More than 300 homologs were found in PanDaTox collection
for query gene Gbro_3392 on replicon NC_013441
Organism: Gordonia bronchialis DSM 43247



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013441  Gbro_3392  GTP-binding protein YchF  100 
 
 
359 aa  721    Gordonia bronchialis DSM 43247  Bacteria  normal  0.180575  n/a   
 
 
-
 
NC_014158  Tpau_3101  GTP-binding protein YchF  83.57 
 
 
357 aa  585  1e-166  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_31400  GTP-dependent nucleic acid-binding protein EngD  77.78 
 
 
360 aa  565  1e-160  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.292075 
 
 
-
 
NC_013093  Amir_0736  GTP-dependent nucleic acid-binding protein EngD  78.55 
 
 
359 aa  557  1e-158  Actinosynnema mirum DSM 43827  Bacteria  normal  0.217905  n/a   
 
 
-
 
NC_013235  Namu_4365  GTP-dependent nucleic acid-binding protein EngD  80.5 
 
 
359 aa  555  1e-157  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_2082  GTP-dependent nucleic acid-binding protein EngD  80.5 
 
 
360 aa  553  1e-156  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.330246  normal  0.125841 
 
 
-
 
NC_009077  Mjls_4333  GTP-dependent nucleic acid-binding protein EngD  79.78 
 
 
376 aa  541  1e-153  Mycobacterium sp. JLS  Bacteria  normal  normal  0.567593 
 
 
-
 
NC_008146  Mmcs_4102  GTP-dependent nucleic acid-binding protein EngD  80.06 
 
 
376 aa  542  1e-153  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_4178  GTP-dependent nucleic acid-binding protein EngD  80.06 
 
 
376 aa  542  1e-153  Mycobacterium sp. KMS  Bacteria  normal  0.40111  normal 
 
 
-
 
NC_008726  Mvan_4625  GTP-dependent nucleic acid-binding protein EngD  78.83 
 
 
360 aa  535  1e-151  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.54824  normal 
 
 
-
 
NC_013131  Caci_8269  GTP-dependent nucleic acid-binding protein EngD  70.47 
 
 
357 aa  526  1e-148  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_008541  Arth_2831  GTP-dependent nucleic acid-binding protein EngD  70.36 
 
 
368 aa  518  1e-146  Arthrobacter sp. FB24  Bacteria  normal  0.593989  n/a   
 
 
-
 
NC_007333  Tfu_0473  GTP-dependent nucleic acid-binding protein EngD  70.88 
 
 
364 aa  515  1.0000000000000001e-145  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_26380  GTP-binding protein YchF  70.91 
 
 
361 aa  515  1.0000000000000001e-145  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.0845459 
 
 
-
 
NC_012669  Bcav_1105  GTP-dependent nucleic acid-binding protein EngD  72.02 
 
 
361 aa  517  1.0000000000000001e-145  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.692178 
 
 
-
 
NC_014210  Ndas_0133  GTP-binding protein YchF  70.17 
 
 
361 aa  514  1.0000000000000001e-145  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_009565  TBFG_11134  GTP-dependent nucleic acid-binding protein EngD  77.16 
 
 
357 aa  511  1e-144  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_013169  Ksed_20210  GTP-dependent nucleic acid-binding protein EngD  73.13 
 
 
361 aa  513  1e-144  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.640353  normal  0.191287 
 
 
-
 
NC_011886  Achl_2546  GTP-dependent nucleic acid-binding protein EngD  69.53 
 
 
363 aa  509  1e-143  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.000002151 
 
 
-
 
NC_013530  Xcel_0946  GTP-binding protein YchF  70.36 
 
 
361 aa  511  1e-143  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_1124  GTP-dependent nucleic acid-binding protein EngD  72.85 
 
 
361 aa  506  9.999999999999999e-143  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.356013 
 
 
-
 
NC_013510  Tcur_1095  GTP-binding protein YchF  69.7 
 
 
363 aa  501  1e-141  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0537245  n/a   
 
 
-
 
NC_013595  Sros_8476  GTP-binding protein YchF  69.06 
 
 
362 aa  502  1e-141  Streptosporangium roseum DSM 43021  Bacteria  normal  0.775953  normal 
 
 
-
 
NC_014151  Cfla_0977  GTP-binding protein YchF  72.42 
 
 
358 aa  504  1e-141  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.245774  hitchhiker  0.00114943 
 
 
-
 
NC_013174  Jden_0748  GTP-dependent nucleic acid-binding protein EngD  69.81 
 
 
369 aa  497  1e-139  Jonesia denitrificans DSM 20603  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_5521  GTP-binding protein YchF  70.67 
 
