More than 300 homologs were found in PanDaTox collection
for query gene Jden_0748 on replicon NC_013174
Organism: Jonesia denitrificans DSM 20603



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013521  Sked_26380  GTP-binding protein YchF  88.09 
 
 
361 aa  638    Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.0845459 
 
 
-
 
NC_013174  Jden_0748  GTP-dependent nucleic acid-binding protein EngD  100 
 
 
369 aa  737    Jonesia denitrificans DSM 20603  Bacteria  normal  normal 
 
 
-
 
NC_013530  Xcel_0946  GTP-binding protein YchF  81.99 
 
 
361 aa  591  1e-168  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_1105  GTP-dependent nucleic acid-binding protein EngD  77.29 
 
 
361 aa  557  1e-157  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.692178 
 
 
-
 
NC_014151  Cfla_0977  GTP-binding protein YchF  80.66 
 
 
358 aa  552  1e-156  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.245774  hitchhiker  0.00114943 
 
 
-
 
NC_013172  Bfae_22930  GTP-dependent nucleic acid-binding protein EngD  73.82 
 
 
361 aa  538  9.999999999999999e-153  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_2831  GTP-dependent nucleic acid-binding protein EngD  72.95 
 
 
368 aa  527  1e-148  Arthrobacter sp. FB24  Bacteria  normal  0.593989  n/a   
 
 
-
 
NC_011886  Achl_2546  GTP-dependent nucleic acid-binding protein EngD  72.93 
 
 
363 aa  519  1e-146  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.000002151 
 
 
-
 
NC_013131  Caci_8269  GTP-dependent nucleic acid-binding protein EngD  70.91 
 
 
357 aa  518  1e-146  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_1095  GTP-binding protein YchF  72.73 
 
 
363 aa  516  1.0000000000000001e-145  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0537245  n/a   
 
 
-
 
NC_013595  Sros_8476  GTP-binding protein YchF  70.72 
 
 
362 aa  515  1.0000000000000001e-145  Streptosporangium roseum DSM 43021  Bacteria  normal  0.775953  normal 
 
 
-
 
NC_014210  Ndas_0133  GTP-binding protein YchF  71.7 
 
 
361 aa  512  1e-144  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013169  Ksed_20210  GTP-dependent nucleic acid-binding protein EngD  72.3 
 
 
361 aa  504  9.999999999999999e-143  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.640353  normal  0.191287 
 
 
-
 
NC_009953  Sare_4160  GTP-dependent nucleic acid-binding protein EngD  70.91 
 
 
361 aa  504  9.999999999999999e-143  Salinispora arenicola CNS-205  Bacteria  normal  decreased coverage  0.000134834 
 
 
-
 
NC_007333  Tfu_0473  GTP-dependent nucleic acid-binding protein EngD  69.51 
 
 
364 aa  501  1e-141  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_009380  Strop_3781  GTP-dependent nucleic acid-binding protein EngD  70.08 
 
 
361 aa  501  1e-141  Salinispora tropica CNB-440  Bacteria  normal  normal  0.699286 
 
 
-
 
NC_009664  Krad_1124  GTP-dependent nucleic acid-binding protein EngD  72.02 
 
 
361 aa  498  1e-140  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.356013 
 
 
-
 
NC_014165  Tbis_3062  GTP-binding protein YchF  69.61 
 
 
362 aa  495  1e-139  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_014158  Tpau_3101  GTP-binding protein YchF  72.02 
 
 
357 aa  496  1e-139  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_31400  GTP-dependent nucleic acid-binding protein EngD  70.8 
 
 
360 aa  492  9.999999999999999e-139  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.292075 
 
 
-
 
NC_013721  HMPREF0424_0648  GTP-binding protein YchF  65.75 
 
 
362 aa  490  1e-137  Gardnerella vaginalis 409-05  Bacteria  n/a    normal  0.379901 
 
 
-
 
NC_012803  Mlut_16190  GTP-dependent nucleic acid-binding protein EngD  73.73 
 
 
354 aa  488  1e-137  Micrococcus luteus NCTC 2665  Bacteria  normal  0.938895  n/a   
 
 
-
 
NC_010816  BLD_0667  GTP-dependent nucleic acid-binding protein EngD  67.13 
 
 
364 aa  486  1e-136  Bifidobacterium longum DJO10A  Bacteria  normal  0.416643  n/a   
 
 
-
 
NC_008699  Noca_1080  GTP-dependent nucleic acid-binding protein EngD  70.72 
 
 
359 aa  486  1e-136  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_013757  Gobs_1033  GTP-binding protein YchF  71.75 
 
 
357 aa  484  1e-135  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_5521  GTP-binding protein YchF  67.78 
 
 
358 aa  484  1e-135  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.633913  normal  0.842427 
 
