| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_2161 |
|---|
| Symbol | |
|---|
| ID | 6289759 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | + |
|---|
| Start bp | 2274001 |
|---|
| End bp | 2275599 |
|---|
| Gene Length | 1599 bp |
|---|
| Protein Length | 532 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642625732 |
|---|
| Product | extracellular solute-binding protein family 5 |
|---|
| Protein accession | YP_001899727 |
|---|
| Protein GI | 187929240 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.283164 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAACCC GTCCCCTCTT GTGTGTTCCC ATCCGCGCCC TGATCCGCAA CCTCGCCACA
TGCGCGCTGG CTGCGGCTGC CGCGATGCCG TTCGCCGCAC AAGCCGACGA CCTCCGCATC
GGCCTGTCCG CCGACGTCAC GTCGATGGAC CCGCAATGGA ACAACGCCGG CCCCAACAAC
GCCATGGCGC TGCATATCTT CGAGTCGCTG GTCTTCCTCG ACAAGAACGG CCGCTACACG
CCCGGCCTGG CCACCTCGTG GAAGCCCGTC GACGCCAACA CATGGGAGAT CAAGCTGCGC
CCCAATGTGA AATGGAGCGA CGGCACGCCG TTCACCGGCG AAGACGTGAA GGCATCGATC
GAGCGTCCGG CGCGCCTGAC CAACAGCCCG GGCCCCTTCA CCAGCTATAC CAAGTCGATT
ACCGAAGTAC AGATCGTCGA TCCGCTGACG GTGCGGTTGA AGTTGTCGAC GCCCAATTAC
GCGAGCATCC CCAACGATCT GAACAGCCTG CCCATCATTC CGAAGAAGGT GGCCAACGCG
CCGCAGGCGG ACTTTGACGC GGGCCGCGCA ATGATCGGCA CGGGCCCGTT CCTGTTCGAC
CACTTTACGC GCGGGCAGGA AATCGTCCTG AAGAAGAACC CCCACTACTG GGGCCGCGTA
CCGCAGTGGG ACAAGGTGAC CTTCAAGATC ATCACCGACA ATGCGGCTCG CACAGCCGCA
CTGCTCTCCG GCGATGTGGA TGTCGTCGAG GCCGTACCGG CTGCGGACGT CCCGCGCATC
AAGCAGGACC CCAAGTTCCA CCTCGAACAG CAGGTGTCGT GGCGCACGAT TTTCTGGCAG
ATGGATCAGA GCCGCGATGT GTCGCCGTTC GTGACCGACA AGGCCGGCAA GCCGCTGGCC
AAGAACCCGC TCAAGGACCA TCGCGTGCGC GAGGCCATCG CGCTGGCCAT CAACCGCGAC
GCCATCGTCA GCCGCGTGCT CGAAGGCCAG GGCGTGGTGG CCTCGAGCAT CGTGTCACCG
CAGATCTTCG GGCACCCGGG CGGCAAGCCG ATCGCATATG ACCCAGCACG CGCCAAGAAA
CTGCTTGCCG AGGCCGGCTA TCCGGACGGC TTCGGGCTCA CGCTGCACGC CACCAACAAC
CGCTACCTGA ATGACGCGCA AGTCGCGCAA ACCACCGCGC AGCTGCTCAC GCGCATCGGC
ATCCAGACGA AGGTTGAAAC GTTGCCGGTG GCGGCGTATT TCTCGCGCGC GCGTCAGGGC
GAGTTCTCGT TCATGATGCT CGGCTGGGGC TCGGTGGCCG CCGATGTGGC GCTGCGCAGC
ATTCTCGGTA CGCCCAACGC GCAAACCGGC TACGGCTCGT GGAACTGGGG CCGCTACAGC
AACCCGGAAC TCGACAAACT GGTACAGACG TCGCTCTCAA CGGTCTCGAG CGAACAGGCA
CACGAGCAGG CTGCCAAAAC TGCGGCACGC TTTGCGCAGA CCGACTACGC GATCATCCCG
TCGCATCACC AACTAGCGAC GTGGGCCATG CGCAAGGGCA TCCGCTACGA GGCGCGCACT
GACGAATGGT CGCTCGCGTG GTTGTTCACC AAGCAATGA
|
|---|
| Protein sequence | MTTRPLLCVP IRALIRNLAT CALAAAAAMP FAAQADDLRI GLSADVTSMD PQWNNAGPNN
AMALHIFESL VFLDKNGRYT PGLATSWKPV DANTWEIKLR PNVKWSDGTP FTGEDVKASI
ERPARLTNSP GPFTSYTKSI TEVQIVDPLT VRLKLSTPNY ASIPNDLNSL PIIPKKVANA
PQADFDAGRA MIGTGPFLFD HFTRGQEIVL KKNPHYWGRV PQWDKVTFKI ITDNAARTAA
LLSGDVDVVE AVPAADVPRI KQDPKFHLEQ QVSWRTIFWQ MDQSRDVSPF VTDKAGKPLA
KNPLKDHRVR EAIALAINRD AIVSRVLEGQ GVVASSIVSP QIFGHPGGKP IAYDPARAKK
LLAEAGYPDG FGLTLHATNN RYLNDAQVAQ TTAQLLTRIG IQTKVETLPV AAYFSRARQG
EFSFMMLGWG SVAADVALRS ILGTPNAQTG YGSWNWGRYS NPELDKLVQT SLSTVSSEQA
HEQAAKTAAR FAQTDYAIIP SHHQLATWAM RKGIRYEART DEWSLAWLFT KQ
|
|---|
| |