Gene YpsIP31758_1784 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYpsIP31758_1784 
SymbolsapA 
ID5385776 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis IP 31758 
KingdomBacteria 
Replicon accessionNC_009708 
Strand
Start bp2061507 
End bp2063150 
Gene Length1644 bp 
Protein Length547 aa 
Translation table11 
GC content49% 
IMG OID640864767 
Productpeptide ABC transporter, periplasmic peptide-binding protein 
Protein accessionYP_001400759 
Protein GI153947401 
COG category[E] Amino acid transport and metabolism 
COG ID[COG4166] ABC-type oligopeptide transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones46 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGTGGTT TACTGATTTT GCTGTTGTCG CTGATTTGCC TTGCAACCCC TGTGCTGGCA 
CAACCTGTTG CAGCGGAGCA ACCGCTACCG GATATCCGTC AGCGCGGATT TGTCTATTGT
GTCAGTGGGA TACTCAACAC ATTTAACCCC CAAATGGCCA GTAGCGGTTT AACCGTCGAT
ACACTTGCAG CACAACTCTA TGACCGTCTA CTGGATGTTG ACCCCTATAC CTACCGGTTA
ATCCCAGAAC TGGCGGAAAG TTGGCAAGTT CTGGATAACG GCGCAACCTA CCGTTTTCAT
TTACGTAAAG ATGTGCCATT TCAGACTACC GACTGGTTTA CGCCTACGCG GATGATGAAC
GCCGATGATG TGGTCTTCAG TTTTCAGCGA GTATTTGACT CAAAGCATCC GTACCACAAG
GTCAACGGCG GAGAGTACCC CTACTTTGAT AGTTTGCAGT TTGCAAGCGC CGTAAAAAGC
GTAAAAAAAT TGGATGATTA CACCGTTGAA TTTAAGCTAA AAGCCCCAGA TGCGTCGTTT
CTTTGGCATT TAGCAACTCA TTACGCCCCC GTATTGTCTT CAGAATACGC CGATGTCCTG
ACCCAGAAAG GGAAGGAAGA ACAGATTGAC CGTGAGCCAG TCGGGACCGG GCCTTTTCTA
TTGGATGAAT ATCGTTCTGG GCAATATATC CGCTTGTTCC GCAACAGCCA CTATTGGAAA
GGTGTGCCAC GTATGCCACA GGTGGTTATC GACTTAGGGG TCGGTGGAAC GGGGCGTTTA
TCAAAACTGT TGACCGGAGA GTGTGATGTG CTGGCCTATC CCGCCGCCAG CCAATTATCT
ATTTTACGTG ATGACCCACG CCTACGCCTG ACACTGCGCC CAGGGATGAA CGTCGCCTAT
CTCGCCTTCA ATACCCGCAA GCCCCCGTTA AGTGATCAAC GGGTTCGCCA AGCGATCGCT
TTGTCGATCA ATAACCAACG ATTGATGCAA TCAATCTATT ACGGCACAGC TGAAACGGCA
GCCTCTATTT TACCTAGAGC ATCATGGGCT TATGATAATC AGGCGCAGGT GACCGAATAT
AATCCGGAAA AAGCCAAAGA GATCCTCAAA GATTTGGGGA TAACCCAACT GCAACTTAAC
TTATGGGTCC CTACTGCATC GCAATCTTAT AATCCTAGCC CATTGAAAAC TGCTGAATTG
ATCCAAGCGG ATTTAGCACA AGTGGGGATT TCCGTCACTA TTGTTCCCGT CGAGGGCCGT
TTCCAAGAGG CCCGTCTGAT GGAGATGAAC CACGATCTGA CACTTTCCGG TTGGTCTACT
GACAGTAATG ACCCCGACAG TTTCTTCCGG CCATTATTAA GCTGTGCAGC AATTCGTTCG
CAAACAAACT ATGCTCACTG GTGTGATCCG GCCTTTGATG AATTACTGCA AAAGGCATTA
CGTTCCCAAC AATTATCGGA GCGTATTGAG TATTATCAGC AGGCTCAGCG TATTCTGGAG
CAACAATTGC CGTTACTGCC ACTGGCATCG TCCCTGCGGC TTCAGGCATA CCGTTATGAC
ATTAAAGGCT TGGTATTAAG CCCGTTCGGT AACTCTTCTT TCGCCGGTGT ATACCGCGAA
AGCGATGAGG GCAAGACGCC ATGA
 
Protein sequence
MRGLLILLLS LICLATPVLA QPVAAEQPLP DIRQRGFVYC VSGILNTFNP QMASSGLTVD 
TLAAQLYDRL LDVDPYTYRL IPELAESWQV LDNGATYRFH LRKDVPFQTT DWFTPTRMMN
ADDVVFSFQR VFDSKHPYHK VNGGEYPYFD SLQFASAVKS VKKLDDYTVE FKLKAPDASF
LWHLATHYAP VLSSEYADVL TQKGKEEQID REPVGTGPFL LDEYRSGQYI RLFRNSHYWK
GVPRMPQVVI DLGVGGTGRL SKLLTGECDV LAYPAASQLS ILRDDPRLRL TLRPGMNVAY
LAFNTRKPPL SDQRVRQAIA LSINNQRLMQ SIYYGTAETA ASILPRASWA YDNQAQVTEY
NPEKAKEILK DLGITQLQLN LWVPTASQSY NPSPLKTAEL IQADLAQVGI SVTIVPVEGR
FQEARLMEMN HDLTLSGWST DSNDPDSFFR PLLSCAAIRS QTNYAHWCDP AFDELLQKAL
RSQQLSERIE YYQQAQRILE QQLPLLPLAS SLRLQAYRYD IKGLVLSPFG NSSFAGVYRE
SDEGKTP