| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1554 |
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| Symbol | |
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| ID | 7974783 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1679360 |
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| End bp | 1680259 |
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| Gene Length | 900 bp |
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| Protein Length | 299 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644792154 |
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| Product | binding-protein-dependent transport systems inner membrane component |
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| Protein accession | YP_002943471 |
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| Protein GI | 239814561 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTGAAC TTCCACCACC CGTTGCCACC GCCGCGCCCG TGGCCATGGT CGACGAAGCG
CCCTTCGTGC CGCCGCGCTG GCGCTGGGTG CGCAAGCATC CGACGCTGAT CATCGGCGGG
CTGCTGCTGG TGGCAGTGGC CGCCGTCTCC ATCGGCGCGC CCTGGATCGC CACCTTCGAT
CCGCAGGACA TCGATCCGCT CGCGCGCATG CAGCCGCCCT CGGCCGAGCA CCTGTTCGGC
ACCGACGCAC TCGGCCGCGA CGTGTTCAGC CGCGCCGTGT GGGGCGGGCA AGTGTCGATG
ATCGTGGGCG CCTCGGTTGC GCTGCTCGCG ACTTTCTTCG GCGTGCTGAT CGGCCTTTTC
GCGGGCTTCG TGCGCTGGGC CGACGGGCCG GTGATGCGCG TGATGGACGG GCTCATGGCC
ATTCCCGGCA TCCTGCTGGC CATTGCGCTC ATGGCGGTGA CGCGCGCCAG CCTCACGACG
GTGATCGTCG CCATCACGGT GCCCGAGATC CCGCGCGTGG TGCGGCTGGT GCGCTCGCTC
GCGCTCACCC TGCGCGAGCA GCTGTACGTC GAGGCCGCGC ATGCGGTCGG CACGCGGTTG
CCGGTGATCC TGCTGCGCCA CGTGCTGCCC AACATGGTGG CGCCGCTGAT CGTGCAGTCG
ACCTTCGTGG CCGCTGCCGC GGTGCTGACC GAAGCGGCGC TTTCCTTCCT GGGCGTGGGC
GTGCCGACGC AGACGCCGAG CTGGGGCAAC ATGATGGCCG AGGGCCGCAA CTTCGTGGCG
GTGGCGTTCC ACATCATCCT GTACCCGGGC CTGCTGCTGG CGGCCACGGT GCTGGCAATC
AACCTGCTGG GCGACGGCCT GCGCGATGCG CTCGACCCGC GCCTGGCGCG GCAGCTGTGA
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| Protein sequence | MSELPPPVAT AAPVAMVDEA PFVPPRWRWV RKHPTLIIGG LLLVAVAAVS IGAPWIATFD
PQDIDPLARM QPPSAEHLFG TDALGRDVFS RAVWGGQVSM IVGASVALLA TFFGVLIGLF
AGFVRWADGP VMRVMDGLMA IPGILLAIAL MAVTRASLTT VIVAITVPEI PRVVRLVRSL
ALTLREQLYV EAAHAVGTRL PVILLRHVLP NMVAPLIVQS TFVAAAAVLT EAALSFLGVG
VPTQTPSWGN MMAEGRNFVA VAFHIILYPG LLLAATVLAI NLLGDGLRDA LDPRLARQL
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