Gene RPC_3488 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPC_3488 
Symbol 
ID3972855 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB18 
KingdomBacteria 
Replicon accessionNC_007925 
Strand
Start bp3874154 
End bp3874993 
Gene Length840 bp 
Protein Length279 aa 
Translation table11 
GC content68% 
IMG OID637926600 
Productbinding-protein-dependent transport systems inner membrane component 
Protein accessionYP_533347 
Protein GI90424977 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATACGC TCAAAGCTTT CCTGCGCCAC CCGACCGGCC TGATCGGCTT CGTCATCCTG 
CTCGCGGTGA TCGCGCTCGC GGCGGCGGCG CCGGCGCTGT TTCCCGAGGA TCCCTGGGAA
ATGATCGGCG CGCCGTTCCA GCCGCCGTTC AGCGAGGGGC TGTGGCTCGG ATCCGACATG
CTCGGCCGCG ACATCGCCGC CGGCATCGCC CACGGCGCGC GGGTGTCGCT CTCCATCGGC
GTCGCCTCGA CGCTGGCCGC GGTGTGCATC GGCGTCGTGG TCGGCGCCAT CGCCGGCTAT
TTCGGCGGCA AGGTCGACGA CCTGATGATG CGCGTCACCG AACTGTTCCA GACCATCCCC
GGCTTCATCC TGGCGATCCT GCTGGTGGCG ACGCTGGGGC CGACGCTGAG CAACGTCATC
ATCGCAATCG GCGCGGTGAG CTGGCCGCCA TTGGCGCGCC TGACCCGCGC GGAGTTTCTG
CGGCTGCGCG GCCGGGAATT CGTCCAGGCC GCGGTGTGCC AGGGCCAGCC GCCGATGGTG
GTGGTGCTGC GCCACATCCT GCCCAACGCG ATCTCGCCGA TCATCGTCAC CGGTTCGCTG
ACCATCGCCA CCGCGATCCT GATCGAGAGC GCGCTGAGCT TCCTCGGGCT CGGCGATCCC
AACCTGATGT CCTGGGGCTT CATGATCGGC GCCTCGCGCA CCGTGATGCG CCAGGCCTGG
TGGATGAGCG TGTTTCCCGG CATCGCCATC CTGCTCACCG TGCTGGCCAT CAATCTGGTC
GGCGAGGGAC TGAACGACAC GCTGAACCCG CGCATCTCCC GAAGGGGCCG AACCGTATGA
 
Protein sequence
MDTLKAFLRH PTGLIGFVIL LAVIALAAAA PALFPEDPWE MIGAPFQPPF SEGLWLGSDM 
LGRDIAAGIA HGARVSLSIG VASTLAAVCI GVVVGAIAGY FGGKVDDLMM RVTELFQTIP
GFILAILLVA TLGPTLSNVI IAIGAVSWPP LARLTRAEFL RLRGREFVQA AVCQGQPPMV
VVLRHILPNA ISPIIVTGSL TIATAILIES ALSFLGLGDP NLMSWGFMIG ASRTVMRQAW
WMSVFPGIAI LLTVLAINLV GEGLNDTLNP RISRRGRTV