More than 300 homologs were found in PanDaTox collection
for query gene Rmet_4578 on replicon NC_007974
Organism: Cupriavidus metallidurans CH34



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007974  Rmet_4578  dipeptide/oligopeptide/nickel ABC transporter transport system, substrate binding protein  100 
 
 
575 aa  1187    Cupriavidus metallidurans CH34  Bacteria  normal  0.364144  hitchhiker  0.00551772 
 
 
-
 
NC_008786  Veis_4964  extracellular solute-binding protein  60.04 
 
 
571 aa  700    Verminephrobacter eiseniae EF01-2  Bacteria  decreased coverage  0.000193242  normal 
 
 
-
 
NC_012912  Dd1591_3630  extracellular solute-binding protein family 5  28.73 
 
 
514 aa  136  9.999999999999999e-31  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_3842  extracellular solute-binding protein  24.72 
 
 
568 aa  134  3.9999999999999996e-30  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.0450891  normal  0.108057 
 
 
-
 
NC_006274  BCZK4243  solute-binding family 5 protein  28.16 
 
 
521 aa  130  6e-29  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_007355  Mbar_A3677  oligopeptide ABC transporter, oligopeptide-binding protein  28.4 
 
 
520 aa  130  8.000000000000001e-29  Methanosarcina barkeri str. Fusaro  Archaea  normal  0.969921  normal  0.0940549 
 
 
-
 
NC_013946  Mrub_2658  extracellular solute-binding protein family 5  31.08 
 
 
529 aa  130  8.000000000000001e-29  Meiothermus ruber DSM 1279  Bacteria  normal  hitchhiker  0.00293814 
 
 
-
 
NC_011773  BCAH820_4608  extracellular solute-binding protein  28.16 
 
 
521 aa  130  9.000000000000001e-29  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_005945  BAS4390  solute-binding family 5 protein  28.16 
 
 
521 aa  130  9.000000000000001e-29  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_4231  oligopeptide ABC transporter, oligopeptide-binding protein  28.16 
 
 
521 aa  130  9.000000000000001e-29  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_4729  solute-binding family 5 protein  28.16 
 
 
521 aa  130  9.000000000000001e-29  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_0815  extracellular solute-binding protein  27.31 
 
 
532 aa  129  2.0000000000000002e-28  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.17042  normal 
 
 
-
 
NC_014212  Mesil_2587  extracellular solute-binding protein family 5  24.83 
 
 
502 aa  128  3e-28  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_3755  extracellular solute-binding protein family 5  28.65 
 
 
547 aa  127  4.0000000000000003e-28  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_3283  extracellular solute-binding protein  26.91 
 
 
545 aa  127  5e-28  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.5632  normal 
 
 
-
 
NC_007951  Bxe_A0181  ABC dipeptide transporter, periplasmic ligand binding protein  28.37 
 
 
547 aa  127  6e-28  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_0130  extracellular solute-binding protein family 5  27.33 
 
 
542 aa  127  7e-28  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.870572 
 
 
-
 
NC_010086  Bmul_4426  extracellular solute-binding protein  27.49 
 
 
520 aa  126  1e-27  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_58350  putative binding protein component of ABC transpor  26.98 
 
 
537 aa  126  1e-27  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_013522  Taci_0008  extracellular solute-binding protein family 5  25.6 
 
 
544 aa  125  2e-27  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  hitchhiker  0.00260142  n/a   
 
 
-
 
NC_013522  Taci_0009  extracellular solute-binding protein family 5  26.14 
 
 
544 aa  125  2e-27  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  0.327799  n/a   
 
 
-
 
NC_010718  Nther_2405  extracellular solute-binding protein family 5  24.04 
 
 
532 aa  124  4e-27  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  hitchhiker  0.0000000000184044  normal 
 
 
-
 
NC_008254  Meso_2375  twin-arginine translocation pathway signal  25.68 
 
 
514 aa  124  5e-27  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_5110  ABC transporter periplasmic binding protein  26.25 
 
 
537 aa  124  5e-27  Pseudomonas aeruginosa PA7  Bacteria  normal  0.321263  n/a   
 
 
-
 
NC_011894  Mnod_1769  extracellular solute-binding protein family 5  28.39 
 
 
589 aa  123  8e-27  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011988  Avi_5641  ABC transporter substrate binding protein (oligopeptide)  27.33 
 
 
508 aa  123  8e-27  Agrobacterium vitis S4  Bacteria  normal  0.543478  n/a   
 
 
-
 
NC_013411  GYMC61_1352  extracellular solute-binding protein family 5  25.84 
 
 
534 aa  123  8e-27  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009078  BURPS1106A_A1768  putative glutathione ABC transporter, periplasmic glutathione-binding protein  27.03 
 
