| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5089 |
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| Symbol | |
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| ID | 7380902 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 82317 |
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| End bp | 83198 |
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| Gene Length | 882 bp |
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| Protein Length | 293 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 643648755 |
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| Product | ABC transporter membrane spanning protein (dipeptide) |
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| Protein accession | YP_002546992 |
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| Protein GI | 222106201 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCCAAC CCATATCCTT AGAGATCACG CCCCCGCCGC AATCAGAAAC CCTGCGCTTT
CTGCGCCGCC TTTTGCGCCG CAAGACGGTG GCGATTGGCC TGTGCATTCT CACCATCTTC
GTGCTGCTGG CGGTGTTGGC ACCGTGGATT GCCCCTTATT CGCCCTACAA ACTTTCGATC
ATGAACCGGA TAAAACCGCC GAGCGGAACC TATTGGTTTG GCACGGATGA GTTTGGACGC
GATGTGTTTT CGCGCACGAT TTATGCGGGA CGGCTGTCTT TGCTGGTTGG CGCCTCAGTC
GTGGCGCTGT CATCGCTGAT TGGCGTCACG CTTGGACTTC TCGCAGGCTT TTTTCATCGG
CTGGATACGC CGATTGCCCG GTTGATCGAC GCGATGATGG CCTTTCCCGA TATTCTTCTG
GCCATCGCAT TGGTAGCGGC CCTTGGGCCA TCGCTCACCA CCGTGATCAT CGCGCTTTCA
GTGGTTTATG CGCCCCGATT GGCCCGCATT GTGCGAGCCT CAACGCTGGT GATCCGCGAG
CTACCCTATA TCGAAGCGGC CCGTGCGCTT GGTATTTCCA CCACACACAT CATGGTGCGG
CATGTGCTGC GCAATCTGAT GTCGCCCATT CTGGTGCAGG CTACGTTTTT GTTCGCCAGC
GCCATGCTGG CCGAAGCGGG CCTGTCGTTT CTGGGCGTTG GCGTCAGCCC GGAAATTCCC
ACCTGGGGCA CCATGATTGC GGCTGGTCGG CAATATGTCG ATCAGGCCGA TTGGATGACG
CTGTTTCCCG GCTTTGCCAT CATTCTCTCT GTGATGTCGC TTCAGATCGT CGGAGACGGT
TTGCGTGACA TGCTCGACCC AAGACTGCAA AAGGATATTT GA
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| Protein sequence | MTQPISLEIT PPPQSETLRF LRRLLRRKTV AIGLCILTIF VLLAVLAPWI APYSPYKLSI
MNRIKPPSGT YWFGTDEFGR DVFSRTIYAG RLSLLVGASV VALSSLIGVT LGLLAGFFHR
LDTPIARLID AMMAFPDILL AIALVAALGP SLTTVIIALS VVYAPRLARI VRASTLVIRE
LPYIEAARAL GISTTHIMVR HVLRNLMSPI LVQATFLFAS AMLAEAGLSF LGVGVSPEIP
TWGTMIAAGR QYVDQADWMT LFPGFAIILS VMSLQIVGDG LRDMLDPRLQ KDI
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