More than 300 homologs were found in PanDaTox collection
for query gene Noca_1080 on replicon NC_008699
Organism: Nocardioides sp. JS614



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008699  Noca_1080  GTP-dependent nucleic acid-binding protein EngD  100 
 
 
359 aa  719    Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_8269  GTP-dependent nucleic acid-binding protein EngD  72.91 
 
 
357 aa  522  1e-147  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_0133  GTP-binding protein YchF  73.9 
 
 
361 aa  520  1e-146  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_1095  GTP-binding protein YchF  73.9 
 
 
363 aa  513  1e-144  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0537245  n/a   
 
 
-
 
NC_013521  Sked_26380  GTP-binding protein YchF  72.65 
 
 
361 aa  508  1e-143  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.0845459 
 
 
-
 
NC_013595  Sros_8476  GTP-binding protein YchF  71.63 
 
 
362 aa  507  9.999999999999999e-143  Streptosporangium roseum DSM 43021  Bacteria  normal  0.775953  normal 
 
 
-
 
NC_007333  Tfu_0473  GTP-dependent nucleic acid-binding protein EngD  71.23 
 
 
364 aa  506  9.999999999999999e-143  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_014151  Cfla_0977  GTP-binding protein YchF  72.42 
 
 
358 aa  494  1e-139  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.245774  hitchhiker  0.00114943 
 
 
-
 
NC_013159  Svir_31400  GTP-dependent nucleic acid-binding protein EngD  68.61 
 
 
360 aa  494  1e-139  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.292075 
 
 
-
 
NC_013174  Jden_0748  GTP-dependent nucleic acid-binding protein EngD  70.72 
 
 
369 aa  493  9.999999999999999e-139  Jonesia denitrificans DSM 20603  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_22930  GTP-dependent nucleic acid-binding protein EngD  69.72 
 
 
361 aa  491  1e-137  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_0946  GTP-binding protein YchF  69.61 
 
 
361 aa  488  1e-137  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_3062  GTP-binding protein YchF  70.8 
 
 
362 aa  489  1e-137  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_008578  Acel_1861  GTP-dependent nucleic acid-binding protein EngD  67.12 
 
 
373 aa  488  1e-137  Acidothermus cellulolyticus 11B  Bacteria  normal  normal  0.924801 
 
 
-
 
NC_013093  Amir_0736  GTP-dependent nucleic acid-binding protein EngD  70.83 
 
 
359 aa  485  1e-136  Actinosynnema mirum DSM 43827  Bacteria  normal  0.217905  n/a   
 
 
-
 
NC_008541  Arth_2831  GTP-dependent nucleic acid-binding protein EngD  70.17 
 
 
368 aa  486  1e-136  Arthrobacter sp. FB24  Bacteria  normal  0.593989  n/a   
 
 
-
 
NC_011886  Achl_2546  GTP-dependent nucleic acid-binding protein EngD  69.89 
 
 
363 aa  482  1e-135  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.000002151 
 
 
-
 
NC_013947  Snas_5521  GTP-binding protein YchF  69.19 
 
 
358 aa  478  1e-134  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.633913  normal  0.842427 
 
 
-
 
NC_013757  Gobs_1033  GTP-binding protein YchF  70.67 
 
 
357 aa  479  1e-134  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_009380  Strop_3781  GTP-dependent nucleic acid-binding protein EngD  68.51 
 
 
361 aa  479  1e-134  Salinispora tropica CNB-440  Bacteria  normal  normal  0.699286 
 
 
-
 
NC_013441  Gbro_3392  GTP-binding protein YchF  68.33 
 
 
359 aa  481  1e-134  Gordonia bronchialis DSM 43247  Bacteria  normal  0.180575  n/a   
 
 
-
 
NC_012669  Bcav_1105  GTP-dependent nucleic acid-binding protein EngD  68.23 
 
 
361 aa  476  1e-133  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.692178 
 
 
-
 
NC_012803  Mlut_16190  GTP-dependent nucleic acid-binding protein EngD  72.55 
 
 
354 aa  473  1e-132  Micrococcus luteus NCTC 2665  Bacteria  normal  0.938895  n/a   
 
 
-
 
NC_009953  Sare_4160  GTP-dependent nucleic acid-binding protein EngD  68.51 
 
 
361 aa  473  1e-132  Salinispora arenicola CNS-205  Bacteria  normal  decreased coverage  0.000134834 
 
 
-
 
NC_009664  Krad_1124  GTP-dependent nucleic acid-binding protein EngD  68.23 
 
 
361 aa  474  1e-132  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.356013 
 
 
-
 
NC_014158  Tpau_3101  GTP-binding protein YchF  68.16 
 
 
357 aa  471  1e-132  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_4365  GTP-dependent nucleic acid-binding protein EngD  70.28 
 
