| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3842 |
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| Symbol | |
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| ID | 5541346 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 5021678 |
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| End bp | 5023384 |
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| Gene Length | 1707 bp |
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| Protein Length | 568 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640895952 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001433897 |
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| Protein GI | 156743768 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0450891 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.108057 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGACC GATGCTCTGA TCAGGGAGAA CAAAAGGTGC GTCGAATCGA TCGGCGCGCG
TTCCTGCGTC TTGTGGCGGC AGGCGGAGGT GCGCTGGCAT TGCAGGCTTG CGGTGGCGGC
GCTCCACCCG CTGCTGCGCC GACGACCGCC CCCGCTGCAC CGACGGTTGC CCCGGCTGCG
CCGACGGCTG CTCCTGCCGC GCCGACGGCT GCTCCTGCCG CGCCGACGGC TGCACCCGTT
GCATCGAACG CGCGCGGAGG CAAAGTCACC TGGGCGATGC TTGGTGATCC GGTGTCGCTC
GAACCATACG GAATCAACAT CACGGGCCAG TACAATTACG AAGCGCGCGA GCCGATGTAT
GACTCGCTGC TCGTGTGGGA TCGCGATCTG AAAGTACAGC CATCGCTGGC AGAGTCGTTC
GAGACGCCGG ACGATACGAC CTATATCTTC AATCTGCGTT CGGGCGTGAA ATTCCACAAC
GGCAGGGAAC TCACCGCCGA GGATGTCAAA TTCTCGCTCG ATACCATCAT CAATCCGCCT
GACGGACGCA ACCCCGGTGC AGCATTCTTC GCCAATTTCG ACACGATTGA GGTCGTTGAC
CCATTGACGA TTCGCATCAA TCTGAAGAAA ATCGACCCGA CCATTCCTGG GTTGTTCGCC
TGGTCGCGCT ATACAAACAT CTTTCCCACC GACATGCCGT CGCAGATCAA TCCCGTGACC
CAGGCGATCG GCACCGGTCC CTTCCGATTG GTCAGTTATA CGCCCAACGC CGAAATCGTC
TATGAGCGCT TCTCCGATCA CTGGAACCCC GAACAGCCGA ACATCGATCA ATTGATCTAT
CGCGTCATCC CTGAGGAAGA TGCCCGCATT GCGGCACTGC GCTCCGGCGA TATCGACGGG
ACGGACGTTA CGCCGTTAGG TGCGCGGCGA CTCCAGAACG ACTCCGACAT CACCATTCTG
AAAGGTCTCT ACTCGCAGCC GAAGGTGCTT CAGTTTACAC TGAAGGGCGG GAAACCGTGG
GACATCAAAG AAGTGCGCCA GGCGATCAGT CTGACCATCG ACCGCCAGGA ACTGATCGAC
AAGGTGATGG AAGGCGAGGC GGAACTGACG GGACCGGTCG TGCCCGGCTA TGGCGACTGG
CCCCTCAGCC AGGATGAACT GCGCGCCGCG TACCAGGTTG ATGTCGAAAA GGCGCGCCAG
TTAATGGCGC AAGCCGGTTA TGCCGACGGC TTCAAGGTGA CGGCGATGAC CTTCGCCAAC
TACTCGAACG ATAATGCCAT CATTGTACAG GAACAACTGC GCCAGTTGAA CATCGACATG
CAGATTGAAC AGATCGAGTT TGGCACATTC GCGCAGCGCG TCACCAATGG CGAGTTCGAG
TGGTGCTTTA CGGCGCGCGG CATGCGCGCC GACGTGAGCG GATACCTGAA CGACTTCCGT
CGTCTGGGCA TTGCCGAGAA GAACTGGTTT CCCGCCTGGG AGAACGCTGA GCTTAATGAG
GCGTATGATG CAGCAATGGC GACGTTCGAT CAGGCAAAAC GACGCGAATT GATGCAGAAA
GTGCAGCGCA TCGTCATTAA TGAAGCGCCA CACATCTATC TCTACCAGGA CTACCGTTTC
TCGGCGGTTC GGAAGCGGGT GCAGAATTAC TACGTCGCCT TCACGACGTT CCGCCCCGCG
CTGCGCGAAA TCTTTGTGAC CGCGTAA
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| Protein sequence | MNDRCSDQGE QKVRRIDRRA FLRLVAAGGG ALALQACGGG APPAAAPTTA PAAPTVAPAA
PTAAPAAPTA APAAPTAAPV ASNARGGKVT WAMLGDPVSL EPYGINITGQ YNYEAREPMY
DSLLVWDRDL KVQPSLAESF ETPDDTTYIF NLRSGVKFHN GRELTAEDVK FSLDTIINPP
DGRNPGAAFF ANFDTIEVVD PLTIRINLKK IDPTIPGLFA WSRYTNIFPT DMPSQINPVT
QAIGTGPFRL VSYTPNAEIV YERFSDHWNP EQPNIDQLIY RVIPEEDARI AALRSGDIDG
TDVTPLGARR LQNDSDITIL KGLYSQPKVL QFTLKGGKPW DIKEVRQAIS LTIDRQELID
KVMEGEAELT GPVVPGYGDW PLSQDELRAA YQVDVEKARQ LMAQAGYADG FKVTAMTFAN
YSNDNAIIVQ EQLRQLNIDM QIEQIEFGTF AQRVTNGEFE WCFTARGMRA DVSGYLNDFR
RLGIAEKNWF PAWENAELNE AYDAAMATFD QAKRRELMQK VQRIVINEAP HIYLYQDYRF
SAVRKRVQNY YVAFTTFRPA LREIFVTA
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