC406_4054  binding-protein-dependent transport systems inner membrane component  37.79 
 
 
297 aa  178  9e-44  Burkholderia ambifaria MC40-6  Bacteria  normal  0.181968  normal 
 
 
-
 
NC_013421  Pecwa_4400  binding-protein-dependent transport systems inner membrane component  37.8 
 
 
299 aa  178  1e-43  Pectobacterium wasabiae WPP163  Bacteria  normal  0.111328  n/a   
 
 
-
 
NC_011830  Dhaf_0455  binding-protein-dependent transport systems inner membrane component  40.99 
 
 
309 aa  178  1e-43  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_3840  binding-protein-dependent transport systems inner membrane component  38.54 
 
 
298 aa  178  1e-43  Roseiflexus castenholzii DSM 13941  Bacteria  decreased coverage  0.00781305  normal  0.217965 
 
 
-
 
NC_010515  Bcenmc03_3351  binding-protein-dependent transport systems inner membrane component  36.93 
 
 
297 aa  178  1e-43  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.110641  normal 
 
 
-
 
NC_009429  Rsph17025_3965  hypothetical protein  38.03 
 
 
300 aa  178  1e-43  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.16334 
 
 
-
 
NC_008061  Bcen_4201  binding-protein-dependent transport systems inner membrane component  36.93 
 
 
297 aa  178  1e-43  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.774005  n/a   
 
 
-
 
NC_008391  Bamb_3573  binding-protein-dependent transport systems inner membrane component  37.79 
 
 
297 aa  178  1e-43  Burkholderia ambifaria AMMD  Bacteria  normal  0.172272  normal  0.144154 
 
 
-
 
NC_008543  Bcen2424_4165  binding-protein-dependent transport systems inner membrane component  36.93 
 
 
297 aa  178  1e-43  Burkholderia cenocepacia HI2424  Bacteria  normal  hitchhiker  0.00723958 
 
 
-
 
NC_010623  Bphy_4223  binding-protein-dependent transport systems inner membrane component  37.78 
 
 
301 aa  178  1e-43  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_013946  Mrub_1443  binding-protein-dependent transport systems inner membrane component  41.15 
 
 
277 aa  177  2e-43  Meiothermus ruber DSM 1279  Bacteria  normal  0.486684  normal 
 
 
-
 
NC_012912  Dd1591_3973  binding-protein-dependent transport systems inner membrane component  37.58 
 
 
300 aa  177  2e-43  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_3488  binding-protein-dependent transport systems inner membrane component  42.54 
 
 
279 aa  177  2e-43  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_008686  Pden_0606  binding-protein-dependent transport systems inner membrane component  35.64 
 
 
323 aa  177  2e-43  Paracoccus denitrificans PD1222  Bacteria  normal  0.145081  normal 
 
 
-
 
NC_013173  Dbac_2922  binding-protein-dependent transport systems inner membrane component  38.64 
 
 
285 aa  177  2e-43  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_007650  BTH_II1115  dipeptide ABC transporter, permease protein, putative  43.97 
 
 
300 aa  177  3e-43  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_0778  binding-protein-dependent transport systems inner membrane component  36.7 
 
 
300 aa  177  3e-43  Desulfovibrio vulgaris DP4  Bacteria  normal  0.0620007  normal  0.517219 
 
 
-
 
NC_012917  PC1_4111  binding-protein-dependent transport systems inner membrane component  38.14 
 
 
299 aa  177  3e-43  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.553979  n/a   
 
 
-
 
NC_007973  Rmet_1410  binding-protein-dependent transport systems inner membrane component  42.42 
 
 
300 aa  176  4e-43  Cupriavidus metallidurans CH34  Bacteria  normal  0.0895579  normal  0.0461956 
 
 
-
 
NC_008044  TM1040_0713  binding-protein-dependent transport systems inner membrane component  40.34 
 
 
330 aa  176  4e-43  Ruegeria sp. TM1040  Bacteria  normal  0.409479  normal 
 
 
-
 
NC_010718  Nther_2403  binding-protein-dependent transport systems inner membrane component  38.73 
 
 
304 aa  176  5e-43  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  hitchhiker  0.0000000292743  normal 
 
 
-
 
NC_007951  Bxe_A0838  ABC peptide transporter, inner membrane subunit  42.17 
 
 
301 aa  176  5e-43  Burkholderia xenovorans LB400  Bacteria  hitchhiker  0.00766751  normal 
 
 
-
 
NC_007519  Dde_2594  oligopeptide ABC transporter, permease protein  36.5 
 
 
285 aa  176  6e-43  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_3628  binding-protein-dependent transport systems inner membrane component  38.67 
 
 
308 aa  175  9e-43  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_3298  binding-protein-dependent transport systems inner membrane component  39.39 
 
 
349 aa  175  9.999999999999999e-43  Jannaschia sp. CCS1  Bacteria  normal  0.877602  normal  0.186988 
 
 
-
 
NC_007948  Bpro_0424  binding-protein-dependent transport systems inner membrane component  43.05 
 
 
281 aa  175  9.999999999999999e-43  Polaromonas sp. JS666  Bacteria  normal  0.170759  normal 
 
 
-
 
NC_010718  Nther_2788  binding-protein-dependent transport systems inner membrane component  38.08 
 
 
310 aa  174  1.9999999999999998e-42  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_013202  Hmuk_1596  binding-protein-dependent transport systems inner membrane component  36.21 
 
 
344 aa  174  1.9999999999999998e-42  Halomicrobium mukohataei DSM 12286  Archaea  normal  normal 
 
 
-
 
NC_008009  Acid345_1395  ABC peptide transporter, inner membrane subunit  39.06 
 
 
288 aa  174  1.9999999999999998e-42  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.064701  decreased coverage  0.00784209 
 
 
-
 
NC_008254  Meso_1504  binding-protein-dependent transport systems inner membrane component  36.39 
 
 
289 aa  174  1.9999999999999998e-42  Chelativorans sp. BNC1  Bacteria  normal  0.109416  n/a   
 
 
-
 
NC_009436  Ent638_0755  binding-protein-dependent transport systems inner membrane component  36.15 
 
 
291 aa  174  1.9999999999999998e-42  Enterobacter sp. 638  Bacteria  normal  0.0593743  normal  0.296521 
 
 
-
 
NC_012791  Vapar_5233  binding-protein-dependent transport systems inner membrane component  39.85 
 
 
283 aa  173  2.9999999999999996e-42  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_3822  binding-protein-dependent transport systems inner membrane component  35.48 
 
 
305 aa  173  2.9999999999999996e-42  Marinomonas sp. MWYL1  Bacteria  normal  0.429723  normal  0.768739 
 
 
-
 
NC_011083  SeHA_C0981  glutathione transport system permease GsiD  40.07 
 
 
303 aa  173  3.9999999999999995e-42  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_007511  Bcep18194_B1865  dipeptide/oligopeptide/nickel ABC transporter inner membrane protein  36.43 
 
 
297 aa  173  3.9999999999999995e-42  Burkholderia sp. 383  Bacteria  normal  normal  0.501762 
 
 
-
 
NC_010718  Nther_2756  binding-protein-dependent transport systems inner membrane component  36.74 
 
 
303 aa  173  3.9999999999999995e-42  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A0919  glutathione transport system permease protein GsiD  40.07 
 
 
303 aa  173  3.9999999999999995e-42  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.285756  normal 
 
 
-
 
NC_011205  SeD_A0952  glutathione transport system permease GsiD  40.07 
 
 
303 aa  173  3.9999999999999995e-42  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.642486  normal 
 
 
-
 
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