 
358 aa  495  1e-139  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.633913  normal  0.842427 
 
 
-
 
NC_007777  Francci3_3871  GTP-dependent nucleic acid-binding protein EngD  71.03 
 
 
358 aa  497  1e-139  Frankia sp. CcI3  Bacteria  normal  0.479028  normal 
 
 
-
 
NC_008578  Acel_1861  GTP-dependent nucleic acid-binding protein EngD  68.22 
 
 
373 aa  497  1e-139  Acidothermus cellulolyticus 11B  Bacteria  normal  normal  0.924801 
 
 
-
 
NC_013172  Bfae_22930  GTP-dependent nucleic acid-binding protein EngD  67.69 
 
 
361 aa  493  9.999999999999999e-139  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_0857  GTP-dependent nucleic acid-binding protein EngD  70.47 
 
 
358 aa  492  9.999999999999999e-139  Frankia sp. EAN1pec  Bacteria  normal  0.0266679  normal  0.117665 
 
 
-
 
NC_013757  Gobs_1033  GTP-binding protein YchF  71.03 
 
 
357 aa  491  9.999999999999999e-139  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_012803  Mlut_16190  GTP-dependent nucleic acid-binding protein EngD  72.6 
 
 
354 aa  493  9.999999999999999e-139  Micrococcus luteus NCTC 2665  Bacteria  normal  0.938895  n/a   
 
 
-
 
NC_009953  Sare_4160  GTP-dependent nucleic acid-binding protein EngD  69.53 
 
 
361 aa  488  1e-137  Salinispora arenicola CNS-205  Bacteria  normal  decreased coverage  0.000134834 
 
 
-
 
NC_008699  Noca_1080  GTP-dependent nucleic acid-binding protein EngD  68.33 
 
 
359 aa  488  1e-137  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_013721  HMPREF0424_0648  GTP-binding protein YchF  66.57 
 
 
362 aa  486  1e-136  Gardnerella vaginalis 409-05  Bacteria  n/a    normal  0.379901 
 
 
-
 
NC_009380  Strop_3781  GTP-dependent nucleic acid-binding protein EngD  68.98 
 
 
361 aa  485  1e-136  Salinispora tropica CNB-440  Bacteria  normal  normal  0.699286 
 
 
-
 
NC_014165  Tbis_3062  GTP-binding protein YchF  67.4 
 
 
362 aa  478  1e-134  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_010816  BLD_0667  GTP-dependent nucleic acid-binding protein EngD  65.47 
 
 
364 aa  460  9.999999999999999e-129  Bifidobacterium longum DJO10A  Bacteria  normal  0.416643  n/a   
 
 
-
 
NC_013203  Apar_0186  GTP-binding protein YchF  57.78 
 
 
354 aa  416  9.999999999999999e-116  Atopobium parvulum DSM 20469  Bacteria  normal  normal  0.448936 
 
 
-
 
NC_013170  Ccur_11960  GTP-binding protein YchF  58.89 
 
 
354 aa  409  1e-113  Cryptobacterium curtum DSM 15641  Bacteria  normal  0.642415  normal 
 
 
-
 
NC_007347  Reut_A3037  GTP-dependent nucleic acid-binding protein EngD  59.4 
 
 
387 aa  402  1e-111  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_013204  Elen_1055  GTP-binding protein YchF  57.46 
 
 
354 aa  398  9.999999999999999e-111  Eggerthella lenta DSM 2243  Bacteria  normal  0.0763151  hitchhiker  0.00159487 
 
 
-
 
NC_007973  Rmet_3193  GTP-dependent nucleic acid-binding protein EngD  58.86 
 
 
363 aa  398  9.999999999999999e-111  Cupriavidus metallidurans CH34  Bacteria  normal  0.36162  normal 
 
 
-
 
NC_010682  Rpic_3140  GTP-dependent nucleic acid-binding protein EngD  55.77 
 
 
364 aa  389  1e-107  Ralstonia pickettii 12J  Bacteria  normal  0.48249  normal  0.369877 
 
 
-
 
NC_007404  Tbd_0390  GTP-dependent nucleic acid-binding protein EngD  56.99 
 
 
363 aa  388  1e-107  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.997224  normal  0.0213751 
 
 
-
 
NC_007484  Noc_0517  GTP-dependent nucleic acid-binding protein EngD  54.42 
 
 
362 aa  388  1e-107  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_0530  GTP-dependent nucleic acid-binding protein EngD  56.01 
 
 
363 aa  390  1e-107  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A1923  GTP-dependent nucleic acid-binding protein EngD  56.56 
 
