| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_5090 |
|---|
| Symbol | dppC |
|---|
| ID | 4041951 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007974 |
|---|
| Strand | + |
|---|
| Start bp | 1780109 |
|---|
| End bp | 1781008 |
|---|
| Gene Length | 900 bp |
|---|
| Protein Length | 299 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 637980508 |
|---|
| Product | ABC transporter permease |
|---|
| Protein accession | YP_587218 |
|---|
| Protein GI | 94314009 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.661687 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.572784 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGCTA CCCTGCCCTC GCGCCAGGAC GCCGCCGCAC GGCCGGCGGA CGACGACGCG
CCGTTCGTGC TGCCCCGCTG GTACTGGGCG CGCAAGCATC CCACCCTCGT CATTGGCGCC
GTGCTCCTGC TGGCCGTTGC CGCGCTGGCG ATCGCCGCGC CGTGGATCTC GCCGTTCGAC
CCGCAGGACA TTGACCCGCT GGCGCGTATG CAGCCGCCTT CCGCCGAACA CTGGTTCGGC
ACCGATGCGC TGGGCCGCGA CGTGTTCAGC CGCGCGGTCT GGGGCGGCCG CGTGTCGATG
ATCGTCGCCC TCTCGGTCGG CCTGCTATCC ACCGTGCTGG GCGTCAGCAT CGGCCTGACC
GCCGGCTTCG TGCGCTGGAC CGACGGCTTT CTCATGCGCG TGATGGACGG GCTGATGGCC
ATCCCGGGCA TCCTGCTGGC GATCGCGCTG ATGGCACTGA CCCAGGCCAG CCTGGGTGCG
GTGATCGTCG CCATCACCGT CCCCGAGGTG CCGCGCGTGG TGCGGCTGGT TCGCTCGATG
GCGCTGACCC TGCGCGAGCA ACTGTACGTC GAAGCCGCGC ACGCGGTTGG CACGCGGCTG
CCGGTGATCC TGCTGCGCCA CGTGCTGCCC AACATGGTCG CGCCGCTGAT CGTGCAGGCC
ACCTTTGTCG CGGCAGCGGC CGTTCTGACC GAGGCGGCGC TGTCCTTCCT CGGCGTGGGC
GTGCCGGCGC AGACGCCAAG CTGGGGCAAC ATCATGGCCG AGGGCCGCAA CTTCGTTGCC
GTGGCTTTCC ACATCCTGCT GTATCCCGGC CTGCTGCTGG CCGCCACCGT GCTCGCTATC
AACCTGCTCG GCGACGGCCT GCGCGATGCG CTCGATCCGC GCCTGGCGCG CCAACTCTGA
|
|---|
| Protein sequence | MTATLPSRQD AAARPADDDA PFVLPRWYWA RKHPTLVIGA VLLLAVAALA IAAPWISPFD
PQDIDPLARM QPPSAEHWFG TDALGRDVFS RAVWGGRVSM IVALSVGLLS TVLGVSIGLT
AGFVRWTDGF LMRVMDGLMA IPGILLAIAL MALTQASLGA VIVAITVPEV PRVVRLVRSM
ALTLREQLYV EAAHAVGTRL PVILLRHVLP NMVAPLIVQA TFVAAAAVLT EAALSFLGVG
VPAQTPSWGN IMAEGRNFVA VAFHILLYPG LLLAATVLAI NLLGDGLRDA LDPRLARQL
|
|---|
| |