 
520 aa  123  9.999999999999999e-27  Burkholderia pseudomallei 1106a  Bacteria  normal  0.852283  n/a   
 
 
-
 
NC_012880  Dd703_3507  extracellular solute-binding protein family 5  26.53 
 
 
510 aa  122  9.999999999999999e-27  Dickeya dadantii Ech703  Bacteria  normal  0.224944  n/a   
 
 
-
 
NC_009079  BMA10247_A1359  putative glutathione ABC transporter, periplasmic glutathione-binding protein  27.03 
 
 
520 aa  123  9.999999999999999e-27  Burkholderia mallei NCTC 10247  Bacteria  normal  0.442837  n/a   
 
 
-
 
NC_006349  BMAA0975  putative dipeptide ABC transporter periplasmic dipeptide-binding protein  27.03 
 
 
520 aa  123  9.999999999999999e-27  Burkholderia mallei ATCC 23344  Bacteria  normal  0.124849  n/a   
 
 
-
 
NC_007435  BURPS1710b_A0324  putative ABC transporter substrate-binding protein  27.03 
 
 
520 aa  123  9.999999999999999e-27  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A1853  putative binding protein YliB  27.03 
 
 
520 aa  123  9.999999999999999e-27  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_008784  BMASAVP1_0402  putative glutathione ABC transporter, periplasmic glutathione-binding protein  27.03 
 
 
520 aa  123  9.999999999999999e-27  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_0238  putative glutathione ABC transporter, periplasmic glutathione-binding protein  27.03 
 
 
520 aa  123  9.999999999999999e-27  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_0845  extracellular solute-binding protein  28.41 
 
 
532 aa  122  1.9999999999999998e-26  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A0182  ABC dipeptide transporter, periplasmic ligand binding protein  27.6 
 
 
542 aa  122  1.9999999999999998e-26  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_5114  ABC transporter periplasmic binding protein  26.44 
 
 
533 aa  121  3e-26  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A3006  extracellular solute-binding protein  26.72 
 
 
528 aa  120  4.9999999999999996e-26  Ralstonia eutropha JMP134  Bacteria  normal  0.165169  n/a   
 
 
-
 
NC_014212  Mesil_2497  extracellular solute-binding protein family 5  30.23 
 
 
528 aa  120  4.9999999999999996e-26  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.0778602 
 
 
-
 
NC_008254  Meso_0074  twin-arginine translocation pathway signal  27.46 
 
 
514 aa  120  6e-26  Chelativorans sp. BNC1  Bacteria  normal  0.0403886  n/a   
 
 
-
 
NC_009669  Oant_4615  4-phytase  26.16 
 
 
502 aa  120  7e-26  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_011661  Dtur_0858  4-phytase  32.48 
 
 
524 aa  120  7.999999999999999e-26  Dictyoglomus turgidum DSM 6724  Bacteria  normal  0.557115  n/a   
 
 
-
 
NC_010682  Rpic_2161  extracellular solute-binding protein family 5  26.43 
 
 
532 aa  120  7.999999999999999e-26  Ralstonia pickettii 12J  Bacteria  normal  normal  0.283164 
 
 
-
 
NC_009656  PSPA7_5111  ABC transporter periplasmic binding protein  26.29 
 
 
532 aa  120  7.999999999999999e-26  Pseudomonas aeruginosa PA7  Bacteria  normal  0.914948  n/a   
 
 
-
 
NC_010681  Bphyt_3754  extracellular solute-binding protein family 5  27.38 
 
 
542 aa  119  9.999999999999999e-26  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.884226 
 
 
-
 
NC_012856  Rpic12D_1837  extracellular solute-binding protein family 5  26.42 
 
 
532 aa  119  9.999999999999999e-26  Ralstonia pickettii 12D  Bacteria  normal  0.350378  normal  0.136519 
 
 
-
 
NC_008463  PA14_58360  putative binding protein component of ABC transpor  26.29 
 
 
532 aa  119  9.999999999999999e-26  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_58390  putative binding protein component of ABC transpor  26.08 
 
 
533 aa  119  9.999999999999999e-26  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_012793  GWCH70_0479  4-phytase  25.9 
 
 
535 aa  119  1.9999999999999998e-25  Geobacillus sp. WCH70  Bacteria  normal  0.0187568  n/a   
 
