More than 300 homologs were found in PanDaTox collection
for query gene HMPREF0424_0648 on replicon NC_013721
Organism: Gardnerella vaginalis 409-05



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010816  BLD_0667  GTP-dependent nucleic acid-binding protein EngD  87.85 
 
 
364 aa  634    Bifidobacterium longum DJO10A  Bacteria  normal  0.416643  n/a   
 
 
-
 
NC_013721  HMPREF0424_0648  GTP-binding protein YchF  100 
 
 
362 aa  732    Gardnerella vaginalis 409-05  Bacteria  n/a    normal  0.379901 
 
 
-
 
NC_013521  Sked_26380  GTP-binding protein YchF  66.85 
 
 
361 aa  499  1e-140  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.0845459 
 
 
-
 
NC_014151  Cfla_0977  GTP-binding protein YchF  68.23 
 
 
358 aa  491  9.999999999999999e-139  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.245774  hitchhiker  0.00114943 
 
 
-
 
NC_013174  Jden_0748  GTP-dependent nucleic acid-binding protein EngD  65.75 
 
 
369 aa  490  1e-137  Jonesia denitrificans DSM 20603  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_8269  GTP-dependent nucleic acid-binding protein EngD  66.02 
 
 
357 aa  488  1e-136  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_22930  GTP-dependent nucleic acid-binding protein EngD  65.56 
 
 
361 aa  482  1e-135  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_1105  GTP-dependent nucleic acid-binding protein EngD  64.64 
 
 
361 aa  484  1e-135  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.692178 
 
 
-
 
NC_013530  Xcel_0946  GTP-binding protein YchF  65.19 
 
 
361 aa  483  1e-135  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_31400  GTP-dependent nucleic acid-binding protein EngD  65.56 
 
 
360 aa  478  1e-134  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.292075 
 
 
-
 
NC_008578  Acel_1861  GTP-dependent nucleic acid-binding protein EngD  63.32 
 
 
373 aa  474  1e-133  Acidothermus cellulolyticus 11B  Bacteria  normal  normal  0.924801 
 
 
-
 
NC_013169  Ksed_20210  GTP-dependent nucleic acid-binding protein EngD  66.57 
 
 
361 aa  474  1e-132  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.640353  normal  0.191287 
 
 
-
 
NC_007777  Francci3_3871  GTP-dependent nucleic acid-binding protein EngD  65.19 
 
 
358 aa  469  1.0000000000000001e-131  Frankia sp. CcI3  Bacteria  normal  0.479028  normal 
 
 
-
 
NC_013947  Snas_5521  GTP-binding protein YchF  64.82 
 
 
358 aa  469  1.0000000000000001e-131  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.633913  normal  0.842427 
 
 
-
 
NC_014210  Ndas_0133  GTP-binding protein YchF  63.29 
 
 
361 aa  468  1.0000000000000001e-131  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_007333  Tfu_0473  GTP-dependent nucleic acid-binding protein EngD  63.01 
 
 
364 aa  466  9.999999999999999e-131  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_013441  Gbro_3392  GTP-binding protein YchF  66.3 
 
 
359 aa  465  9.999999999999999e-131  Gordonia bronchialis DSM 43247  Bacteria  normal  0.180575  n/a   
 
 
-
 
NC_013510  Tcur_1095  GTP-binding protein YchF  63.46 
 
 
363 aa  464  9.999999999999999e-131  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0537245  n/a   
 
 
-
 
NC_008541  Arth_2831  GTP-dependent nucleic acid-binding protein EngD  64.09 
 
 
368 aa  467  9.999999999999999e-131  Arthrobacter sp. FB24  Bacteria  normal  0.593989  n/a   
 
 
-
 
NC_008699  Noca_1080  GTP-dependent nucleic acid-binding protein EngD  64.74 
 
 
359 aa  465  9.999999999999999e-131  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_2546  GTP-dependent nucleic acid-binding protein EngD  63.26 
 
 
363 aa  461  1e-129  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.000002151 
 
 
-
 
NC_013595  Sros_8476  GTP-binding protein YchF  61.71 
 
 
362 aa  457  1e-127  Streptosporangium roseum DSM 43021  Bacteria  normal  0.775953  normal 
 
 
-
 
NC_009664  Krad_1124  GTP-dependent nucleic acid-binding protein EngD  64.92 
 
 
361 aa  454  1e-127  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.356013 
 
 
-
 
NC_013093  Amir_0736  GTP-dependent nucleic acid-binding protein EngD  64.36 
 
 
359 aa  453  1.0000000000000001e-126  Actinosynnema mirum DSM 43827  Bacteria  normal  0.217905  n/a   
 
 
-
 
NC_009380  Strop_3781  GTP-dependent nucleic acid-binding protein EngD  61.6 
 
 
361 aa  447  1e-125  Salinispora tropica CNB-440  Bacteria  normal  normal  0.699286 
 