 
359 aa  471  1e-132  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013721  HMPREF0424_0648  GTP-binding protein YchF  64.74 
 
 
362 aa  470  1.0000000000000001e-131  Gardnerella vaginalis 409-05  Bacteria  n/a    normal  0.379901 
 
 
-
 
NC_013169  Ksed_20210  GTP-dependent nucleic acid-binding protein EngD  69.06 
 
 
361 aa  467  9.999999999999999e-131  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.640353  normal  0.191287 
 
 
-
 
NC_009921  Franean1_0857  GTP-dependent nucleic acid-binding protein EngD  68.25 
 
 
358 aa  465  9.999999999999999e-131  Frankia sp. EAN1pec  Bacteria  normal  0.0266679  normal  0.117665 
 
 
-
 
NC_009338  Mflv_2082  GTP-dependent nucleic acid-binding protein EngD  67.88 
 
 
360 aa  466  9.999999999999999e-131  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.330246  normal  0.125841 
 
 
-
 
NC_007777  Francci3_3871  GTP-dependent nucleic acid-binding protein EngD  68.52 
 
 
358 aa  464  1e-129  Frankia sp. CcI3  Bacteria  normal  0.479028  normal 
 
 
-
 
NC_008146  Mmcs_4102  GTP-dependent nucleic acid-binding protein EngD  67.32 
 
 
376 aa  455  1e-127  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_4333  GTP-dependent nucleic acid-binding protein EngD  67.32 
 
 
376 aa  454  1e-127  Mycobacterium sp. JLS  Bacteria  normal  normal  0.567593 
 
 
-
 
NC_008705  Mkms_4178  GTP-dependent nucleic acid-binding protein EngD  67.32 
 
 
376 aa  455  1e-127  Mycobacterium sp. KMS  Bacteria  normal  0.40111  normal 
 
 
-
 
NC_008726  Mvan_4625  GTP-dependent nucleic acid-binding protein EngD  67.32 
 
 
360 aa  454  1e-127  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.54824  normal 
 
 
-
 
NC_010816  BLD_0667  GTP-dependent nucleic acid-binding protein EngD  62.64 
 
 
364 aa  442  1e-123  Bifidobacterium longum DJO10A  Bacteria  normal  0.416643  n/a   
 
 
-
 
NC_009565  TBFG_11134  GTP-dependent nucleic acid-binding protein EngD  66.48 
 
 
357 aa  438  9.999999999999999e-123  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_002976  SERP0041  GTP-dependent nucleic acid-binding protein EngD  55.53 
 
 
365 aa  394  1e-108  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_013203  Apar_0186  GTP-binding protein YchF  57.06 
 
 
354 aa  394  1e-108  Atopobium parvulum DSM 20469  Bacteria  normal  normal  0.448936 
 
 
-
 
NC_009632  SaurJH1_0422  GTP-dependent nucleic acid-binding protein EngD  54.89 
 
 
365 aa  389  1e-107  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.0242427  n/a   
 
 
-
 
NC_009487  SaurJH9_0411  GTP-dependent nucleic acid-binding protein EngD  54.89 
 
 
365 aa  389  1e-107  Staphylococcus aureus subsp. aureus JH9  Bacteria  hitchhiker  0.00200515  n/a   
 
 
-
 
NC_013204  Elen_1055  GTP-binding protein YchF  56.79 
 
 
354 aa  383  1e-105  Eggerthella lenta DSM 2243  Bacteria  normal  0.0763151  hitchhiker  0.00159487 
 
 
-
 
NC_013170  Ccur_11960  GTP-binding protein YchF  57.06 
 
 
354 aa  381  1e-104  Cryptobacterium curtum DSM 15641  Bacteria  normal  0.642415  normal 
 
 
-
 
NC_013411  GYMC61_3547  GTP-dependent nucleic acid-binding protein EngD  55.31 
 
 
366 aa  379  1e-104  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_006368  lpp2707  GTP-dependent nucleic acid-binding protein EngD  52.47 
 
 
363 aa  375  1e-103  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_006369  lpl2579  GTP-dependent nucleic acid-binding protein EngD  52.75 
 
 
363 aa  375  1e-103  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_008740  Maqu_2368  GTP-dependent nucleic acid-binding protein EngD  54.12 
 
 
363 aa  377  1e-103  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_0530  GTP-dependent nucleic acid-binding protein EngD  53.57 
 
 
363 aa  373  1e-102  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_013165  Shel_21870  GTP-binding protein YchF  54.85 
 
 
354 aa  374  1e-102  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal  0.0475417 
 
 
-
 
NC_008751  Dvul_1647  GTP-dependent nucleic acid-binding protein EngD  53.95 
 
 
366 aa  372  1e-102  Desulfovibrio vulgaris DP4  Bacteria  normal  0.429909  normal  0.918011 
 