 
-
 
NC_010622  Bphy_2914  extracellular solute-binding protein  27.48 
 
 
543 aa  118  3e-25  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_009429  Rsph17025_3275  hypothetical protein  29.16 
 
 
540 aa  118  3e-25  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.349389  normal 
 
 
-
 
NC_009439  Pmen_0844  extracellular solute-binding protein  24.95 
 
 
531 aa  118  3e-25  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_003295  RSc2870  periplasmic dipeptide transport protein  26.6 
 
 
509 aa  117  7.999999999999999e-25  Ralstonia solanacearum GMI1000  Bacteria  decreased coverage  0.00619899  normal  0.837363 
 
 
-
 
NC_008148  Rxyl_2424  twin-arginine translocation pathway signal  29.64 
 
 
565 aa  116  8.999999999999998e-25  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.0912792  n/a   
 
 
-
 
NC_007347  Reut_A2335  extracellular solute-binding protein  28.93 
 
 
531 aa  116  1.0000000000000001e-24  Ralstonia eutropha JMP134  Bacteria  normal  0.913035  n/a   
 
 
-
 
NC_007494  RSP_3255  ABC peptide transporter, periplasmic binding protein  28.02 
 
 
540 aa  116  1.0000000000000001e-24  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.433609  n/a   
 
 
-
 
NC_007650  BTH_II1113  dipeptide ABC transporter periplasmic dipeptide-binding protein, putative  26.56 
 
 
520 aa  116  1.0000000000000001e-24  Burkholderia thailandensis E264  Bacteria  normal  0.322522  n/a   
 
 
-
 
NC_007969  Pcryo_0759  extracellular solute-binding protein  28.37 
 
 
547 aa  116  1.0000000000000001e-24  Psychrobacter cryohalolentis K5  Bacteria  normal  normal  0.0395598 
 
 
-
 
NC_010159  YpAngola_A2540  peptide transport periplasmic protein precursor  25.52 
 
 
548 aa  116  1.0000000000000001e-24  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_010622  Bphy_0183  extracellular solute-binding protein  26.22 
 
 
532 aa  115  2.0000000000000002e-24  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_010622  Bphy_2915  extracellular solute-binding protein  27 
 
 
547 aa  115  3e-24  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_009050  Rsph17029_3988  extracellular solute-binding protein  28.02 
 
 
540 aa  114  3e-24  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_007511  Bcep18194_B1867  dipeptide/oligopeptide/nickel ABC periplasmic ligand-binding protein  25.94 
 
 
520 aa  114  3e-24  Burkholderia sp. 383  Bacteria  normal  0.30378  normal  0.527518 
 
 
-
 
NC_010552  BamMC406_4052  extracellular solute-binding protein  26.82 
 
 
520 aa  115  3e-24  Burkholderia ambifaria MC40-6  Bacteria  normal  0.544759  normal 
 
 
-
 
NC_006348  BMA0091  peptide ABC transporter, periplasmic peptide-binding protein  25 
 
 
528 aa  114  5e-24  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_0584  peptide ABC transporter, periplasmic peptide-binding protein  25 
 
 
528 aa  114  5e-24  Burkholderia pseudomallei 1710b  Bacteria  normal  0.542939  n/a   
 
 
-
 
NC_008836  BMA10229_A2005  peptide ABC transporter, periplasmic peptide-binding protein  25 
 
 
528 aa  114  5e-24  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2283  ABC transporter, periplasmic substrate-binding protein  25 
 
 
528 aa  114  5e-24  Burkholderia mallei NCTC 10247  Bacteria  normal  0.0708849  n/a   
 
 
-
 
NC_008391  Bamb_3571  extracellular solute-binding protein  26.82 
 
 
520 aa  114  5e-24  Burkholderia ambifaria AMMD  Bacteria  normal  0.57508  normal  0.258108 
 
 
-
 
NC_008785  BMASAVP1_A3091  ABC transporter, periplasmic substrate-binding protein  25 
 
 
528 aa  114  5e-24  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_2107  extracellular solute-binding protein  26.55 
 
 
532 aa  114  6e-24  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_4098  extracellular solute-binding protein family 5  27.18 
 
 
535 aa  114  6e-24  Dickeya zeae Ech1591  Bacteria  normal  0.711695  n/a   
 
 
-
 
NC_013521  Sked_18790  ABC-type dipeptide transport system, periplasmic component  26.65 
 
 
540 aa  114  6e-24  Sanguibacter keddieii DSM 10542  Bacteria  decreased coverage  0.00232176  normal  0.206883 
 
 
-
 
NC_007951  Bxe_A0836  ABC peptide transporter, periplasmic ligand binding protein  26.33 
 