 
-
 
NC_009953  Sare_4160  GTP-dependent nucleic acid-binding protein EngD  61.88 
 
 
361 aa  448  1e-125  Salinispora arenicola CNS-205  Bacteria  normal  decreased coverage  0.000134834 
 
 
-
 
NC_013235  Namu_4365  GTP-dependent nucleic acid-binding protein EngD  65.47 
 
 
359 aa  445  1.0000000000000001e-124  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013757  Gobs_1033  GTP-binding protein YchF  64.64 
 
 
357 aa  446  1.0000000000000001e-124  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_014158  Tpau_3101  GTP-binding protein YchF  63.81 
 
 
357 aa  447  1.0000000000000001e-124  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_012803  Mlut_16190  GTP-dependent nucleic acid-binding protein EngD  65.63 
 
 
354 aa  442  1e-123  Micrococcus luteus NCTC 2665  Bacteria  normal  0.938895  n/a   
 
 
-
 
NC_009338  Mflv_2082  GTP-dependent nucleic acid-binding protein EngD  63.54 
 
 
360 aa  442  1e-123  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.330246  normal  0.125841 
 
 
-
 
NC_008726  Mvan_4625  GTP-dependent nucleic acid-binding protein EngD  63.81 
 
 
360 aa  442  1e-123  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.54824  normal 
 
 
-
 
NC_008146  Mmcs_4102  GTP-dependent nucleic acid-binding protein EngD  64.62 
 
 
376 aa  442  1e-123  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_3062  GTP-binding protein YchF  61.43 
 
 
362 aa  443  1e-123  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_008705  Mkms_4178  GTP-dependent nucleic acid-binding protein EngD  64.62 
 
 
376 aa  442  1e-123  Mycobacterium sp. KMS  Bacteria  normal  0.40111  normal 
 
 
-
 
NC_009921  Franean1_0857  GTP-dependent nucleic acid-binding protein EngD  62.43 
 
 
358 aa  441  9.999999999999999e-123  Frankia sp. EAN1pec  Bacteria  normal  0.0266679  normal  0.117665 
 
 
-
 
NC_009077  Mjls_4333  GTP-dependent nucleic acid-binding protein EngD  64.62 
 
 
376 aa  441  9.999999999999999e-123  Mycobacterium sp. JLS  Bacteria  normal  normal  0.567593 
 
 
-
 
NC_009565  TBFG_11134  GTP-dependent nucleic acid-binding protein EngD  62.71 
 
 
357 aa  419  1e-116  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_013204  Elen_1055  GTP-binding protein YchF  55.04 
 
 
354 aa  393  1e-108  Eggerthella lenta DSM 2243  Bacteria  normal  0.0763151  hitchhiker  0.00159487 
 
 
-
 
NC_013170  Ccur_11960  GTP-binding protein YchF  54.79 
 
 
354 aa  382  1e-105  Cryptobacterium curtum DSM 15641  Bacteria  normal  0.642415  normal 
 
 
-
 
NC_002976  SERP0041  GTP-dependent nucleic acid-binding protein EngD  53.26 
 
 
365 aa  383  1e-105  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_013203  Apar_0186  GTP-binding protein YchF  54.67 
 
 
354 aa  384  1e-105  Atopobium parvulum DSM 20469  Bacteria  normal  normal  0.448936 
 
 
-
 
NC_009632  SaurJH1_0422  GTP-dependent nucleic acid-binding protein EngD  53.78 
 
 
365 aa  384  1e-105  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.0242427  n/a   
 
 
-
 
NC_009487  SaurJH9_0411  GTP-dependent nucleic acid-binding protein EngD  53.78 
 
 
365 aa  384  1e-105  Staphylococcus aureus subsp. aureus JH9  Bacteria  hitchhiker  0.00200515  n/a   
 
 
-
 
NC_006368  lpp2707  GTP-dependent nucleic acid-binding protein EngD  54.08 
 
 
363 aa  380  1e-104  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_006369  lpl2579  GTP-dependent nucleic acid-binding protein EngD  53.8 
 
 
363 aa  379  1e-104  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_009253  Dred_1280  GTP-binding protein YchF  54.45 
 
 
367 aa  378  1e-104  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A3037  GTP-dependent nucleic acid-binding protein EngD  53.24 
 
 
387 aa  375  1e-103  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_5585  GTP-dependent nucleic acid-binding protein EngD  52.02 
 
 
366 aa  372  1e-102  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.0000000000000269 
 
 
-
 
NC_003909  BCE_5626  GTP-dependent nucleic acid-binding protein EngD  52.02 
 
 
366 aa  371  1e-102  Bacillus cereus ATCC 10987  Bacteria  hitchhiker  0.000871672  n/a   
 