 
-
 
NC_011205  SeD_A1537  GTP-dependent nucleic acid-binding protein EngD  53.3 
 
 
363 aa  370  1e-101  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal  0.0518912 
 
 
-
 
NC_011094  SeSA_A1923  GTP-dependent nucleic acid-binding protein EngD  53.3 
 
 
363 aa  370  1e-101  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A1917  GTP-dependent nucleic acid-binding protein EngD  53.3 
 
 
363 aa  370  1e-101  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.188872  normal 
 
 
-
 
NC_007404  Tbd_0390  GTP-dependent nucleic acid-binding protein EngD  55.22 
 
 
363 aa  370  1e-101  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.997224  normal  0.0213751 
 
 
-
 
NC_013173  Dbac_0442  GTP-binding protein YchF  52.86 
 
 
366 aa  371  1e-101  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.637193  n/a   
 
 
-
 
NC_011992  Dtpsy_2928  GTP-binding protein YchF  54.89 
 
 
364 aa  368  1e-101  Acidovorax ebreus TPSY  Bacteria  normal  0.79075  n/a   
 
 
-
 
NC_011149  SeAg_B1353  GTP-dependent nucleic acid-binding protein EngD  53.3 
 
 
363 aa  370  1e-101  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0280261  n/a   
 
 
-
 
NC_008782  Ajs_3618  GTP-binding protein YchF  54.89 
 
 
364 aa  368  1e-101  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_009674  Bcer98_4015  GTP-dependent nucleic acid-binding protein EngD  52.7 
 
 
366 aa  370  1e-101  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.362655  n/a   
 
 
-
 
NC_011083  SeHA_C1981  GTP-dependent nucleic acid-binding protein EngD  53.3 
 
 
363 aa  370  1e-101  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.262835  normal 
 
 
-
 
NC_011725  BCB4264_A5602  GTP-dependent nucleic acid-binding protein EngD  51.9 
 
 
366 aa  368  1e-100  Bacillus cereus B4264  Bacteria  normal  0.0104876  n/a   
 
 
-
 
NC_002977  MCA2032  GTP-dependent nucleic acid-binding protein EngD  53.57 
 
 
363 aa  366  1e-100  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_3418  GTP-dependent nucleic acid-binding protein EngD  51.89 
 
 
366 aa  365  1e-100  Geobacillus sp. WCH70  Bacteria  decreased coverage  0.0000000016062  n/a   
 
 
-
 
NC_003909  BCE_5626  GTP-dependent nucleic acid-binding protein EngD  51.9 
 
 
366 aa  367  1e-100  Bacillus cereus ATCC 10987  Bacteria  hitchhiker  0.000871672  n/a   
 
 
-
 
NC_010002  Daci_1534  GTP-binding protein YchF  54.89 
 
 
364 aa  365  1e-100  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.452605 
 
 
-
 
NC_005945  BAS5328  GTP-dependent nucleic acid-binding protein EngD  51.63 
 
 
366 aa  365  1e-100  Bacillus anthracis str. Sterne  Bacteria  hitchhiker  0.00440809  n/a   
 
 
-
 
NC_005957  BT9727_5156  GTP-dependent nucleic acid-binding protein EngD  51.63 
 
 
366 aa  365  1e-100  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.474948  n/a   
 
 
-
 
NC_006274  BCZK5172  GTP-dependent nucleic acid-binding protein EngD  51.63 
 
 
366 aa  365  1e-100  Bacillus cereus E33L  Bacteria  decreased coverage  0.000341574  n/a   
 
 
-
 
NC_008752  Aave_0887  GTP-binding protein YchF  53.83 
 
 
364 aa  365  1e-100  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0231852  normal  0.589868 
 
 
-
 
NC_007517  Gmet_2845  GTP-dependent nucleic acid-binding protein EngD  53.55 
 
 
364 aa  366  1e-100  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.00000149199  hitchhiker  0.000000000000211408 
 
 
-
 
NC_007530  GBAA_5724  GTP-dependent nucleic acid-binding protein EngD  51.63 
 
 
366 aa  365  1e-100  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  hitchhiker  0.000153579  n/a   
 
 
-
 
NC_007947  Mfla_0675  GTP-dependent nucleic acid-binding protein EngD  52.47 
 
 
361 aa  367  1e-100  Methylobacillus flagellatus KT  Bacteria  normal  0.762559  normal 
 
 
-
 
NC_013889  TK90_0348  GTP-binding protein YchF  53.55 
 
 
364 aa  365  1e-100  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.214484 
 
 
-
 
NC_011658  BCAH187_A5663  GTP-dependent nucleic acid-binding protein EngD  51.63 
 
 
366 aa  365  1e-100  Bacillus cereus AH187  Bacteria  hitchhiker  0.0000189692  n/a   
 
