| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0648 |
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| Symbol | ychF |
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| ID | 8709165 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 726770 |
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| End bp | 727858 |
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| Gene Length | 1089 bp |
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| Protein Length | 362 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 646482754 |
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| Product | GTP-binding protein YchF |
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| Protein accession | YP_003373878 |
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| Protein GI | 283783124 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0012] Predicted GTPase, probable translation factor |
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| TIGRFAM ID | [TIGR00092] GTP-binding protein YchF |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.379901 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTTTAA CTATTGGAAT TGTTGGATTG CCAAACGTTG GTAAGTCCAC TATGTTTAAT
GCTTTAACCC GCAACAACGT TTTGGCGGAG AATTATCCGT TTGCAACTAT TGAGCCTAAT
ACTGGTATTG TTCCGCTTCC GGATCATCGT CTTCCAGTTT TAGCTAAATT AGTTAATACT
GAAAAAATTG TTCCAGCAAC AGTTACTTTC GTTGATATTG CAGGAATTGT TAAGGGTGCC
TCCGAGGGTG AAGGCTTGGG CAATAAGTTC CTTGCTAATA TTCGCGAAGC AGACGCTATT
TGCGAAGTTG TTCGCGCGTT TAATGACGAC GATATTGTGC ATGTTAACGG AAAAGTAGAT
CCTGCTGACG ATATTGACAC GATTAATACT GAGCTAATTC TTGCCGATAT GCAAACTATT
GATAATGCTT TGCCAAAGCT TGAAAAAGAT TTGCGCGGTA AGAAAGTTAC GCAAGAATAC
GTAGACGCTG TAAATAAAGC TAAGGAAATT CTTGAATCTG GCAAAACTAT TGACCAGGCT
CATAACGAAA AGCTTATTGA TAAAAACGAC GTGTATGATT TGCACTTGCT AACTGCTAAG
CCATTTATTT ACGTGTTTAA CGTGGATGAT TCGGAGTTGG CTGATGAAGA TTTAAAGTCT
AAACTTTCTG CATCTGTCGC TCCTGCAAAA GCAATATTCC TTAATGCTCA ATTTGAGTCC
GAACTTACTG AGCTCGACGA AGCAGATGCT CGTGAAATGC TTGAAGATGC TGGTTTGAAG
GAATCTGGTT TGGATCAACT TGCTCGCGTA GGATTCGATA TTTTAGGTCT TCAAACCTAT
TTAACTGCCG GTGTTAAGGA AGTTCACGCC TGGCAGATTC ATAAAGGCTG GACTGCTCCA
CAAGCTGCTG GTGTGATTCA CACTGATTTT GAGCGTGGAT TTATTAAGGC AGAAATTGTG
TCATATGATG ATTTTGTTGC TGCTGACGGT TCTATGGCAA AAATTAAGGA AGAAGGAAAG
CTTCGTCTTG AAGGTCGCGA CTATGTGATG CAAGACGGCG ATATTGTTGA ATTTAAGTTC
AACGTATGA
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| Protein sequence | MSLTIGIVGL PNVGKSTMFN ALTRNNVLAE NYPFATIEPN TGIVPLPDHR LPVLAKLVNT
EKIVPATVTF VDIAGIVKGA SEGEGLGNKF LANIREADAI CEVVRAFNDD DIVHVNGKVD
PADDIDTINT ELILADMQTI DNALPKLEKD LRGKKVTQEY VDAVNKAKEI LESGKTIDQA
HNEKLIDKND VYDLHLLTAK PFIYVFNVDD SELADEDLKS KLSASVAPAK AIFLNAQFES
ELTELDEADA REMLEDAGLK ESGLDQLARV GFDILGLQTY LTAGVKEVHA WQIHKGWTAP
QAAGVIHTDF ERGFIKAEIV SYDDFVAADG SMAKIKEEGK LRLEGRDYVM QDGDIVEFKF
NV
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