 
364 aa  386  1e-106  Burkholderia mallei NCTC 10247  Bacteria  normal  0.264442  n/a   
 
 
-
 
NC_008784  BMASAVP1_0657  GTP-dependent nucleic acid-binding protein EngD  56.56 
 
 
364 aa  386  1e-106  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_3569  GTP-dependent nucleic acid-binding protein EngD  56.56 
 
 
364 aa  387  1e-106  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_006349  BMAA0519  GTP-dependent nucleic acid-binding protein EngD  56.56 
 
 
364 aa  386  1e-106  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_006368  lpp2707  GTP-dependent nucleic acid-binding protein EngD  54.27 
 
 
363 aa  385  1e-106  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_006369  lpl2579  GTP-dependent nucleic acid-binding protein EngD  54.55 
 
 
363 aa  386  1e-106  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_008825  Mpe_A3166  putative GTP-binding protein  56.32 
 
 
364 aa  387  1e-106  Methylibium petroleiphilum PM1  Bacteria  normal  hitchhiker  0.00563466 
 
 
-
 
NC_007434  BURPS1710b_3587  GTP-dependent nucleic acid-binding protein EngD  56.56 
 
 
364 aa  387  1e-106  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_013422  Hneap_1171  GTP-binding protein YchF  53.85 
 
 
364 aa  385  1e-106  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_3596  GTP-dependent nucleic acid-binding protein EngD  56.56 
 
 
364 aa  386  1e-106  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I2920  GTP-dependent nucleic acid-binding protein EngD  56.28 
 
 
364 aa  387  1e-106  Burkholderia thailandensis E264  Bacteria  normal  0.657058  n/a   
 
 
-
 
NC_010524  Lcho_0271  GTP-binding protein YchF  56.32 
 
 
364 aa  385  1e-106  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.198016 
 
 
-
 
NC_008835  BMA10229_0952  GTP-dependent nucleic acid-binding protein EngD  56.56 
 
 
364 aa  386  1e-106  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_012856  Rpic12D_2774  GTP-dependent nucleic acid-binding protein EngD  55.37 
 
 
363 aa  385  1e-106  Ralstonia pickettii 12D  Bacteria  normal  normal  0.97205 
 
 
-
 
NC_003295  RSc2898  GTP-dependent nucleic acid-binding protein EngD  55.46 
 
 
364 aa  384  1e-105  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_3733  GTP-dependent nucleic acid-binding protein EngD  56.16 
 
 
363 aa  382  1e-105  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.316822 
 
 
-
 
NC_010338  Caul_0708  GTP-dependent nucleic acid-binding protein EngD  53.83 
 
 
366 aa  381  1e-105  Caulobacter sp. K31  Bacteria  normal  0.965008  normal 
 
 
-
 
NC_010084  Bmul_2871  GTP-dependent nucleic acid-binding protein EngD  56.28 
 
 
364 aa  384  1e-105  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.103234  normal  0.491395 
 
 
-
 
NC_010508  Bcenmc03_0496  GTP-dependent nucleic acid-binding protein EngD  55.19 
 
 
364 aa  382  1e-105  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008060  Bcen_2581  GTP-dependent nucleic acid-binding protein EngD  55.19 
 
 
364 aa  382  1e-105  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_0524  GTP-dependent nucleic acid-binding protein EngD  55.19 
 
 
364 aa  382  1e-105  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_002976  SERP0041  GTP-dependent nucleic acid-binding protein EngD  52.33 
 
 
365 aa  378  1e-104  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_2928  GTP-binding protein YchF  55.98 
 
 
364 aa  380  1e-104  Acidovorax ebreus TPSY  Bacteria  normal  0.79075  n/a   
 
 
-
 
NC_009487  SaurJH9_0411  GTP-dependent nucleic acid-binding protein EngD  52.88 
 
 
365 aa  381  1e-104  Staphylococcus aureus subsp. aureus JH9  Bacteria  hitchhiker  0.00200515  n/a   
 
 
-
 
NC_009632  SaurJH1_0422  GTP-dependent nucleic acid-binding protein EngD  52.88 
 
 
365 aa  381  1e-104  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.0242427  n/a   
 
 
-
 
NC_007510  Bcep18194_A3611  GTP-dependent nucleic acid-binding protein EngD  54.92 
 
 
364 aa  379  1e-104  Burkholderia sp. 383  Bacteria  normal  normal  0.850292 
 
 
-
 
NC_013889  TK90_0348  GTP-binding protein YchF  54.67 
 
 
364 aa  379  1e-104  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.214484 
 