 
-
 
NC_010159  YpAngola_A2468  GTP-dependent nucleic acid-binding protein EngD  51.65 
 
 
363 aa  365  1e-100  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_008340  Mlg_0286  GTP-binding protein YchF  52.86 
 
 
363 aa  365  1e-100  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal  0.79515 
 
 
-
 
NC_011772  BCG9842_B5333  GTP-dependent nucleic acid-binding protein EngD  51.9 
 
 
366 aa  368  1e-100  Bacillus cereus G9842  Bacteria  hitchhiker  0.000128538  hitchhiker  0.000000465437 
 
 
-
 
NC_011773  BCAH820_5585  GTP-dependent nucleic acid-binding protein EngD  51.63 
 
 
366 aa  365  1e-100  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.0000000000000269 
 
 
-
 
NC_010524  Lcho_0271  GTP-binding protein YchF  53.7 
 
 
364 aa  365  1e-100  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.198016 
 
 
-
 
NC_009708  YpsIP31758_2075  GTP-dependent nucleic acid-binding protein EngD  51.65 
 
 
363 aa  364  1e-99  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.0577109  n/a   
 
 
-
 
NC_010465  YPK_2187  GTP-dependent nucleic acid-binding protein EngD  51.65 
 
 
363 aa  364  1e-99  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_2444  GTP-binding protein YchF  51.65 
 
 
363 aa  363  2e-99  Escherichia coli DH1  Bacteria  normal  0.0781916  n/a   
 
 
-
 
NC_010498  EcSMS35_1939  GTP-dependent nucleic acid-binding protein EngD  51.65 
 
 
363 aa  363  2e-99  Escherichia coli SMS-3-5  Bacteria  normal  0.256808  normal  0.0918473 
 
 
-
 
NC_010658  SbBS512_E1367  GTP-dependent nucleic acid-binding protein EngD  51.65 
 
 
363 aa  363  2e-99  Shigella boydii CDC 3083-94  Bacteria  normal  0.37474  n/a   
 
 
-
 
NC_010468  EcolC_2423  GTP-dependent nucleic acid-binding protein EngD  51.65 
 
 
363 aa  363  2e-99  Escherichia coli ATCC 8739  Bacteria  normal  normal  0.0847638 
 
 
-
 
NC_010001  Cphy_2482  GTP-binding protein YchF  53.01 
 
 
365 aa  363  2e-99  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_1280  GTP-binding protein YchF  51.9 
 
 
367 aa  364  2e-99  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A1308  GTP-dependent nucleic acid-binding protein EngD  51.65 
 
 
363 aa  363  2e-99  Escherichia coli HS  Bacteria  normal  0.253077  n/a   
 
 
-
 
NC_009801  EcE24377A_1350  GTP-dependent nucleic acid-binding protein EngD  51.65 
 
 
363 aa  363  2e-99  Escherichia coli E24377A  Bacteria  normal  0.0630481  n/a   
 
 
-
 
NC_011353  ECH74115_1684  GTP-dependent nucleic acid-binding protein EngD  51.65 
 
 
363 aa  363  2e-99  Escherichia coli O157:H7 str. EC4115  Bacteria  hitchhiker  0.000467912  normal  0.464774 
 
 
-
 
CP001509  ECD_01178  translation-associated GTPase  51.92 
 
 
363 aa  363  3e-99  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_2063  GTP-dependent nucleic acid-binding protein EngD  51.1 
 
 
363 aa  363  3e-99  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_01188  hypothetical protein  51.92 
 
 
363 aa  363  3e-99  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_007484  Noc_0517  GTP-dependent nucleic acid-binding protein EngD  51.52 
 
 
362 aa  362  4e-99  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_1849  GTP-dependent nucleic acid-binding protein EngD  51.1 
 
 
363 aa  363  4e-99  Dickeya dadantii Ech703  Bacteria  normal  0.476561  n/a   
 
 
-
 
NC_008309  HS_0503  GTP-dependent nucleic acid-binding protein EngD  51.92 
 
 
363 aa  362  4e-99  Haemophilus somnus 129PT  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_3607  GTP-dependent nucleic acid-binding protein EngD  51.65 
 
 
363 aa  363  4e-99  Marinomonas sp. MWYL1  Bacteria  hitchhiker  0.000140673  normal  0.0364167 
 
 
-
 
NC_009832  Spro_1982  GTP-dependent nucleic acid-binding protein EngD  51.92 
 
 
363 aa  362  5.0000000000000005e-99  Serratia proteamaculans 568  Bacteria  normal  normal  0.0132051 
 
 
-
 
NC_013501  Rmar_0027  GTP-binding protein YchF  52.17 
 
 
366 aa  362  6e-99  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
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