 
520 aa  113  7.000000000000001e-24  Burkholderia xenovorans LB400  Bacteria  normal  0.385717  normal 
 
 
-
 
NC_013171  Apre_0387  extracellular solute-binding protein family 5  26.7 
 
 
503 aa  113  8.000000000000001e-24  Anaerococcus prevotii DSM 20548  Bacteria  hitchhiker  0.000000219856  n/a   
 
 
-
 
NC_008043  TM1040_3603  extracellular solute-binding protein  29.17 
 
 
507 aa  113  9e-24  Ruegeria sp. TM1040  Bacteria  normal  normal  0.721238 
 
 
-
 
NC_012912  Dd1591_1752  extracellular solute-binding protein family 5  25.81 
 
 
582 aa  113  1.0000000000000001e-23  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_0422  ABC transporter, periplasmic substrate-binding protein  24.78 
 
 
528 aa  113  1.0000000000000001e-23  Burkholderia pseudomallei 1106a  Bacteria  normal  0.537378  n/a   
 
 
-
 
NC_010725  Mpop_2065  extracellular solute-binding protein family 5  25.65 
 
 
543 aa  112  1.0000000000000001e-23  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_007973  Rmet_3158  extracellular solute-binding protein  25.36 
 
 
535 aa  113  1.0000000000000001e-23  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_0927  extracellular solute-binding protein  25.17 
 
 
530 aa  113  1.0000000000000001e-23  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_008686  Pden_1671  extracellular solute-binding protein  26.95 
 
 
538 aa  112  1.0000000000000001e-23  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.901467 
 
 
-
 
NC_011894  Mnod_0490  extracellular solute-binding protein family 5  26.4 
 
 
531 aa  112  2.0000000000000002e-23  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_1892  extracellular solute-binding protein  25.52 
 
 
547 aa  112  2.0000000000000002e-23  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.110335  n/a   
 
 
-
 
NC_010322  PputGB1_0928  extracellular solute-binding protein  24.84 
 
 
541 aa  112  2.0000000000000002e-23  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_16530  ABC-type dipeptide transport system, periplasmic component  25.63 
 
 
510 aa  112  2.0000000000000002e-23  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.564688 
 
 
-
 
NC_009708  YpsIP31758_1784  peptide ABC transporter, periplasmic peptide-binding protein  25.52 
 
 
547 aa  112  2.0000000000000002e-23  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_008061  Bcen_4203  extracellular solute-binding protein  26.59 
 
 
520 aa  112  2.0000000000000002e-23  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.237738  n/a   
 
 
-
 
NC_013421  Pecwa_2613  extracellular solute-binding protein family 5  25.54 
 
 
562 aa  112  2.0000000000000002e-23  Pectobacterium wasabiae WPP163  Bacteria  normal  0.0942045  n/a   
 
 
-
 
NC_009074  BURPS668_0402  peptide ABC transporter, periplasmic peptide-binding protein  24.78 
 
 
528 aa  112  2.0000000000000002e-23  Burkholderia pseudomallei 668  Bacteria  normal  0.882442  n/a   
 
 
-
 
NC_009668  Oant_4405  extracellular solute-binding protein  26.23 
 
 
532 aa  112  2.0000000000000002e-23  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_4163  extracellular solute-binding protein  26.59 
 
 
520 aa  112  2.0000000000000002e-23  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0633493  decreased coverage  0.00226863 
 
 
-
 
NC_009832  Spro_0973  extracellular solute-binding protein  25.76 
 
 
532 aa  112  2.0000000000000002e-23  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_009504  BOV_A0954  ABC transporter, periplasmic substrate-binding protein  23.87 
 
 
479 aa  111  3e-23  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_004311  BRA1012  ABC transporter, periplasmic substrate-binding protein  23.87 
 
 
492 aa  111  3e-23  Brucella suis 1330  Bacteria  normal  0.622148  n/a   
 
 
-
 
NC_008254  Meso_1313  extracellular solute-binding protein  27.95 
 
 
493 aa  111  3e-23  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_2342  extracellular solute-binding protein family 5  25.11 
 
 
580 aa  111  3e-23  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_2454  extracellular solute-binding protein  25.8 
 
 
528 aa  111  3e-23  Desulfotomaculum reducens MI-1  Bacteria  normal  0.269908  n/a   
 
 
-
 
NC_011894  Mnod_3653  extracellular solute-binding protein family 5  26.36 
 
 
513 aa  111  4.0000000000000004e-23  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0310608  n/a   
 
 
-
 
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