 
-
 
NC_005945  BAS5328  GTP-dependent nucleic acid-binding protein EngD  52.02 
 
 
366 aa  372  1e-102  Bacillus anthracis str. Sterne  Bacteria  hitchhiker  0.00440809  n/a   
 
 
-
 
NC_005957  BT9727_5156  GTP-dependent nucleic acid-binding protein EngD  52.02 
 
 
366 aa  372  1e-102  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.474948  n/a   
 
 
-
 
NC_011772  BCG9842_B5333  GTP-dependent nucleic acid-binding protein EngD  52.29 
 
 
366 aa  373  1e-102  Bacillus cereus G9842  Bacteria  hitchhiker  0.000128538  hitchhiker  0.000000465437 
 
 
-
 
NC_006274  BCZK5172  GTP-dependent nucleic acid-binding protein EngD  52.02 
 
 
366 aa  372  1e-102  Bacillus cereus E33L  Bacteria  decreased coverage  0.000341574  n/a   
 
 
-
 
NC_007404  Tbd_0390  GTP-dependent nucleic acid-binding protein EngD  53.95 
 
 
363 aa  374  1e-102  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.997224  normal  0.0213751 
 
 
-
 
NC_007530  GBAA_5724  GTP-dependent nucleic acid-binding protein EngD  52.02 
 
 
366 aa  372  1e-102  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  hitchhiker  0.000153579  n/a   
 
 
-
 
NC_007973  Rmet_3193  GTP-dependent nucleic acid-binding protein EngD  53.51 
 
 
363 aa  373  1e-102  Cupriavidus metallidurans CH34  Bacteria  normal  0.36162  normal 
 
 
-
 
NC_011658  BCAH187_A5663  GTP-dependent nucleic acid-binding protein EngD  52.02 
 
 
366 aa  372  1e-102  Bacillus cereus AH187  Bacteria  hitchhiker  0.0000189692  n/a   
 
 
-
 
NC_009674  Bcer98_4015  GTP-dependent nucleic acid-binding protein EngD  52.55 
 
 
366 aa  372  1e-102  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.362655  n/a   
 
 
-
 
NC_013411  GYMC61_3547  GTP-dependent nucleic acid-binding protein EngD  51.87 
 
 
366 aa  374  1e-102  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011725  BCB4264_A5602  GTP-dependent nucleic acid-binding protein EngD  52.29 
 
 
366 aa  373  1e-102  Bacillus cereus B4264  Bacteria  normal  0.0104876  n/a   
 
 
-
 
NC_013889  TK90_0348  GTP-binding protein YchF  52.96 
 
 
364 aa  371  1e-102  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.214484 
 
 
-
 
NC_002977  MCA2032  GTP-dependent nucleic acid-binding protein EngD  52.6 
 
 
363 aa  369  1e-101  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_3596  GTP-dependent nucleic acid-binding protein EngD  52.02 
 
 
364 aa  370  1e-101  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_006349  BMAA0519  GTP-dependent nucleic acid-binding protein EngD  52.02 
 
 
364 aa  370  1e-101  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_010508  Bcenmc03_0496  GTP-dependent nucleic acid-binding protein EngD  52.83 
 
 
364 aa  370  1e-101  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_013173  Dbac_0442  GTP-binding protein YchF  51.5 
 
 
366 aa  370  1e-101  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.637193  n/a   
 
 
-
 
NC_007434  BURPS1710b_3587  GTP-dependent nucleic acid-binding protein EngD  52.29 
 
 
364 aa  371  1e-101  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_010084  Bmul_2871  GTP-dependent nucleic acid-binding protein EngD  52.83 
 
 
364 aa  370  1e-101  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.103234  normal  0.491395 
 
 
-
 
NC_007614  Nmul_A0592  GTP-dependent nucleic acid-binding protein EngD  52.45 
 
 
367 aa  370  1e-101  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.269932  n/a   
 
 
-
 
NC_009074  BURPS668_3569  GTP-dependent nucleic acid-binding protein EngD  52.29 
 
 
364 aa  371  1e-101  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A1923  GTP-dependent nucleic acid-binding protein EngD  52.02 
 
 
364 aa  370  1e-101  Burkholderia mallei NCTC 10247  Bacteria  normal  0.264442  n/a   
 
 
-
 
NC_008835  BMA10229_0952  GTP-dependent nucleic acid-binding protein EngD  52.02 
 
 
364 aa  370  1e-101  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_008060  Bcen_2581  GTP-dependent nucleic acid-binding protein EngD  52.83 
 
 
364 aa  370  1e-101  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008784  BMASAVP1_0657  GTP-dependent nucleic acid-binding protein EngD  52.02 
 
 
364 aa  370  1e-101  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_0524  GTP-dependent nucleic acid-binding protein EngD  52.83 
 