 
-
 
NC_013093  Amir_0736  GTP-dependent nucleic acid-binding protein EngD  71.55 
 
 
359 aa  484  1e-135  Actinosynnema mirum DSM 43827  Bacteria  normal  0.217905  n/a   
 
 
-
 
NC_008578  Acel_1861  GTP-dependent nucleic acid-binding protein EngD  65.75 
 
 
373 aa  481  1e-135  Acidothermus cellulolyticus 11B  Bacteria  normal  normal  0.924801 
 
 
-
 
NC_009338  Mflv_2082  GTP-dependent nucleic acid-binding protein EngD  70.36 
 
 
360 aa  479  1e-134  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.330246  normal  0.125841 
 
 
-
 
NC_013441  Gbro_3392  GTP-binding protein YchF  69.81 
 
 
359 aa  479  1e-134  Gordonia bronchialis DSM 43247  Bacteria  normal  0.180575  n/a   
 
 
-
 
NC_013235  Namu_4365  GTP-dependent nucleic acid-binding protein EngD  70.08 
 
 
359 aa  476  1e-133  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_4625  GTP-dependent nucleic acid-binding protein EngD  69.81 
 
 
360 aa  475  1e-133  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.54824  normal 
 
 
-
 
NC_009921  Franean1_0857  GTP-dependent nucleic acid-binding protein EngD  66.76 
 
 
358 aa  471  1e-132  Frankia sp. EAN1pec  Bacteria  normal  0.0266679  normal  0.117665 
 
 
-
 
NC_007777  Francci3_3871  GTP-dependent nucleic acid-binding protein EngD  67.59 
 
 
358 aa  471  1.0000000000000001e-131  Frankia sp. CcI3  Bacteria  normal  0.479028  normal 
 
 
-
 
NC_009077  Mjls_4333  GTP-dependent nucleic acid-binding protein EngD  68.25 
 
 
376 aa  466  9.999999999999999e-131  Mycobacterium sp. JLS  Bacteria  normal  normal  0.567593 
 
 
-
 
NC_008146  Mmcs_4102  GTP-dependent nucleic acid-binding protein EngD  68.52 
 
 
376 aa  468  9.999999999999999e-131  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_4178  GTP-dependent nucleic acid-binding protein EngD  68.52 
 
 
376 aa  468  9.999999999999999e-131  Mycobacterium sp. KMS  Bacteria  normal  0.40111  normal 
 
 
-
 
NC_009565  TBFG_11134  GTP-dependent nucleic acid-binding protein EngD  65.37 
 
 
357 aa  437  1e-121  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_013170  Ccur_11960  GTP-binding protein YchF  58.79 
 
 
354 aa  396  1e-109  Cryptobacterium curtum DSM 15641  Bacteria  normal  0.642415  normal 
 
 
-
 
NC_013203  Apar_0186  GTP-binding protein YchF  56.01 
 
 
354 aa  393  1e-108  Atopobium parvulum DSM 20469  Bacteria  normal  normal  0.448936 
 
 
-
 
NC_007520  Tcr_0395  GTP-dependent nucleic acid-binding protein EngD  53.66 
 
 
363 aa  383  1e-105  Thiomicrospira crunogena XCL-2  Bacteria  hitchhiker  0.00186596  n/a   
 
 
-
 
NC_013204  Elen_1055  GTP-binding protein YchF  56.32 
 
 
354 aa  382  1e-105  Eggerthella lenta DSM 2243  Bacteria  normal  0.0763151  hitchhiker  0.00159487 
 
 
-
 
NC_007947  Mfla_0675  GTP-dependent nucleic acid-binding protein EngD  55.71 
 
 
361 aa  384  1e-105  Methylobacillus flagellatus KT  Bacteria  normal  0.762559  normal 
 
 
-
 
NC_013173  Dbac_0442  GTP-binding protein YchF  54.28 
 
 
366 aa  384  1e-105  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.637193  n/a   
 
 
-
 
NC_006369  lpl2579  GTP-dependent nucleic acid-binding protein EngD  54.08 
 
 
363 aa  379  1e-104  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_007204  Psyc_0894  GTP-dependent nucleic acid-binding protein EngD  53.66 
 
 
363 aa  380  1e-104  Psychrobacter arcticus 273-4  Bacteria  normal  normal  0.943704 
 
 
-
 
NC_007969  Pcryo_1524  GTP-dependent nucleic acid-binding protein EngD  53.66 
 
 
363 aa  379  1e-104  Psychrobacter cryohalolentis K5  Bacteria  normal  normal 
 
 
-
 
NC_011138  MADE_02583  GTP-dependent nucleic acid-binding protein EngD  52.19 
 
 
363 aa  377  1e-103  Alteromonas macleodii 'Deep ecotype'  Bacteria  hitchhiker  0.0000898424  n/a   
 
