| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0844 |
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| Symbol | |
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| ID | 5108938 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 963018 |
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| End bp | 964613 |
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| Gene Length | 1596 bp |
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| Protein Length | 531 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640502060 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001186344 |
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| Protein GI | 146305879 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 50 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTACCC TGCCCCTCAA GCGCGGTGGC GTGCTGCTGG CCGCCCTGTT TGCTGCTCAG
GTCCAGGCGG CCAATCTGGT GGTGTGCAGC GAAGCCAGCC CGGAAGGTTT CGATATCGTC
CAGTACACCG CTGCCACCAC CGCCGACGCC ACGGCGGAAA CCCTGTTCGA ACGCCTGGTG
GCCTTCGCCC CCGGCAGCAC CGACATCGTT CCGGCGCTGG CGCAGAGCTG GGAAATCAGC
GATGACGGCC TGGGCTACAC CTTCACCCTG CGCGAGGGGG TGAAATTCCA CGCCAACAAG
GAATTCACGC CAAGCCGCAC CTTCAACGCC GACGACGTGC TGTGGAGCTT CCAGCGCCAG
CTCGACCCGA CGCATCCCTG GCACAAGCTG TCACTGCGCG GCTTCCCCTA CGCCGAGTCC
ATGGGTCTGG CGCAACTGAT CGAGCGCATC GAAAAGCTCG ACGAGCATCG CGTGCGCTTC
GTTCTGAAGC ATCCCGAGGC GCCCTTTCTG GCCAACCTGG CCATGGGCTT CGCCTCGATC
TACTCGGCCG AATACGCCGA GCATCTGCTC GCCAGCGGCA AGCCCGAGCG GCTGAACAAC
GCCCCCATCG GTACCGGCCC CTTCGTCTTC GAGCGCTACG CCAAGGACGC CCAGGTGCGC
TTTCGCGGCA ACCCGGACTA CTGGGACGGC GCACCGGCAA TCGAACGCCT GGTGCTGGCC
ATCACCCCCG AGCCCAACGT GCGCCAGCAA CGGCTCAAGG CCGGCGACTG CCAGATCGCC
CTCTACCCGC GGCCGGTGGA CATCCCGGCG CTCAAGGCCG ATCCGCAACT GCAGGTGCTG
GAGCTGGATT CGCTGCTGAC CGCCTACATC GGCATCAACA CCCGCCATCG GCCGCTGCAT
GACGTGCGCG TGCGCCAGGC GATCAACCTG GCGTTCGACA AGGCCGCCTA CATTCGCGCG
CAGTTTGGCG AGGGCAATGC CACGCCGGCC GTGGCGCCCT ACCCGGCGAC CCTGTGGGGG
CATGACGAAA CGCTGCAGGA CTGGCCGCAC GATCCCGAAC GGGCCCGCCA GCTGCTGGCC
GAGGCCGGTC ACGCCGATGG CTTCGCCCTG TCGATCTGGA CCCGTCCCGG TGGCGGTCCG
ACCAACCCCA ACCCCGGTAT CGGCGCGCAG ATGCTGCAGG CCGATCTCGC CGCCATCGGC
ATCCGCAGCG ACATTCGCGT GTTCGAGTGG GGCGAGCTGA TCAAGCGCGC CAAGAACGGC
GAGCACGATC TGGTGTTCAT GGGCTGGGCC GGCGACAACG GCGACCCGGA CAACTTCCTC
ACCCCCAACC TCTCCTGCGC CGCCGCCGAG AGCGGCGAGA ACCAGGCGGG CTGGTGCGAC
AAGGCCTTCG ATACGCTGAT CGCCCAGGCG CGCCGCGAGC CCCAGCAGGG CAAACGCGCC
GCACTGTATC GCCAGGCCCT GGCGATCTTT CACGAGCAGG CGCCGTGGAT CGCCCTGGCC
CATCCCAAGC AGTTCGCCGC GCTGCGCAAG GGCGTCGAAG GCTTCGTGCT CAGCCCGCTG
GGCTCGAACA ATTTCGCCAA GGTGAAAGTG CCATGA
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| Protein sequence | MSTLPLKRGG VLLAALFAAQ VQAANLVVCS EASPEGFDIV QYTAATTADA TAETLFERLV
AFAPGSTDIV PALAQSWEIS DDGLGYTFTL REGVKFHANK EFTPSRTFNA DDVLWSFQRQ
LDPTHPWHKL SLRGFPYAES MGLAQLIERI EKLDEHRVRF VLKHPEAPFL ANLAMGFASI
YSAEYAEHLL ASGKPERLNN APIGTGPFVF ERYAKDAQVR FRGNPDYWDG APAIERLVLA
ITPEPNVRQQ RLKAGDCQIA LYPRPVDIPA LKADPQLQVL ELDSLLTAYI GINTRHRPLH
DVRVRQAINL AFDKAAYIRA QFGEGNATPA VAPYPATLWG HDETLQDWPH DPERARQLLA
EAGHADGFAL SIWTRPGGGP TNPNPGIGAQ MLQADLAAIG IRSDIRVFEW GELIKRAKNG
EHDLVFMGWA GDNGDPDNFL TPNLSCAAAE SGENQAGWCD KAFDTLIAQA RREPQQGKRA
ALYRQALAIF HEQAPWIALA HPKQFAALRK GVEGFVLSPL GSNNFAKVKV P
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