 
364 aa  370  1e-101  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_2000  GTP-dependent nucleic acid-binding protein EngD  50 
 
 
364 aa  367  1e-100  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.0365484  n/a   
 
 
-
 
NC_007510  Bcep18194_A3611  GTP-dependent nucleic acid-binding protein EngD  51.89 
 
 
364 aa  365  1e-100  Burkholderia sp. 383  Bacteria  normal  normal  0.850292 
 
 
-
 
NC_007651  BTH_I2920  GTP-dependent nucleic acid-binding protein EngD  51.75 
 
 
364 aa  367  1e-100  Burkholderia thailandensis E264  Bacteria  normal  0.657058  n/a   
 
 
-
 
NC_010551  BamMC406_0453  GTP-dependent nucleic acid-binding protein EngD  52.02 
 
 
364 aa  367  1e-100  Burkholderia ambifaria MC40-6  Bacteria  normal  0.660955  normal  0.0338644 
 
 
-
 
NC_013205  Aaci_2931  GTP-binding protein YchF  52.3 
 
 
366 aa  365  1e-100  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_010531  Pnec_0155  GTP-binding protein YchF  52.02 
 
 
364 aa  367  1e-100  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  0.611358  normal  0.940592 
 
 
-
 
NC_008390  Bamb_0429  GTP-dependent nucleic acid-binding protein EngD  52.02 
 
 
364 aa  367  1e-100  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_008530  LGAS_1739  GTP-dependent nucleic acid-binding protein EngD  52.29 
 
 
366 aa  366  1e-100  Lactobacillus gasseri ATCC 33323  Bacteria  hitchhiker  0.00258583  normal 
 
 
-
 
NC_007947  Mfla_0675  GTP-dependent nucleic acid-binding protein EngD  51.76 
 
 
361 aa  364  1e-99  Methylobacillus flagellatus KT  Bacteria  normal  0.762559  normal 
 
 
-
 
NC_008609  Ppro_0746  GTP-dependent nucleic acid-binding protein EngD  50.41 
 
 
364 aa  363  2e-99  Pelobacter propionicus DSM 2379  Bacteria  normal  0.0310591  n/a   
 
 
-
 
NC_011901  Tgr7_0530  GTP-dependent nucleic acid-binding protein EngD  49.32 
 
 
363 aa  364  2e-99  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_011726  PCC8801_3090  GTP-dependent nucleic acid-binding protein EngD  52.88 
 
 
363 aa  363  3e-99  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_3030  GTP-dependent nucleic acid-binding protein EngD  52.88 
 
 
363 aa  363  3e-99  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_2765  GTP-dependent nucleic acid-binding protein EngD  50.27 
 
 
364 aa  363  3e-99  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_3418  GTP-dependent nucleic acid-binding protein EngD  50 
 
 
366 aa  362  4e-99  Geobacillus sp. WCH70  Bacteria  decreased coverage  0.0000000016062  n/a   
 
 
-
 
NC_003295  RSc2898  GTP-dependent nucleic acid-binding protein EngD  50.94 
 
 
364 aa  362  4e-99  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_013422  Hneap_1171  GTP-binding protein YchF  50.13 
 
 
364 aa  362  4e-99  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_002967  TDE0305  GTP-dependent nucleic acid-binding protein EngD  52 
 
 
368 aa  362  5.0000000000000005e-99  Treponema denticola ATCC 35405  Bacteria  normal  0.0911742  n/a   
 
 
-
 
NC_008740  Maqu_2368  GTP-dependent nucleic acid-binding protein EngD  49.73 
 
 
363 aa  362  5.0000000000000005e-99  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_007204  Psyc_0894  GTP-dependent nucleic acid-binding protein EngD  50.68 
 
 
363 aa  362  6e-99  Psychrobacter arcticus 273-4  Bacteria  normal  normal  0.943704 
 
 
-
 
NC_004347  SO_1185  GTP-dependent nucleic acid-binding protein EngD  51.51 
 
 
363 aa  362  7.0000000000000005e-99  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_012918  GM21_1475  GTP-dependent nucleic acid-binding protein EngD  50 
 
 
364 aa  362  7.0000000000000005e-99  Geobacter sp. M21  Bacteria  n/a    normal  0.0116591 
 
 
-
 
NC_011663  Sbal223_1110  GTP-dependent nucleic acid-binding protein EngD  51.23 
 
 
363 aa  362  8e-99  Shewanella baltica OS223  Bacteria  hitchhiker  0.000000114321  hitchhiker  0.00000000131179 
 
 
-
 
NC_008528  OEOE_0117  GTPase, translation factor  50.94 
 
 
367 aa  361  8e-99  Oenococcus oeni PSU-1  Bacteria  normal  n/a   
 
 
-
 
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