 
-
 
NC_002976  SERP0041  GTP-dependent nucleic acid-binding protein EngD  52.16 
 
 
365 aa  375  1e-103  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_3547  GTP-dependent nucleic acid-binding protein EngD  52.29 
 
 
366 aa  375  1e-103  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_006368  lpp2707  GTP-dependent nucleic acid-binding protein EngD  53.8 
 
 
363 aa  377  1e-103  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_008025  Dgeo_1574  GTP-dependent nucleic acid-binding protein EngD  56.06 
 
 
365 aa  377  1e-103  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal  0.796627 
 
 
-
 
NC_008740  Maqu_2368  GTP-dependent nucleic acid-binding protein EngD  53.53 
 
 
363 aa  377  1e-103  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_1647  GTP-dependent nucleic acid-binding protein EngD  54.3 
 
 
366 aa  376  1e-103  Desulfovibrio vulgaris DP4  Bacteria  normal  0.429909  normal  0.918011 
 
 
-
 
NC_010524  Lcho_0271  GTP-binding protein YchF  55.16 
 
 
364 aa  372  1e-102  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.198016 
 
 
-
 
NC_009079  BMA10247_A1923  GTP-dependent nucleic acid-binding protein EngD  54.62 
 
 
364 aa  372  1e-102  Burkholderia mallei NCTC 10247  Bacteria  normal  0.264442  n/a   
 
 
-
 
NC_009253  Dred_1280  GTP-binding protein YchF  52.85 
 
 
367 aa  371  1e-102  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_006349  BMAA0519  GTP-dependent nucleic acid-binding protein EngD  54.62 
 
 
364 aa  372  1e-102  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_3587  GTP-dependent nucleic acid-binding protein EngD  54.62 
 
 
364 aa  372  1e-102  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_0952  GTP-dependent nucleic acid-binding protein EngD  54.62 
 
 
364 aa  372  1e-102  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_0530  GTP-dependent nucleic acid-binding protein EngD  52.85 
 
 
363 aa  374  1e-102  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_008784  BMASAVP1_0657  GTP-dependent nucleic acid-binding protein EngD  54.62 
 
 
364 aa  372  1e-102  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_3569  GTP-dependent nucleic acid-binding protein EngD  54.62 
 
 
364 aa  372  1e-102  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_013165  Shel_21870  GTP-binding protein YchF  54.62 
 
 
354 aa  371  1e-102  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal  0.0475417 
 
 
-
 
NC_008390  Bamb_0429  GTP-dependent nucleic acid-binding protein EngD  54.86 
 
 
364 aa  372  1e-102  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_010551  BamMC406_0453  GTP-dependent nucleic acid-binding protein EngD  54.86 
 
 
364 aa  372  1e-102  Burkholderia ambifaria MC40-6  Bacteria  normal  0.660955  normal  0.0338644 
 
 
-
 
NC_009076  BURPS1106A_3596  GTP-dependent nucleic acid-binding protein EngD  54.62 
 
 
364 aa  372  1e-102  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_010531  Pnec_0155  GTP-binding protein YchF  54.35 
 
 
364 aa  369  1e-101  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  0.611358  normal  0.940592 
 
 
-
 
NC_010084  Bmul_2871  GTP-dependent nucleic acid-binding protein EngD  55.14 
 
 
364 aa  369  1e-101  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.103234  normal  0.491395 
 
 
-
 
NC_009524  PsycPRwf_1909  GTP-dependent nucleic acid-binding protein EngD  53.68 
 
 
363 aa  370  1e-101  Psychrobacter sp. PRwf-1  Bacteria  normal  0.186477  normal 
 
 
-
 
NC_013889  TK90_0348  GTP-binding protein YchF  53.39 
 
 
364 aa  370  1e-101  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.214484 
 
 
-
 
NC_006055  Mfl660  GTP-dependent nucleic acid-binding protein EngD  50.14 
 
 
364 aa  368  1e-101  Mesoplasma florum L1  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_0390  GTP-dependent nucleic acid-binding protein EngD  54.5 
 
 
363 aa  369  1e-101  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.997224  normal  0.0213751 
 
 
-
 
NC_009487  SaurJH9_0411  GTP-dependent nucleic acid-binding protein EngD  52.29 
 
 
365 aa  370  1e-101  Staphylococcus aureus subsp. aureus JH9  Bacteria  hitchhiker  0.00200515  n/a   
 
 
-
 
NC_007651  BTH_I2920  GTP-dependent nucleic acid-binding protein EngD  54.08 
 
 
364 aa  369  1e-101  Burkholderia thailandensis E264  Bacteria  normal  0.657058  n/a   
 