 
-
 
NC_010531  Pnec_0155  GTP-binding protein YchF  55.22 
 
 
364 aa  379  1e-104  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  0.611358  normal  0.940592 
 
 
-
 
NC_008528  OEOE_0117  GTPase, translation factor  52.86 
 
 
367 aa  379  1e-104  Oenococcus oeni PSU-1  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_3618  GTP-binding protein YchF  55.98 
 
 
364 aa  380  1e-104  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_010551  BamMC406_0453  GTP-dependent nucleic acid-binding protein EngD  54.37 
 
 
364 aa  377  1e-103  Burkholderia ambifaria MC40-6  Bacteria  normal  0.660955  normal  0.0338644 
 
 
-
 
NC_010002  Daci_1534  GTP-binding protein YchF  55.16 
 
 
364 aa  375  1e-103  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.452605 
 
 
-
 
NC_002977  MCA2032  GTP-dependent nucleic acid-binding protein EngD  54.82 
 
 
363 aa  375  1e-103  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_009379  Pnuc_0142  GTP-binding protein YchF  54.67 
 
 
364 aa  375  1e-103  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  0.400282  n/a   
 
 
-
 
NC_013173  Dbac_0442  GTP-binding protein YchF  53.28 
 
 
366 aa  376  1e-103  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.637193  n/a   
 
 
-
 
NC_007498  Pcar_2000  GTP-dependent nucleic acid-binding protein EngD  53.15 
 
 
364 aa  376  1e-103  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.0365484  n/a   
 
 
-
 
NC_012791  Vapar_4635  GTP-dependent nucleic acid-binding protein EngD  54.79 
 
 
363 aa  377  1e-103  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_3507  GTP-dependent nucleic acid-binding protein EngD  54.92 
 
 
364 aa  377  1e-103  Burkholderia phytofirmans PsJN  Bacteria  normal  0.125034  normal  0.0137315 
 
 
-
 
NC_011662  Tmz1t_3631  GTP-dependent nucleic acid-binding protein EngD  55.1 
 
 
363 aa  375  1e-103  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_007951  Bxe_A0450  GTP-dependent nucleic acid-binding protein EngD  54.4 
 
 
364 aa  375  1e-103  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_0466  GTP-binding protein YchF  55.74 
 
 
364 aa  377  1e-103  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_008390  Bamb_0429  GTP-dependent nucleic acid-binding protein EngD  54.37 
 
 
364 aa  377  1e-103  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_2368  GTP-dependent nucleic acid-binding protein EngD  53.44 
 
 
363 aa  377  1e-103  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_0887  GTP-binding protein YchF  55.74 
 
 
364 aa  377  1e-103  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0231852  normal  0.589868 
 
 
-
 
NC_010622  Bphy_2708  GTP-dependent nucleic acid-binding protein EngD  53.93 
 
 
364 aa  373  1e-102  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_012793  GWCH70_3418  GTP-dependent nucleic acid-binding protein EngD  51.9 
 
 
366 aa  373  1e-102  Geobacillus sp. WCH70  Bacteria  decreased coverage  0.0000000016062  n/a   
 
 
-
 
NC_007520  Tcr_0395  GTP-dependent nucleic acid-binding protein EngD  52.59 
 
 
363 aa  374  1e-102  Thiomicrospira crunogena XCL-2  Bacteria  hitchhiker  0.00186596  n/a   
 
 
-
 
NC_007614  Nmul_A0592  GTP-dependent nucleic acid-binding protein EngD  53.68 
 
 
367 aa  373  1e-102  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.269932  n/a   
 
 
-
 
NC_013411  GYMC61_3547  GTP-dependent nucleic acid-binding protein EngD  51.76 
 
 
366 aa  374  1e-102  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008751  Dvul_1647  GTP-dependent nucleic acid-binding protein EngD  53.53 
 
 
366 aa  372  1e-102  Desulfovibrio vulgaris DP4  Bacteria  normal  0.429909  normal  0.918011 
 
 
-
 
NC_007604  Synpcc7942_0554  GTP-dependent nucleic acid-binding protein EngD  53.87 
 
 
363 aa  369  1e-101  Synechococcus elongatus PCC 7942  Bacteria  normal  0.268556  normal 
 
 
-
 
NC_013501  Rmar_0027  GTP-binding protein YchF  52.32 
 
 
366 aa  369  1e-101  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_4263  GTP-dependent nucleic acid-binding protein EngD  53.85 
 
 
363 aa  371  1e-101  Cyanothece sp. PCC 7425  Bacteria  normal  0.109438  normal  0.19312 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>