 
-
 
NC_010508  Bcenmc03_0496  GTP-dependent nucleic acid-binding protein EngD  54.86 
 
 
364 aa  371  1e-101  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008060  Bcen_2581  GTP-dependent nucleic acid-binding protein EngD  54.86 
 
 
364 aa  371  1e-101  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_2571  GTP-dependent nucleic acid-binding protein EngD  51.65 
 
 
363 aa  370  1e-101  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_008309  HS_0503  GTP-dependent nucleic acid-binding protein EngD  52.17 
 
 
363 aa  370  1e-101  Haemophilus somnus 129PT  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_4015  GTP-dependent nucleic acid-binding protein EngD  50.67 
 
 
366 aa  368  1e-101  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.362655  n/a   
 
 
-
 
NC_010001  Cphy_2482  GTP-binding protein YchF  51.9 
 
 
365 aa  371  1e-101  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_009632  SaurJH1_0422  GTP-dependent nucleic acid-binding protein EngD  52.29 
 
 
365 aa  370  1e-101  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.0242427  n/a   
 
 
-
 
NC_008542  Bcen2424_0524  GTP-dependent nucleic acid-binding protein EngD  54.86 
 
 
364 aa  371  1e-101  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_3418  GTP-dependent nucleic acid-binding protein EngD  52.02 
 
 
366 aa  370  1e-101  Geobacillus sp. WCH70  Bacteria  decreased coverage  0.0000000016062  n/a   
 
 
-
 
NC_011725  BCB4264_A5602  GTP-dependent nucleic acid-binding protein EngD  50.81 
 
 
366 aa  366  1e-100  Bacillus cereus B4264  Bacteria  normal  0.0104876  n/a   
 
 
-
 
NC_010622  Bphy_2708  GTP-dependent nucleic acid-binding protein EngD  54.08 
 
 
364 aa  366  1e-100  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007498  Pcar_2000  GTP-dependent nucleic acid-binding protein EngD  52.85 
 
 
364 aa  365  1e-100  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.0365484  n/a   
 
 
-
 
NC_007510  Bcep18194_A3611  GTP-dependent nucleic acid-binding protein EngD  54.59 
 
 
364 aa  367  1e-100  Burkholderia sp. 383  Bacteria  normal  normal  0.850292 
 
 
-
 
NC_007577  PMT9312_1234  GTP-dependent nucleic acid-binding protein EngD  51.75 
 
 
363 aa  367  1e-100  Prochlorococcus marinus str. MIT 9312  Bacteria  normal  0.909233  n/a   
 
 
-
 
NC_009654  Mmwyl1_3607  GTP-dependent nucleic acid-binding protein EngD  50.82 
 
 
363 aa  365  1e-100  Marinomonas sp. MWYL1  Bacteria  hitchhiker  0.000140673  normal  0.0364167 
 
 
-
 
NC_010320  Teth514_2022  GTP-dependent nucleic acid-binding protein EngD  52.16 
 
 
363 aa  367  1e-100  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_1008  GTP-dependent nucleic acid-binding protein EngD  52.47 
 
 
363 aa  366  1e-100  Shewanella sp. MR-4  Bacteria  hitchhiker  0.000000208433  normal  0.179939 
 
 
-
 
NC_008322  Shewmr7_1073  GTP-dependent nucleic acid-binding protein EngD  52.47 
 
 
363 aa  366  1e-100  Shewanella sp. MR-7  Bacteria  unclonable  0.00000596539  normal  0.137935 
 
 
-
 
NC_008345  Sfri_0717  GTP-dependent nucleic acid-binding protein EngD  52.85 
 
 
363 aa  365  1e-100  Shewanella frigidimarina NCIMB 400  Bacteria  decreased coverage  0.000164209  n/a   
 
 
-
 
NC_008577  Shewana3_1012  GTP-dependent nucleic acid-binding protein EngD  52.47 
 
 
363 aa  366  1e-100  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.00042531  normal  0.0638456 
 
 
-
 
NC_013501  Rmar_0027  GTP-binding protein YchF  52.3 
 
 
366 aa  364  1e-99  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_3096  GTP-binding protein YchF  54.45 
 
 
367 aa  364  1e-99  Opitutus terrae PB90-1  Bacteria  normal  normal  0.156001 
 
 
-
 
NC_007347  Reut_A3037  GTP-dependent nucleic acid-binding protein EngD  54.08 
 
 
387 aa  364  1e-99  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_3140  GTP-dependent nucleic acid-binding protein EngD  53.74 
 
 
364 aa  364  1e-99  Ralstonia pickettii 12J  Bacteria  normal  0.48249  normal  0.369877 
 
 
-
 
NC_008340  Mlg_0286  GTP-binding protein YchF  52.99 
 
 
363 aa  364  1e-99  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal  0.79515 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>